Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/134af6909cf832c6f62fe32b0d8ac3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/e8e59ffccb205e8ca63548b7bc97ef/BT-20_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/134af6909cf832c6f62fe32b0d8ac3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/f2a5f29f2cf05d1cc4af6ddfb691f7/BT-20_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: BT-20_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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