Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/1dc6b31f6b1b7173b2a8a1c276d096/ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1_R2.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/fe6be0afd233563a374fa5f66e9f3b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/fe6be0afd233563a374fa5f66e9f3b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/1dc6b31f6b1b7173b2a8a1c276d096/ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1_R1.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory