.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT (FFPE_V4_0001_RNA_0001_B23LG7FLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/bedaa62136f276ac43f21af43243ff/.command.log
Size: 1.2 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT (FFPE_V4_0001_RNA_0001_B23LG7FLT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/9276f05a7b017a040f2b1016e7a9a7/FFPE_V4_0001_RNA_0001_B23LG7FLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/bedaa62136f276ac43f21af43243ff/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/hgnc/hgnc_complete_set.txt
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/hgnc/HGNC-DB-timestamp.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/e2dae0c4d2a0b0bb274414d7db9ee4/FFPE_V4_0001_RNA_0001_B23LG7FLT4_1_fusionreport_index.html
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/a2ef1f1cc3805b282e6e473371376d/FFPE_V4_0001_RNA_0001_B23LG7FLT4_1.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/bedaa62136f276ac43f21af43243ff/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/15eec542c5e24a3e289e4e5f74d19f/FFPE_V4_0001_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/e2dae0c4d2a0b0bb274414d7db9ee4/FFPE_V4_0001_RNA_0001_B23LG7FLT4_1.fusions.csv
==> STAGING COMPLETE (9 inputs)