.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM (LungN_FFPE_L01_RNA_01_B23LG7FLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/5fbe2c69cfbee381c38bb7addb111c/.command.log
Size: 510 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM (LungN_FFPE_L01_RNA_01_B23LG7FLT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/5fbe2c69cfbee381c38bb7addb111c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/5fbe2c69cfbee381c38bb7addb111c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/6865817d7927ec2d1c35b9b7c65a5e/LungN_FFPE_L01_RNA_01_B23LG7FLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory