Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ctat_ref_annot.interval_list Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/a4c983d4f3928d425374c38a64b6c3/786-O_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/53cd92b48448561cf363f29d302667/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/242750b9c7cf8cac1daa5d5ebe2b8c/786-O_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/53cd92b48448561cf363f29d302667/.command.run Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ref_annot.gtf.refflat ==> STAGING COMPLETE (6 inputs) /usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory May 28, 2026 9:25:49 PM com.intel.gkl.NativeLibraryLoader load INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so [Thu May 28 21:25:49 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT 786-O_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 786-O_FFPE_RNA_0001_B23LG7FLT4_1_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Thu May 28 21:25:49 GMT 2026] Executing as ?@nf-6053cd92b48448561cf363f29d302667-2e9a9-t29w5 on Linux 6.12.83 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0 WARNING: BAM index file /tmp/nxf.XXXX0YdJt7/786-O_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXX0YdJt7/786-O_FFPE_RNA_0001_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam INFO 2026-05-28 21:25:52 CollectRnaSeqMetrics Loaded 58279 genes. INFO 2026-05-28 21:26:04 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 12s. Last read position: chr1:1,049,369 INFO 2026-05-28 21:26:24 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 19s. Last read position: chr1:1,477,330 INFO 2026-05-28 21:26:32 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 8s. Last read position: chr1:2,508,966 INFO 2026-05-28 21:26:45 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 12s. Last read position: chr1:7,777,292 INFO 2026-05-28 21:26:56 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 11s. Last read position: chr1:9,263,981 INFO 2026-05-28 21:27:10 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 14s. Last read position: chr1:11,122,099 INFO 2026-05-28 21:27:26 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 15s. Last read position: chr1:13,778,900 INFO 2026-05-28 21:27:32 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 6s. Last read position: chr1:16,138,163 INFO 2026-05-28 21:27:39 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 7s. Last read position: chr1:18,691,832 INFO 2026-05-28 21:27:56 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 16s. Last read position: chr1:19,243,615 INFO 2026-05-28 21:28:10 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 14s. Last read position: chr1:21,828,375 INFO 2026-05-28 21:28:21 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 10s. Last read position: chr1:23,845,770 INFO 2026-05-28 21:28:30 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 9s. Last read position: chr1:26,561,058 INFO 2026-05-28 21:28:39 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 9s. Last read position: chr1:27,916,100 INFO 2026-05-28 21:28:54 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 14s. Last read position: chr1:31,423,790 INFO 2026-05-28 21:29:11 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 17s. Last read position: chr1:32,672,849 INFO 2026-05-28 21:29:18 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 7s. Last read position: chr1:35,388,692 INFO 2026-05-28 21:29:27 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 8s. Last read position: chr1:37,475,509 INFO 2026-05-28 21:30:15 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 47s. Last read position: chr1:39,370,050 INFO 2026-05-28 21:31:40 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 85s. Last read position: chr1:39,967,155 INFO 2026-05-28 21:31:57 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 16s. Last read position: chr1:42,463,862 INFO 2026-05-28 21:32:15 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 17s. Last read position: chr1:43,451,960 INFO 2026-05-28 21:32:32 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 17s. Last read position: chr1:44,801,884 INFO 2026-05-28 21:32:48 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 15s. Last read position: chr1:46,274,190 INFO 2026-05-28 21:33:04 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 15s. Last read position: chr1:52,431,405 INFO 2026-05-28 21:33:17 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 13s. Last read position: chr1:56,707,580 INFO 2026-05-28 21:33:40 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 23s. Last read position: chr1:67,687,725 INFO 2026-05-28 21:33:53 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 13s. Last read position: chr1:85,580,947 INFO 2026-05-28 21:33:59 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 5s. Last read position: chr1:92,876,366 INFO 2026-05-28 21:34:06 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 6s. Last read position: chr1:97,691,757 INFO 2026-05-28 21:34:30 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 24s. Last read position: chr1:103,014,565 INFO 2026-05-28 21:34:50 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 19s. Last read position: chr1:109,324,954 INFO 2026-05-28 21:35:03 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 13s. Last read position: chr1:112,416,223 INFO 2026-05-28 21:35:13 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 9s. Last read position: chr1:114,424,596 INFO 2026-05-28 21:35:23 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 10s. Last read position: chr1:116,389,599 INFO 2026-05-28 21:35:34 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 10s. Last read position: chr1:116,967,056 INFO 2026-05-28 21:35:51 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 16s. Last read position: chr1:119,743,885 INFO 2026-05-28 21:35:59 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 7s. Last read position: chr1:119,918,455 INFO 2026-05-28 21:36:06 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 7s. Last read position: chr1:119,926,567 INFO 2026-05-28 21:36:14 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 8s. Last read position: chr1:119,955,139 INFO 2026-05-28 21:36:26 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 12s. Last read position: chr1:120,005,501 INFO 2026-05-28 21:36:32 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 5s. Last read position: chr1:120,549,067 INFO 2026-05-28 21:36:36 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 4s. Last read position: chr1:144,906,030 INFO 2026-05-28 21:36:42 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 5s. Last read position: chr1:146,679,062 INFO 2026-05-28 21:36:51 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 9s. Last read position: chr1:148,749,017 INFO 2026-05-28 21:37:03 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 12s. Last read position: chr1:149,811,914 INFO 2026-05-28 21:37:04 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr1:149,909,821 INFO 2026-05-28 21:37:12 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 7s. Last read position: chr1:151,067,234 INFO 2026-05-28 21:37:20 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 8s. Last read position: chr1:152,305,686 INFO 2026-05-28 21:37:27 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 7s. Last read position: chr1:154,157,587 INFO 2026-05-28 21:37:46 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 18s. Last read position: chr1:154,601,236 INFO 2026-05-28 21:38:06 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 19s. Last read position: chr1:155,134,086 INFO 2026-05-28 21:38:22 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 15s. Last read position: chr1:155,480,132 INFO 2026-05-28 21:38:38 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 16s. Last read position: chr1:155,963,038 INFO 2026-05-28 21:38:59 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 20s. Last read position: chr1:156,136,958 INFO 2026-05-28 21:39:16 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 16s. Last read position: chr1:156,670,297 INFO 2026-05-28 21:39:20 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 4s. Last read position: chr1:159,016,670 INFO 2026-05-28 21:39:38 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 18s. Last read position: chr1:162,020,081 INFO 2026-05-28 21:39:45 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 6s. Last read position: chr1:169,131,383 INFO 2026-05-28 21:39:58 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 13s. Last read position: chr1:174,702,229 INFO 2026-05-28 21:40:05 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 6s. Last read position: chr1:182,388,670 INFO 2026-05-28 21:40:12 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 6s. Last read position: chr1:186,323,721 INFO 2026-05-28 21:40:24 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 12s. Last read position: chr1:198,253,109 INFO 2026-05-28 21:40:35 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 10s. Last read position: chr1:202,943,830 INFO 2026-05-28 21:40:45 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 9s. Last read position: chr1:205,718,257 INFO 2026-05-28 21:40:51 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 6s. Last read position: chr1:212,100,250 INFO 2026-05-28 21:40:56 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 4s. Last read position: chr1:218,436,029 INFO 2026-05-28 21:41:04 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 7s. Last read position: chr1:224,404,455 INFO 2026-05-28 21:41:11 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 7s. Last read position: chr1:226,071,555 INFO 2026-05-28 21:41:29 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:15:36s. Time for last 1,000,000: 17s. Last read position: chr1:229,297,597 INFO 2026-05-28 21:41:36 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 7s. Last read position: chr1:235,154,910 INFO 2026-05-28 21:41:52 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 15s. Last read position: chr1:243,695,638 INFO 2026-05-28 21:42:06 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 14s. Last read position: chr1:248,813,057 INFO 2026-05-28 21:42:15 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 9s. Last read position: chr2:9,630,241 INFO 2026-05-28 21:42:27 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 11s. Last read position: chr2:17,649,584 INFO 2026-05-28 21:42:35 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 7s. Last read position: chr2:24,742,135 INFO 2026-05-28 21:42:45 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 9s. Last read position: chr2:27,133,158 INFO 2026-05-28 21:42:56 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 11s. Last read position: chr2:28,411,937 INFO 2026-05-28 21:43:01 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 5s. Last read position: chr2:28,783,910 INFO 2026-05-28 21:43:10 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 8s. Last read position: chr2:32,442,322 INFO 2026-05-28 21:43:17 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 6s. Last read position: chr2:32,916,263 INFO 2026-05-28 21:43:24 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 6s. Last read position: chr2:32,916,264 INFO 2026-05-28 21:43:27 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,406 INFO 2026-05-28 21:43:28 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 0s. Last read position: chr2:32,916,410 INFO 2026-05-28 21:43:34 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 6s. Last read position: chr2:37,138,513 INFO 2026-05-28 21:43:44 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 9s. Last read position: chr2:43,560,348 INFO 2026-05-28 21:43:56 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 12s. Last read position: chr2:48,471,036 INFO 2026-05-28 21:44:08 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 11s. Last read position: chr2:55,233,370 INFO 2026-05-28 21:44:40 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 31s. Last read position: chr2:61,344,019 INFO 2026-05-28 21:45:02 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 22s. Last read position: chr2:68,180,770 INFO 2026-05-28 21:45:20 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 18s. Last read position: chr2:71,076,647 INFO 2026-05-28 21:45:30 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 9s. Last read position: chr2:74,363,034 INFO 2026-05-28 21:45:40 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 10s. Last read position: chr2:85,322,641 INFO 2026-05-28 21:45:48 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 7s. Last read position: chr2:88,562,345 INFO 2026-05-28 21:45:57 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 9s. Last read position: chr2:96,809,338 INFO 2026-05-28 21:46:06 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 8s. Last read position: chr2:101,264,897 INFO 2026-05-28 21:46:22 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 15s. Last read position: chr2:108,676,667 INFO 2026-05-28 21:46:26 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 4s. Last read position: chr2:109,808,338 INFO 2026-05-28 21:46:34 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 7s. Last read position: chr2:112,331,699 INFO 2026-05-28 21:46:39 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 5s. Last read position: chr2:118,843,113 INFO 2026-05-28 21:46:52 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 13s. Last read position: chr2:130,182,636 INFO 2026-05-28 21:47:01 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 8s. Last read position: chr2:135,755,679 INFO 2026-05-28 21:47:15 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 14s. Last read position: chr2:151,468,480 INFO 2026-05-28 21:47:25 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 9s. Last read position: chr2:159,776,418 INFO 2026-05-28 21:47:38 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 12s. Last read position: chr2:171,785,390 INFO 2026-05-28 21:47:46 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 8s. Last read position: chr2:177,215,818 INFO 2026-05-28 21:48:13 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 26s. Last read position: chr2:183,001,961 INFO 2026-05-28 21:48:21 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:22:29s. Time for last 1,000,000: 8s. Last read position: chr2:190,881,019 INFO 2026-05-28 21:48:40 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:22:47s. Time for last 1,000,000: 18s. Last read position: chr2:200,439,270 INFO 2026-05-28 21:49:03 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:23:11s. Time for last 1,000,000: 23s. Last read position: chr2:203,441,269 INFO 2026-05-28 21:49:16 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:23:23s. Time for last 1,000,000: 12s. Last read position: chr2:207,149,720 INFO 2026-05-28 21:49:38 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:23:46s. Time for last 1,000,000: 22s. Last read position: chr2:215,428,244 INFO 2026-05-28 21:49:48 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:23:56s. Time for last 1,000,000: 10s. Last read position: chr2:218,636,425 INFO 2026-05-28 21:49:59 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:24:07s. Time for last 1,000,000: 10s. Last read position: chr2:219,461,919 INFO 2026-05-28 21:50:11 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:24:19s. Time for last 1,000,000: 12s. Last read position: chr2:224,585,013 INFO 2026-05-28 21:50:33 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:24:40s. Time for last 1,000,000: 21s. Last read position: chr2:231,455,038 INFO 2026-05-28 21:50:47 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:24:55s. Time for last 1,000,000: 14s. Last read position: chr2:235,042,020 INFO 2026-05-28 21:50:59 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:25:07s. Time for last 1,000,000: 11s. Last read position: chr2:240,462,473 INFO 2026-05-28 21:51:18 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:25:26s. Time for last 1,000,000: 18s. Last read position: chr2:241,496,502 INFO 2026-05-28 21:51:33 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:25:41s. Time for last 1,000,000: 15s. Last read position: chr3:9,840,247 INFO 2026-05-28 21:51:45 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:25:53s. Time for last 1,000,000: 11s. Last read position: chr3:13,353,626 INFO 2026-05-28 21:51:53 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:26:01s. Time for last 1,000,000: 8s. Last read position: chr3:23,564,933 INFO 2026-05-28 21:52:05 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:26:12s. Time for last 1,000,000: 11s. Last read position: chr3:33,021,605 INFO 2026-05-28 21:52:19 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:26:27s. Time for last 1,000,000: 14s. Last read position: chr3:39,100,827 INFO 2026-05-28 21:52:47 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:26:54s. Time for last 1,000,000: 27s. Last read position: chr3:42,633,722 INFO 2026-05-28 21:52:57 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:27:05s. Time for last 1,000,000: 10s. Last read position: chr3:47,163,862 INFO 2026-05-28 21:53:08 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:27:16s. Time for last 1,000,000: 11s. Last read position: chr3:47,918,762 INFO 2026-05-28 21:53:22 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:27:30s. Time for last 1,000,000: 13s. Last read position: chr3:48,961,657 INFO 2026-05-28 21:53:38 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:27:46s. Time for last 1,000,000: 16s. Last read position: chr3:49,123,965 INFO 2026-05-28 21:53:47 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:27:54s. Time for last 1,000,000: 8s. Last read position: chr3:49,533,072 INFO 2026-05-28 21:54:00 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:28:07s. Time for last 1,000,000: 12s. Last read position: chr3:50,256,218 INFO 2026-05-28 21:54:07 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:28:15s. Time for last 1,000,000: 7s. Last read position: chr3:51,993,713 INFO 2026-05-28 21:54:18 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:28:26s. Time for last 1,000,000: 11s. Last read position: chr3:52,687,247 INFO 2026-05-28 21:54:29 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:28:36s. Time for last 1,000,000: 10s. Last read position: chr3:53,242,213 INFO 2026-05-28 21:54:43 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:28:51s. Time for last 1,000,000: 14s. Last read position: chr3:58,148,812 INFO 2026-05-28 21:55:01 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:29:09s. Time for last 1,000,000: 17s. Last read position: chr3:71,690,148 INFO 2026-05-28 21:55:08 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:29:16s. Time for last 1,000,000: 7s. Last read position: chr3:98,799,495 INFO 2026-05-28 21:55:28 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:29:35s. Time for last 1,000,000: 19s. Last read position: chr3:100,866,879 INFO 2026-05-28 21:55:38 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:29:46s. Time for last 1,000,000: 10s. Last read position: chr3:114,350,431 INFO 2026-05-28 21:55:46 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:29:54s. Time for last 1,000,000: 7s. Last read position: chr3:123,620,242 INFO 2026-05-28 21:55:57 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:30:04s. Time for last 1,000,000: 10s. Last read position: chr3:127,017,461 INFO 2026-05-28 21:56:04 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:30:12s. Time for last 1,000,000: 7s. Last read position: chr3:129,431,563 INFO 2026-05-28 21:56:17 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:30:24s. Time for last 1,000,000: 12s. Last read position: chr3:134,370,950 INFO 2026-05-28 21:56:30 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:30:38s. Time for last 1,000,000: 13s. Last read position: chr3:146,124,136 INFO 2026-05-28 21:56:37 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:30:45s. Time for last 1,000,000: 7s. Last read position: chr3:154,289,756 INFO 2026-05-28 21:56:48 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:30:56s. Time for last 1,000,000: 10s. Last read position: chr3:171,612,268 INFO 2026-05-28 21:57:10 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:31:18s. Time for last 1,000,000: 21s. Last read position: chr3:181,713,253 INFO 2026-05-28 21:57:22 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:31:29s. Time for last 1,000,000: 11s. Last read position: chr3:184,306,807 INFO 2026-05-28 21:57:50 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:31:58s. Time for last 1,000,000: 28s. Last read position: chr3:186,048,700 INFO 2026-05-28 21:58:00 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:32:08s. Time for last 1,000,000: 10s. Last read position: chr3:193,643,600 INFO 2026-05-28 21:58:14 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:32:22s. Time for last 1,000,000: 13s. Last read position: chr3:196,577,787 INFO 2026-05-28 21:58:49 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:32:57s. Time for last 1,000,000: 35s. Last read position: chr4:967,019 INFO 2026-05-28 21:58:57 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:33:05s. Time for last 1,000,000: 8s. Last read position: chr4:1,728,682 INFO 2026-05-28 21:59:13 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:33:20s. Time for last 1,000,000: 15s. Last read position: chr4:2,174,716 INFO 2026-05-28 21:59:34 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:33:42s. Time for last 1,000,000: 21s. Last read position: chr4:5,809,573 INFO 2026-05-28 21:59:42 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:33:50s. Time for last 1,000,000: 8s. Last read position: chr4:10,075,374 INFO 2026-05-28 21:59:54 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:34:02s. Time for last 1,000,000: 11s. Last read position: chr4:23,814,194 INFO 2026-05-28 22:00:04 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:34:12s. Time for last 1,000,000: 9s. Last read position: chr4:39,890,294 INFO 2026-05-28 22:00:23 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:34:31s. Time for last 1,000,000: 18s. Last read position: chr4:46,724,088 INFO 2026-05-28 22:00:34 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:34:42s. Time for last 1,000,000: 10s. Last read position: chr4:55,396,215 INFO 2026-05-28 22:00:42 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:34:50s. Time for last 1,000,000: 8s. Last read position: chr4:57,025,417 INFO 2026-05-28 22:00:46 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:34:54s. Time for last 1,000,000: 3s. Last read position: chr4:57,110,185 INFO 2026-05-28 22:00:54 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:35:02s. Time for last 1,000,000: 8s. Last read position: chr4:73,148,956 INFO 2026-05-28 22:01:10 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:35:18s. Time for last 1,000,000: 15s. Last read position: chr4:77,720,563 INFO 2026-05-28 22:01:26 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:35:33s. Time for last 1,000,000: 15s. Last read position: chr4:87,980,114 INFO 2026-05-28 22:01:34 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:35:42s. Time for last 1,000,000: 8s. Last read position: chr4:101,099,702 INFO 2026-05-28 22:02:09 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:36:17s. Time for last 1,000,000: 34s. Last read position: chr4:113,978,747 INFO 2026-05-28 22:02:23 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:36:30s. Time for last 1,000,000: 13s. Last read position: chr4:122,929,122 INFO 2026-05-28 22:02:29 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:36:37s. Time for last 1,000,000: 6s. Last read position: chr4:139,719,284 INFO 2026-05-28 22:02:44 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:36:52s. Time for last 1,000,000: 14s. Last read position: chr4:151,101,006 INFO 2026-05-28 22:03:20 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:37:28s. Time for last 1,000,000: 36s. Last read position: chr4:158,171,132 INFO 2026-05-28 22:03:32 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:37:40s. Time for last 1,000,000: 12s. Last read position: chr4:168,924,995 INFO 2026-05-28 22:03:40 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:37:48s. Time for last 1,000,000: 7s. Last read position: chr4:183,259,691 INFO 2026-05-28 22:03:51 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:37:59s. Time for last 1,000,000: 11s. Last read position: chr4:186,639,726 INFO 2026-05-28 22:03:59 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:38:07s. Time for last 1,000,000: 8s. Last read position: chr5:3,600,637 INFO 2026-05-28 22:04:10 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:38:18s. Time for last 1,000,000: 10s. Last read position: chr5:14,287,017 INFO 2026-05-28 22:04:36 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:38:43s. Time for last 1,000,000: 25s. Last read position: chr5:14,487,548 INFO 2026-05-28 22:04:57 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:39:04s. Time for last 1,000,000: 21s. Last read position: chr5:32,355,796 INFO 2026-05-28 22:05:11 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:39:19s. Time for last 1,000,000: 14s. Last read position: chr5:38,990,973 INFO 2026-05-28 22:05:21 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:39:29s. Time for last 1,000,000: 10s. Last read position: chr5:55,534,667 INFO 2026-05-28 22:05:34 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:39:42s. Time for last 1,000,000: 12s. Last read position: chr5:66,076,340 INFO 2026-05-28 22:05:41 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:39:49s. Time for last 1,000,000: 6s. Last read position: chr5:72,194,160 INFO 2026-05-28 22:05:45 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:39:53s. Time for last 1,000,000: 4s. Last read position: chr5:72,223,761 INFO 2026-05-28 22:05:56 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:40:04s. Time for last 1,000,000: 10s. Last read position: chr5:77,464,779 INFO 2026-05-28 22:06:03 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:40:11s. Time for last 1,000,000: 7s. Last read position: chr5:83,512,240 INFO 2026-05-28 22:06:14 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:40:21s. Time for last 1,000,000: 10s. Last read position: chr5:87,362,583 INFO 2026-05-28 22:06:40 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:40:48s. Time for last 1,000,000: 26s. Last read position: chr5:96,722,661 INFO 2026-05-28 22:07:58 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:42:06s. Time for last 1,000,000: 77s. Last read position: chr5:108,380,828 INFO 2026-05-28 22:08:08 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:42:16s. Time for last 1,000,000: 10s. Last read position: chr5:119,171,849 INFO 2026-05-28 22:08:32 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:42:40s. Time for last 1,000,000: 23s. Last read position: chr5:131,431,109 INFO 2026-05-28 22:08:51 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:42:58s. Time for last 1,000,000: 18s. Last read position: chr5:134,205,981 INFO 2026-05-28 22:09:07 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:43:15s. Time for last 1,000,000: 16s. Last read position: chr5:138,345,263 INFO 2026-05-28 22:09:22 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:43:30s. Time for last 1,000,000: 15s. Last read position: chr5:139,319,350 INFO 2026-05-28 22:09:37 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:43:45s. Time for last 1,000,000: 15s. Last read position: chr5:141,173,461 INFO 2026-05-28 22:09:41 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:43:49s. Time for last 1,000,000: 3s. Last read position: chr5:141,414,868 INFO 2026-05-28 22:09:55 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:44:02s. Time for last 1,000,000: 13s. Last read position: chr5:142,314,698 INFO 2026-05-28 22:10:20 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:44:28s. Time for last 1,000,000: 25s. Last read position: chr5:149,505,460 INFO 2026-05-28 22:10:35 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:44:43s. Time for last 1,000,000: 15s. Last read position: chr5:151,663,460 INFO 2026-05-28 22:10:52 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:45:00s. Time for last 1,000,000: 16s. Last read position: chr5:154,813,919 INFO 2026-05-28 22:11:01 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:45:09s. Time for last 1,000,000: 9s. Last read position: chr5:160,424,255 INFO 2026-05-28 22:11:12 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:45:20s. Time for last 1,000,000: 10s. Last read position: chr5:168,262,163 INFO 2026-05-28 22:11:33 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:45:41s. Time for last 1,000,000: 21s. Last read position: chr5:171,405,375 INFO 2026-05-28 22:11:42 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:45:50s. Time for last 1,000,000: 8s. Last read position: chr5:176,651,634 INFO 2026-05-28 22:11:54 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:46:02s. Time for last 1,000,000: 12s. Last read position: chr5:177,604,366 INFO 2026-05-28 22:12:17 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:46:25s. Time for last 1,000,000: 22s. Last read position: chr5:179,797,889 INFO 2026-05-28 22:12:35 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:46:43s. Time for last 1,000,000: 17s. Last read position: chr5:179,888,298 INFO 2026-05-28 22:12:51 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:46:59s. Time for last 1,000,000: 16s. Last read position: chr6:3,154,457 INFO 2026-05-28 22:12:59 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:47:06s. Time for last 1,000,000: 7s. Last read position: chr6:8,428,001 INFO 2026-05-28 22:13:06 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:47:13s. Time for last 1,000,000: 6s. Last read position: chr6:17,543,057 INFO 2026-05-28 22:13:21 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:47:29s. Time for last 1,000,000: 15s. Last read position: chr6:26,026,953 INFO 2026-05-28 22:13:23 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:47:30s. Time for last 1,000,000: 1s. Last read position: chr6:26,250,476 INFO 2026-05-28 22:13:25 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:47:33s. Time for last 1,000,000: 2s. Last read position: chr6:29,604,538 INFO 2026-05-28 22:13:34 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:47:42s. Time for last 1,000,000: 8s. Last read position: chr6:30,656,596 INFO 2026-05-28 22:13:55 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:48:03s. Time for last 1,000,000: 20s. Last read position: chr6:31,159,688 INFO 2026-05-28 22:14:04 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:48:11s. Time for last 1,000,000: 8s. Last read position: chr6:31,639,080 INFO 2026-05-28 22:14:21 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:48:28s. Time for last 1,000,000: 16s. Last read position: chr6:31,829,195 INFO 2026-05-28 22:14:32 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:48:40s. Time for last 1,000,000: 11s. Last read position: chr6:33,203,573 INFO 2026-05-28 22:14:40 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:48:48s. Time for last 1,000,000: 8s. Last read position: chr6:33,670,427 INFO 2026-05-28 22:14:48 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:48:56s. Time for last 1,000,000: 7s. Last read position: chr6:35,419,635 INFO 2026-05-28 22:14:54 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:49:02s. Time for last 1,000,000: 6s. Last read position: chr6:38,687,294 INFO 2026-05-28 22:15:04 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:49:12s. Time for last 1,000,000: 10s. Last read position: chr6:43,132,095 INFO 2026-05-28 22:15:17 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:49:24s. Time for last 1,000,000: 12s. Last read position: chr6:44,230,595 INFO 2026-05-28 22:15:25 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:49:33s. Time for last 1,000,000: 8s. Last read position: chr6:52,994,131 INFO 2026-05-28 22:16:03 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:50:11s. Time for last 1,000,000: 37s. Last read position: chr6:56,552,202 INFO 2026-05-28 22:17:42 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:51:50s. Time for last 1,000,000: 98s. Last read position: chr6:57,150,730 INFO 2026-05-28 22:18:02 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:52:09s. Time for last 1,000,000: 19s. Last read position: chr6:75,202,770 INFO 2026-05-28 22:18:15 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:52:22s. Time for last 1,000,000: 13s. Last read position: chr6:85,637,268 INFO 2026-05-28 22:18:19 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:52:27s. Time for last 1,000,000: 4s. Last read position: chr6:89,683,278 INFO 2026-05-28 22:18:29 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:52:37s. Time for last 1,000,000: 9s. Last read position: chr6:105,278,087 INFO 2026-05-28 22:18:37 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:52:45s. Time for last 1,000,000: 8s. Last read position: chr6:111,310,002 INFO 2026-05-28 22:18:48 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:52:56s. Time for last 1,000,000: 10s. Last read position: chr6:117,566,853 INFO 2026-05-28 22:18:55 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:53:03s. Time for last 1,000,000: 6s. Last read position: chr6:127,512,917 INFO 2026-05-28 22:19:10 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:53:18s. Time for last 1,000,000: 15s. Last read position: chr6:133,390,612 INFO 2026-05-28 22:19:24 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:53:31s. Time for last 1,000,000: 13s. Last read position: chr6:139,373,822 INFO 2026-05-28 22:19:32 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:53:40s. Time for last 1,000,000: 8s. Last read position: chr6:149,379,439 INFO 2026-05-28 22:19:38 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:53:46s. Time for last 1,000,000: 5s. Last read position: chr6:151,352,920 INFO 2026-05-28 22:20:17 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:54:25s. Time for last 1,000,000: 38s. Last read position: chr6:158,062,152 INFO 2026-05-28 22:20:22 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:54:30s. Time for last 1,000,000: 5s. Last read position: chr6:158,785,381 INFO 2026-05-28 22:20:35 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:54:43s. Time for last 1,000,000: 12s. Last read position: chr6:161,109,870 INFO 2026-05-28 22:20:46 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:54:54s. Time for last 1,000,000: 11s. Last read position: chr6:163,570,005 INFO 2026-05-28 22:20:59 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:55:06s. Time for last 1,000,000: 12s. Last read position: chr7:780,131 INFO 2026-05-28 22:21:08 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:55:16s. Time for last 1,000,000: 9s. Last read position: chr7:2,520,048 INFO 2026-05-28 22:21:16 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:55:24s. Time for last 1,000,000: 8s. Last read position: chr7:5,217,171 INFO 2026-05-28 22:21:24 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:55:32s. Time for last 1,000,000: 7s. Last read position: chr7:5,528,004 INFO 2026-05-28 22:21:34 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:55:41s. Time for last 1,000,000: 9s. Last read position: chr7:5,529,182 INFO 2026-05-28 22:21:44 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:55:51s. Time for last 1,000,000: 9s. Last read position: chr7:6,046,128 INFO 2026-05-28 22:21:51 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:55:59s. Time for last 1,000,000: 7s. Last read position: chr7:16,753,969 INFO 2026-05-28 22:22:02 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:56:10s. Time for last 1,000,000: 10s. Last read position: chr7:24,842,323 INFO 2026-05-28 22:22:28 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:56:36s. Time for last 1,000,000: 26s. Last read position: chr7:30,632,305 INFO 2026-05-28 22:22:39 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:56:46s. Time for last 1,000,000: 10s. Last read position: chr7:38,494,517 INFO 2026-05-28 22:22:46 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:56:54s. Time for last 1,000,000: 7s. Last read position: chr7:44,058,162 INFO 2026-05-28 22:22:57 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:57:05s. Time for last 1,000,000: 10s. Last read position: chr7:44,884,639 INFO 2026-05-28 22:23:10 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:57:18s. Time for last 1,000,000: 12s. Last read position: chr7:54,755,791 INFO 2026-05-28 22:23:18 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:57:26s. Time for last 1,000,000: 8s. Last read position: chr7:65,373,881 INFO 2026-05-28 22:23:30 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:57:38s. Time for last 1,000,000: 11s. Last read position: chr7:72,939,890 INFO 2026-05-28 22:23:33 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:57:41s. Time for last 1,000,000: 3s. Last read position: chr7:73,477,917 INFO 2026-05-28 22:23:42 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:57:50s. Time for last 1,000,000: 8s. Last read position: chr7:74,749,355 INFO 2026-05-28 22:23:47 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:57:54s. Time for last 1,000,000: 4s. Last read position: chr7:75,539,392 INFO 2026-05-28 22:23:54 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:58:02s. Time for last 1,000,000: 7s. Last read position: chr7:76,981,204 INFO 2026-05-28 22:24:05 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:58:12s. Time for last 1,000,000: 10s. Last read position: chr7:90,726,774 INFO 2026-05-28 22:25:19 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:59:27s. Time for last 1,000,000: 74s. Last read position: chr7:92,833,204 INFO 2026-05-28 22:25:46 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:59:53s. Time for last 1,000,000: 26s. Last read position: chr7:94,663,957 INFO 2026-05-28 22:25:53 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 01:00:01s. Time for last 1,000,000: 7s. Last read position: chr7:98,241,211 INFO 2026-05-28 22:26:19 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 01:00:26s. Time for last 1,000,000: 25s. Last read position: chr7:99,573,575 INFO 2026-05-28 22:26:29 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 01:00:36s. Time for last 1,000,000: 10s. Last read position: chr7:100,436,281 INFO 2026-05-28 22:26:38 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 01:00:45s. Time for last 1,000,000: 8s. Last read position: chr7:101,087,575 INFO 2026-05-28 22:26:48 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 01:00:55s. Time for last 1,000,000: 10s. Last read position: chr7:102,541,649 INFO 2026-05-28 22:26:56 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 01:01:04s. Time for last 1,000,000: 8s. Last read position: chr7:105,112,926 INFO 2026-05-28 22:27:23 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 01:01:31s. Time for last 1,000,000: 26s. Last read position: chr7:113,117,429 INFO 2026-05-28 22:27:40 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 01:01:48s. Time for last 1,000,000: 16s. Last read position: chr7:124,841,117 INFO 2026-05-28 22:27:50 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 01:01:57s. Time for last 1,000,000: 9s. Last read position: chr7:128,087,006 INFO 2026-05-28 22:27:59 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 01:02:06s. Time for last 1,000,000: 9s. Last read position: chr7:130,440,640 INFO 2026-05-28 22:28:12 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 01:02:20s. Time for last 1,000,000: 13s. Last read position: chr7:135,166,673 INFO 2026-05-28 22:28:18 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 01:02:26s. Time for last 1,000,000: 6s. Last read position: chr7:138,916,915 INFO 2026-05-28 22:28:26 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 01:02:34s. Time for last 1,000,000: 7s. Last read position: chr7:140,696,691 INFO 2026-05-28 22:28:42 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 01:02:49s. Time for last 1,000,000: 15s. Last read position: chr7:148,818,812 INFO 2026-05-28 22:28:54 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 01:03:02s. Time for last 1,000,000: 12s. Last read position: chr7:151,064,551 INFO 2026-05-28 22:29:07 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 01:03:15s. Time for last 1,000,000: 13s. Last read position: chr7:152,144,841 INFO 2026-05-28 22:29:39 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 01:03:46s. Time for last 1,000,000: 31s. Last read position: chr7:158,655,342 INFO 2026-05-28 22:29:52 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 01:04:00s. Time for last 1,000,000: 13s. Last read position: chr8:11,847,156 INFO 2026-05-28 22:30:16 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 01:04:24s. Time for last 1,000,000: 24s. Last read position: chr8:22,140,646 INFO 2026-05-28 22:30:28 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 01:04:36s. Time for last 1,000,000: 11s. Last read position: chr8:23,844,523 INFO 2026-05-28 22:30:37 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 01:04:44s. Time for last 1,000,000: 8s. Last read position: chr8:30,812,393 INFO 2026-05-28 22:30:55 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 01:05:02s. Time for last 1,000,000: 18s. Last read position: chr8:38,819,730 INFO 2026-05-28 22:31:20 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 01:05:27s. Time for last 1,000,000: 24s. Last read position: chr8:42,838,087 INFO 2026-05-28 22:31:36 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 01:05:43s. Time for last 1,000,000: 16s. Last read position: chr8:55,802,538 INFO 2026-05-28 22:31:51 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 01:05:59s. Time for last 1,000,000: 15s. Last read position: chr8:70,600,034 INFO 2026-05-28 22:32:03 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 01:06:11s. Time for last 1,000,000: 12s. Last read position: chr8:93,922,377 INFO 2026-05-28 22:32:28 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 01:06:36s. Time for last 1,000,000: 25s. Last read position: chr8:102,305,172 INFO 2026-05-28 22:32:44 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 01:06:52s. Time for last 1,000,000: 16s. Last read position: chr8:123,226,466 INFO 2026-05-28 22:33:04 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 01:07:11s. Time for last 1,000,000: 19s. Last read position: chr8:130,124,043 INFO 2026-05-28 22:33:33 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 01:07:41s. Time for last 1,000,000: 29s. Last read position: chr8:143,589,298 INFO 2026-05-28 22:33:52 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 01:08:00s. Time for last 1,000,000: 18s. Last read position: chr8:143,921,553 INFO 2026-05-28 22:34:25 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 01:08:33s. Time for last 1,000,000: 33s. Last read position: chr8:144,240,536 INFO 2026-05-28 22:34:42 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 01:08:50s. Time for last 1,000,000: 17s. Last read position: chr8:144,842,780 INFO 2026-05-28 22:35:10 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 01:09:18s. Time for last 1,000,000: 27s. Last read position: chr9:4,286,119 INFO 2026-05-28 22:35:40 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 01:09:48s. Time for last 1,000,000: 30s. Last read position: chr9:13,121,788 INFO 2026-05-28 22:36:16 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 01:10:24s. Time for last 1,000,000: 35s. Last read position: chr9:16,704,782 INFO 2026-05-28 22:36:27 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 01:10:34s. Time for last 1,000,000: 10s. Last read position: chr9:33,113,175 INFO 2026-05-28 22:36:38 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 01:10:46s. Time for last 1,000,000: 11s. Last read position: chr9:35,062,311 INFO 2026-05-28 22:36:54 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 01:11:02s. Time for last 1,000,000: 16s. Last read position: chr9:35,725,606 INFO 2026-05-28 22:37:06 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 01:11:14s. Time for last 1,000,000: 11s. Last read position: chr9:39,100,128 INFO 2026-05-28 22:37:15 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 01:11:23s. Time for last 1,000,000: 9s. Last read position: chr9:70,218,400 INFO 2026-05-28 22:37:38 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 01:11:46s. Time for last 1,000,000: 22s. Last read position: chr9:83,683,001 INFO 2026-05-28 22:37:57 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 01:12:05s. Time for last 1,000,000: 19s. Last read position: chr9:93,452,053 INFO 2026-05-28 22:38:09 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 01:12:16s. Time for last 1,000,000: 11s. Last read position: chr9:100,104,515 INFO 2026-05-28 22:38:37 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 01:12:45s. Time for last 1,000,000: 28s. Last read position: chr9:110,137,433 INFO 2026-05-28 22:38:54 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 01:13:02s. Time for last 1,000,000: 16s. Last read position: chr9:115,031,645 INFO 2026-05-28 22:39:34 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 01:13:41s. Time for last 1,000,000: 39s. Last read position: chr9:120,550,821 INFO 2026-05-28 22:39:49 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 01:13:57s. Time for last 1,000,000: 15s. Last read position: chr9:124,801,657 INFO 2026-05-28 22:40:11 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 01:14:18s. Time for last 1,000,000: 21s. Last read position: chr9:127,786,224 INFO 2026-05-28 22:40:35 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 01:14:42s. Time for last 1,000,000: 24s. Last read position: chr9:128,580,969 INFO 2026-05-28 22:41:03 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 01:15:11s. Time for last 1,000,000: 28s. Last read position: chr9:129,111,509 INFO 2026-05-28 22:41:13 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 01:15:21s. Time for last 1,000,000: 10s. Last read position: chr9:130,885,564 INFO 2026-05-28 22:41:30 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 01:15:38s. Time for last 1,000,000: 17s. Last read position: chr9:132,678,362 INFO 2026-05-28 22:41:39 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 01:15:46s. Time for last 1,000,000: 8s. Last read position: chr9:134,730,301 INFO 2026-05-28 22:41:50 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 01:15:58s. Time for last 1,000,000: 11s. Last read position: chr9:136,407,316 INFO 2026-05-28 22:42:20 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 01:16:28s. Time for last 1,000,000: 29s. Last read position: chr9:136,862,119 INFO 2026-05-28 22:42:39 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 01:16:47s. Time for last 1,000,000: 19s. Last read position: chr9:137,255,341 INFO 2026-05-28 22:43:10 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 01:17:18s. Time for last 1,000,000: 30s. Last read position: chr10:5,748,997 INFO 2026-05-28 22:43:29 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 01:17:37s. Time for last 1,000,000: 18s. Last read position: chr10:17,237,226 INFO 2026-05-28 22:43:54 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 01:18:02s. Time for last 1,000,000: 24s. Last read position: chr10:32,023,006 INFO 2026-05-28 22:44:15 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 01:18:23s. Time for last 1,000,000: 21s. Last read position: chr10:46,010,646 INFO 2026-05-28 22:44:25 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 01:18:33s. Time for last 1,000,000: 10s. Last read position: chr10:58,799,141 INFO 2026-05-28 22:44:39 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 01:18:46s. Time for last 1,000,000: 13s. Last read position: chr10:69,379,977 INFO 2026-05-28 22:44:47 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 01:18:55s. Time for last 1,000,000: 8s. Last read position: chr10:73,746,901 INFO 2026-05-28 22:45:07 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 01:19:15s. Time for last 1,000,000: 20s. Last read position: chr10:77,853,510 INFO 2026-05-28 22:45:14 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 01:19:21s. Time for last 1,000,000: 6s. Last read position: chr10:87,770,978 INFO 2026-05-28 22:45:27 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 01:19:35s. Time for last 1,000,000: 13s. Last read position: chr10:93,397,249 INFO 2026-05-28 22:45:48 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 01:19:56s. Time for last 1,000,000: 20s. Last read position: chr10:97,570,163 INFO 2026-05-28 22:45:58 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 01:20:06s. Time for last 1,000,000: 9s. Last read position: chr10:101,608,894 INFO 2026-05-28 22:46:43 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 01:20:51s. Time for last 1,000,000: 45s. Last read position: chr10:103,897,550 INFO 2026-05-28 22:47:01 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 01:21:09s. Time for last 1,000,000: 18s. Last read position: chr10:116,915,434 INFO 2026-05-28 22:47:12 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 01:21:19s. Time for last 1,000,000: 10s. Last read position: chr10:124,408,839 INFO 2026-05-28 22:47:19 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 01:21:26s. Time for last 1,000,000: 7s. Last read position: chr10:128,115,986 INFO 2026-05-28 22:47:28 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 01:21:36s. Time for last 1,000,000: 9s. Last read position: chr11:611,667 INFO 2026-05-28 22:47:37 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 01:21:45s. Time for last 1,000,000: 9s. Last read position: chr11:1,754,015 INFO 2026-05-28 22:47:56 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 01:22:03s. Time for last 1,000,000: 18s. Last read position: chr11:6,393,255 INFO 2026-05-28 22:48:14 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 01:22:22s. Time for last 1,000,000: 18s. Last read position: chr11:9,993,009 INFO 2026-05-28 22:48:27 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 01:22:35s. Time for last 1,000,000: 12s. Last read position: chr11:17,169,242 INFO 2026-05-28 22:48:41 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 01:22:48s. Time for last 1,000,000: 13s. Last read position: chr11:33,068,708 INFO 2026-05-28 22:48:56 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 01:23:04s. Time for last 1,000,000: 15s. Last read position: chr11:35,619,342 INFO 2026-05-28 22:49:09 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 01:23:17s. Time for last 1,000,000: 12s. Last read position: chr11:46,750,293 INFO 2026-05-28 22:49:26 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 01:23:34s. Time for last 1,000,000: 17s. Last read position: chr11:47,801,894 INFO 2026-05-28 22:49:43 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 01:23:50s. Time for last 1,000,000: 16s. Last read position: chr11:58,579,465 INFO 2026-05-28 22:49:57 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 01:24:05s. Time for last 1,000,000: 14s. Last read position: chr11:61,828,510 INFO 2026-05-28 22:50:05 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 01:24:12s. Time for last 1,000,000: 7s. Last read position: chr11:62,529,906 INFO 2026-05-28 22:50:16 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 01:24:23s. Time for last 1,000,000: 10s. Last read position: chr11:62,834,275 INFO 2026-05-28 22:50:36 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 01:24:44s. Time for last 1,000,000: 20s. Last read position: chr11:64,288,146 INFO 2026-05-28 22:50:46 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 01:24:54s. Time for last 1,000,000: 10s. Last read position: chr11:65,183,498 INFO 2026-05-28 22:50:58 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 01:25:06s. Time for last 1,000,000: 12s. Last read position: chr11:65,554,194 INFO 2026-05-28 22:51:11 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 01:25:19s. Time for last 1,000,000: 12s. Last read position: chr11:65,978,879 INFO 2026-05-28 22:51:22 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 01:25:30s. Time for last 1,000,000: 11s. Last read position: chr11:67,215,918 INFO 2026-05-28 22:51:32 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 01:25:40s. Time for last 1,000,000: 9s. Last read position: chr11:68,413,926 INFO 2026-05-28 22:51:44 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 01:25:52s. Time for last 1,000,000: 11s. Last read position: chr11:72,012,963 INFO 2026-05-28 22:52:03 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 01:26:11s. Time for last 1,000,000: 19s. Last read position: chr11:75,400,794 INFO 2026-05-28 22:52:15 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 01:26:23s. Time for last 1,000,000: 12s. Last read position: chr11:88,334,983 INFO 2026-05-28 22:52:26 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 01:26:34s. Time for last 1,000,000: 10s. Last read position: chr11:102,205,908 INFO 2026-05-28 22:52:41 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 01:26:49s. Time for last 1,000,000: 14s. Last read position: chr11:112,026,197 INFO 2026-05-28 22:52:54 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 01:27:01s. Time for last 1,000,000: 12s. Last read position: chr11:118,503,901 INFO 2026-05-28 22:53:08 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 01:27:16s. Time for last 1,000,000: 14s. Last read position: chr11:119,095,015 INFO 2026-05-28 22:53:19 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 01:27:27s. Time for last 1,000,000: 11s. Last read position: chr11:123,060,707 INFO 2026-05-28 22:53:31 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 01:27:38s. Time for last 1,000,000: 11s. Last read position: chr11:130,121,628 INFO 2026-05-28 22:53:45 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 01:27:53s. Time for last 1,000,000: 14s. Last read position: chr12:2,858,970 INFO 2026-05-28 22:53:59 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 01:28:07s. Time for last 1,000,000: 14s. Last read position: chr12:6,582,860 INFO 2026-05-28 22:54:28 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 01:28:36s. Time for last 1,000,000: 29s. Last read position: chr12:6,967,929 INFO 2026-05-28 22:54:35 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 01:28:43s. Time for last 1,000,000: 6s. Last read position: chr12:13,214,560 INFO 2026-05-28 22:54:45 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 01:28:53s. Time for last 1,000,000: 9s. Last read position: chr12:27,660,912 INFO 2026-05-28 22:54:57 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 01:29:05s. Time for last 1,000,000: 11s. Last read position: chr12:42,464,698 INFO 2026-05-28 22:55:10 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 01:29:18s. Time for last 1,000,000: 13s. Last read position: chr12:48,771,800 INFO 2026-05-28 22:55:17 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 01:29:25s. Time for last 1,000,000: 6s. Last read position: chr12:49,185,443 INFO 2026-05-28 22:55:27 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 01:29:35s. Time for last 1,000,000: 9s. Last read position: chr12:50,819,642 INFO 2026-05-28 22:55:39 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 01:29:47s. Time for last 1,000,000: 12s. Last read position: chr12:53,467,823 INFO 2026-05-28 22:55:54 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 01:30:02s. Time for last 1,000,000: 14s. Last read position: chr12:55,800,871 INFO 2026-05-28 22:56:06 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 01:30:14s. Time for last 1,000,000: 12s. Last read position: chr12:56,544,888 INFO 2026-05-28 22:56:19 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 01:30:26s. Time for last 1,000,000: 12s. Last read position: chr12:57,498,462 INFO 2026-05-28 22:56:32 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 01:30:40s. Time for last 1,000,000: 13s. Last read position: chr12:65,170,098 INFO 2026-05-28 22:56:44 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 01:30:52s. Time for last 1,000,000: 12s. Last read position: chr12:76,029,037 INFO 2026-05-28 22:56:56 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 01:31:03s. Time for last 1,000,000: 11s. Last read position: chr12:93,476,956 INFO 2026-05-28 22:57:04 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 01:31:12s. Time for last 1,000,000: 8s. Last read position: chr12:103,930,498 INFO 2026-05-28 22:57:20 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 01:31:28s. Time for last 1,000,000: 15s. Last read position: chr12:108,788,085 INFO 2026-05-28 22:57:33 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 01:31:41s. Time for last 1,000,000: 13s. Last read position: chr12:112,226,722 INFO 2026-05-28 22:57:46 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 01:31:54s. Time for last 1,000,000: 12s. Last read position: chr12:118,243,469 INFO 2026-05-28 22:58:01 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 01:32:09s. Time for last 1,000,000: 15s. Last read position: chr12:121,245,172 INFO 2026-05-28 22:58:13 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 01:32:20s. Time for last 1,000,000: 11s. Last read position: chr12:123,267,211 INFO 2026-05-28 22:58:28 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 01:32:36s. Time for last 1,000,000: 15s. Last read position: chr12:124,372,590 INFO 2026-05-28 22:58:42 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 01:32:50s. Time for last 1,000,000: 13s. Last read position: chr12:132,570,116 INFO 2026-05-28 22:58:53 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 01:33:00s. Time for last 1,000,000: 10s. Last read position: chr13:20,988,108 INFO 2026-05-28 22:58:58 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 01:33:05s. Time for last 1,000,000: 5s. Last read position: chr13:29,517,617 INFO 2026-05-28 22:59:07 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 01:33:14s. Time for last 1,000,000: 9s. Last read position: chr13:41,960,958 INFO 2026-05-28 22:59:14 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 01:33:22s. Time for last 1,000,000: 7s. Last read position: chr13:50,012,281 INFO 2026-05-28 22:59:23 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 01:33:31s. Time for last 1,000,000: 8s. Last read position: chr13:77,015,442 INFO 2026-05-28 22:59:36 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 01:33:44s. Time for last 1,000,000: 12s. Last read position: chr13:98,475,356 INFO 2026-05-28 22:59:46 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 01:33:54s. Time for last 1,000,000: 10s. Last read position: chr13:110,439,795 INFO 2026-05-28 22:59:56 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 01:34:03s. Time for last 1,000,000: 9s. Last read position: chr14:20,311,679 INFO 2026-05-28 23:00:10 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 01:34:18s. Time for last 1,000,000: 14s. Last read position: chr14:22,973,455 INFO 2026-05-28 23:00:21 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 01:34:29s. Time for last 1,000,000: 10s. Last read position: chr14:24,440,338 INFO 2026-05-28 23:00:35 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 01:34:43s. Time for last 1,000,000: 14s. Last read position: chr14:35,402,033 INFO 2026-05-28 23:00:41 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 01:34:48s. Time for last 1,000,000: 5s. Last read position: chr14:49,586,689 INFO 2026-05-28 23:00:43 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 01:34:51s. Time for last 1,000,000: 2s. Last read position: chr14:49,862,671 INFO 2026-05-28 23:00:51 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 01:34:58s. Time for last 1,000,000: 7s. Last read position: chr14:55,138,160 INFO 2026-05-28 23:01:05 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 01:35:13s. Time for last 1,000,000: 14s. Last read position: chr14:61,738,158 INFO 2026-05-28 23:01:45 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 01:35:53s. Time for last 1,000,000: 40s. Last read position: chr14:67,690,370 INFO 2026-05-28 23:01:58 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 01:36:06s. Time for last 1,000,000: 13s. Last read position: chr14:73,110,960 INFO 2026-05-28 23:02:07 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 01:36:15s. Time for last 1,000,000: 8s. Last read position: chr14:77,027,686 INFO 2026-05-28 23:02:16 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 01:36:24s. Time for last 1,000,000: 9s. Last read position: chr14:93,220,326 INFO 2026-05-28 23:02:41 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 01:36:49s. Time for last 1,000,000: 24s. Last read position: chr14:102,001,309 INFO 2026-05-28 23:04:51 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 01:38:59s. Time for last 1,000,000: 130s. Last read position: chr14:102,980,934 INFO 2026-05-28 23:05:19 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 01:39:26s. Time for last 1,000,000: 27s. Last read position: chr14:104,773,961 INFO 2026-05-28 23:05:27 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 01:39:35s. Time for last 1,000,000: 8s. Last read position: chr15:20,036,209 INFO 2026-05-28 23:05:59 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 01:40:07s. Time for last 1,000,000: 31s. Last read position: chr15:28,663,419 INFO 2026-05-28 23:06:08 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 01:40:16s. Time for last 1,000,000: 9s. Last read position: chr15:38,339,866 INFO 2026-05-28 23:06:14 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 01:40:22s. Time for last 1,000,000: 6s. Last read position: chr15:40,462,064 INFO 2026-05-28 23:06:24 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 01:40:32s. Time for last 1,000,000: 10s. Last read position: chr15:41,901,034 INFO 2026-05-28 23:06:35 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 01:40:43s. Time for last 1,000,000: 10s. Last read position: chr15:43,581,363 INFO 2026-05-28 23:06:44 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 01:40:52s. Time for last 1,000,000: 9s. Last read position: chr15:44,717,605 INFO 2026-05-28 23:06:54 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 01:41:02s. Time for last 1,000,000: 10s. Last read position: chr15:52,046,510 INFO 2026-05-28 23:07:09 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 01:41:16s. Time for last 1,000,000: 14s. Last read position: chr15:57,232,769 INFO 2026-05-28 23:07:24 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 01:41:32s. Time for last 1,000,000: 15s. Last read position: chr15:60,349,165 INFO 2026-05-28 23:07:52 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 01:41:59s. Time for last 1,000,000: 27s. Last read position: chr15:64,096,073 INFO 2026-05-28 23:07:59 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 01:42:07s. Time for last 1,000,000: 7s. Last read position: chr15:66,502,623 INFO 2026-05-28 23:08:12 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 01:42:20s. Time for last 1,000,000: 12s. Last read position: chr15:72,199,600 INFO 2026-05-28 23:08:25 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 01:42:32s. Time for last 1,000,000: 12s. Last read position: chr15:73,702,526 INFO 2026-05-28 23:08:36 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 01:42:44s. Time for last 1,000,000: 11s. Last read position: chr15:75,206,742 INFO 2026-05-28 23:08:47 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 01:42:55s. Time for last 1,000,000: 10s. Last read position: chr15:78,471,865 INFO 2026-05-28 23:08:57 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 01:43:05s. Time for last 1,000,000: 9s. Last read position: chr15:84,239,817 INFO 2026-05-28 23:09:06 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 01:43:14s. Time for last 1,000,000: 9s. Last read position: chr15:89,274,166 INFO 2026-05-28 23:09:21 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 01:43:29s. Time for last 1,000,000: 14s. Last read position: chr15:90,784,975 INFO 2026-05-28 23:09:35 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 01:43:43s. Time for last 1,000,000: 13s. Last read position: chr15:98,939,278 INFO 2026-05-28 23:09:42 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 01:43:50s. Time for last 1,000,000: 7s. Last read position: chr16:547,488 INFO 2026-05-28 23:09:53 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 01:44:01s. Time for last 1,000,000: 11s. Last read position: chr16:1,592,265 INFO 2026-05-28 23:10:20 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 01:44:28s. Time for last 1,000,000: 26s. Last read position: chr16:2,090,464 INFO 2026-05-28 23:10:40 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 01:44:48s. Time for last 1,000,000: 19s. Last read position: chr16:2,514,009 INFO 2026-05-28 23:10:51 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 01:44:59s. Time for last 1,000,000: 11s. Last read position: chr16:2,976,839 INFO 2026-05-28 23:11:02 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 01:45:09s. Time for last 1,000,000: 10s. Last read position: chr16:4,811,138 INFO 2026-05-28 23:11:11 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 01:45:19s. Time for last 1,000,000: 9s. Last read position: chr16:14,863,174 INFO 2026-05-28 23:11:22 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 01:45:30s. Time for last 1,000,000: 10s. Last read position: chr16:16,114,984 INFO 2026-05-28 23:11:27 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 01:45:34s. Time for last 1,000,000: 4s. Last read position: chr16:18,346,328 INFO 2026-05-28 23:11:34 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 01:45:42s. Time for last 1,000,000: 7s. Last read position: chr16:18,872,615 INFO 2026-05-28 23:11:39 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 01:45:47s. Time for last 1,000,000: 5s. Last read position: chr16:21,847,523 INFO 2026-05-28 23:11:44 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 01:45:52s. Time for last 1,000,000: 5s. Last read position: chr16:23,682,147 INFO 2026-05-28 23:11:57 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 01:46:05s. Time for last 1,000,000: 12s. Last read position: chr16:28,835,608 INFO 2026-05-28 23:12:03 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 01:46:10s. Time for last 1,000,000: 5s. Last read position: chr16:29,808,611 INFO 2026-05-28 23:12:13 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 01:46:21s. Time for last 1,000,000: 10s. Last read position: chr16:30,231,447 INFO 2026-05-28 23:12:19 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 01:46:27s. Time for last 1,000,000: 6s. Last read position: chr16:31,034,275 INFO 2026-05-28 23:12:28 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 01:46:35s. Time for last 1,000,000: 8s. Last read position: chr16:34,267,445 INFO 2026-05-28 23:12:36 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 01:46:44s. Time for last 1,000,000: 8s. Last read position: chr16:50,086,314 INFO 2026-05-28 23:12:49 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 01:46:57s. Time for last 1,000,000: 12s. Last read position: chr16:53,464,246 INFO 2026-05-28 23:12:58 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 01:47:05s. Time for last 1,000,000: 8s. Last read position: chr16:56,609,275 INFO 2026-05-28 23:13:17 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 01:47:25s. Time for last 1,000,000: 19s. Last read position: chr16:57,798,136 INFO 2026-05-28 23:13:32 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 01:47:39s. Time for last 1,000,000: 14s. Last read position: chr16:66,609,460 INFO 2026-05-28 23:13:42 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 01:47:49s. Time for last 1,000,000: 10s. Last read position: chr16:67,611,235 INFO 2026-05-28 23:13:55 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 01:48:03s. Time for last 1,000,000: 13s. Last read position: chr16:68,324,663 INFO 2026-05-28 23:14:02 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 01:48:10s. Time for last 1,000,000: 7s. Last read position: chr16:69,718,410 INFO 2026-05-28 23:14:21 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 01:48:29s. Time for last 1,000,000: 18s. Last read position: chr16:70,571,760 INFO 2026-05-28 23:14:29 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 01:48:37s. Time for last 1,000,000: 8s. Last read position: chr16:74,302,246 INFO 2026-05-28 23:14:38 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 01:48:46s. Time for last 1,000,000: 9s. Last read position: chr16:84,066,539 INFO 2026-05-28 23:14:45 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 01:48:53s. Time for last 1,000,000: 7s. Last read position: chr16:88,699,651 INFO 2026-05-28 23:15:03 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 01:49:11s. Time for last 1,000,000: 18s. Last read position: chr16:89,752,171 INFO 2026-05-28 23:15:19 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 01:49:26s. Time for last 1,000,000: 15s. Last read position: chr17:1,361,179 INFO 2026-05-28 23:15:30 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 01:49:38s. Time for last 1,000,000: 11s. Last read position: chr17:1,676,017 INFO 2026-05-28 23:15:42 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 01:49:49s. Time for last 1,000,000: 11s. Last read position: chr17:3,826,153 INFO 2026-05-28 23:15:53 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 01:50:01s. Time for last 1,000,000: 11s. Last read position: chr17:4,946,727 INFO 2026-05-28 23:16:02 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 01:50:10s. Time for last 1,000,000: 8s. Last read position: chr17:7,223,651 INFO 2026-05-28 23:16:11 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 01:50:19s. Time for last 1,000,000: 8s. Last read position: chr17:7,503,405 INFO 2026-05-28 23:16:23 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 01:50:31s. Time for last 1,000,000: 12s. Last read position: chr17:7,904,521 INFO 2026-05-28 23:16:36 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 01:50:44s. Time for last 1,000,000: 13s. Last read position: chr17:13,496,407 INFO 2026-05-28 23:16:43 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 01:50:51s. Time for last 1,000,000: 6s. Last read position: chr17:16,061,657 INFO 2026-05-28 23:16:57 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 01:51:05s. Time for last 1,000,000: 13s. Last read position: chr17:17,796,933 INFO 2026-05-28 23:17:10 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 01:51:18s. Time for last 1,000,000: 13s. Last read position: chr17:18,255,190 INFO 2026-05-28 23:17:28 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 01:51:36s. Time for last 1,000,000: 17s. Last read position: chr17:20,232,358 INFO 2026-05-28 23:17:42 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 01:51:50s. Time for last 1,000,000: 14s. Last read position: chr17:28,616,722 INFO 2026-05-28 23:17:55 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 01:52:03s. Time for last 1,000,000: 12s. Last read position: chr17:28,913,040 INFO 2026-05-28 23:18:06 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 01:52:14s. Time for last 1,000,000: 10s. Last read position: chr17:30,894,635 INFO 2026-05-28 23:18:18 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 01:52:25s. Time for last 1,000,000: 11s. Last read position: chr17:35,608,261 INFO 2026-05-28 23:18:30 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 01:52:38s. Time for last 1,000,000: 12s. Last read position: chr17:37,019,053 INFO 2026-05-28 23:18:42 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 01:52:50s. Time for last 1,000,000: 11s. Last read position: chr17:38,735,267 INFO 2026-05-28 23:18:53 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 01:53:00s. Time for last 1,000,000: 10s. Last read position: chr17:40,026,306 INFO 2026-05-28 23:19:01 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 01:53:09s. Time for last 1,000,000: 8s. Last read position: chr17:41,734,304 INFO 2026-05-28 23:19:22 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 01:53:29s. Time for last 1,000,000: 20s. Last read position: chr17:42,405,157 INFO 2026-05-28 23:19:32 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 01:53:40s. Time for last 1,000,000: 10s. Last read position: chr17:43,476,571 INFO 2026-05-28 23:19:43 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 01:53:51s. Time for last 1,000,000: 10s. Last read position: chr17:44,557,776 INFO 2026-05-28 23:19:58 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 01:54:05s. Time for last 1,000,000: 14s. Last read position: chr17:45,121,211 INFO 2026-05-28 23:20:06 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 01:54:14s. Time for last 1,000,000: 8s. Last read position: chr17:47,302,734 INFO 2026-05-28 23:20:21 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 01:54:28s. Time for last 1,000,000: 14s. Last read position: chr17:48,908,687 INFO 2026-05-28 23:20:32 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 01:54:40s. Time for last 1,000,000: 11s. Last read position: chr17:50,080,294 INFO 2026-05-28 23:20:43 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 01:54:50s. Time for last 1,000,000: 10s. Last read position: chr17:50,676,471 INFO 2026-05-28 23:20:56 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 01:55:03s. Time for last 1,000,000: 12s. Last read position: chr17:57,866,498 INFO 2026-05-28 23:21:03 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 01:55:11s. Time for last 1,000,000: 7s. Last read position: chr17:59,651,208 INFO 2026-05-28 23:21:16 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 01:55:23s. Time for last 1,000,000: 12s. Last read position: chr17:59,682,790 INFO 2026-05-28 23:21:31 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 01:55:38s. Time for last 1,000,000: 14s. Last read position: chr17:62,029,542 INFO 2026-05-28 23:21:42 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 01:55:50s. Time for last 1,000,000: 11s. Last read position: chr17:64,502,010 INFO 2026-05-28 23:21:57 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 01:56:04s. Time for last 1,000,000: 14s. Last read position: chr17:68,522,792 INFO 2026-05-28 23:22:10 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 01:56:18s. Time for last 1,000,000: 13s. Last read position: chr17:74,872,890 INFO 2026-05-28 23:22:23 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 01:56:31s. Time for last 1,000,000: 13s. Last read position: chr17:75,739,993 INFO 2026-05-28 23:22:40 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 01:56:48s. Time for last 1,000,000: 17s. Last read position: chr17:76,089,695 INFO 2026-05-28 23:22:53 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 01:57:01s. Time for last 1,000,000: 13s. Last read position: chr17:78,168,664 INFO 2026-05-28 23:23:00 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 01:57:08s. Time for last 1,000,000: 6s. Last read position: chr17:80,202,160 INFO 2026-05-28 23:23:14 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 01:57:22s. Time for last 1,000,000: 14s. Last read position: chr17:81,511,363 INFO 2026-05-28 23:23:37 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 01:57:44s. Time for last 1,000,000: 22s. Last read position: chr17:81,847,039 INFO 2026-05-28 23:23:56 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 01:58:04s. Time for last 1,000,000: 19s. Last read position: chr17:82,057,068 INFO 2026-05-28 23:24:08 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 01:58:16s. Time for last 1,000,000: 11s. Last read position: chr17:82,519,957 INFO 2026-05-28 23:24:20 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 01:58:28s. Time for last 1,000,000: 11s. Last read position: chr18:3,456,521 INFO 2026-05-28 23:24:30 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 01:58:38s. Time for last 1,000,000: 10s. Last read position: chr18:9,561,992 INFO 2026-05-28 23:24:41 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 01:58:48s. Time for last 1,000,000: 10s. Last read position: chr18:26,548,279 INFO 2026-05-28 23:24:52 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 01:59:00s. Time for last 1,000,000: 11s. Last read position: chr18:55,254,676 INFO 2026-05-28 23:25:07 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 01:59:15s. Time for last 1,000,000: 14s. Last read position: chr18:75,202,128 INFO 2026-05-28 23:25:15 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 01:59:23s. Time for last 1,000,000: 8s. Last read position: chr19:804,380 INFO 2026-05-28 23:25:27 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 01:59:35s. Time for last 1,000,000: 12s. Last read position: chr19:1,106,242 INFO 2026-05-28 23:25:37 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 01:59:45s. Time for last 1,000,000: 10s. Last read position: chr19:1,460,181 INFO 2026-05-28 23:25:44 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 01:59:52s. Time for last 1,000,000: 6s. Last read position: chr19:2,026,808 INFO 2026-05-28 23:25:52 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 02:00:00s. Time for last 1,000,000: 8s. Last read position: chr19:2,435,078 INFO 2026-05-28 23:26:00 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 02:00:07s. Time for last 1,000,000: 7s. Last read position: chr19:3,543,178 INFO 2026-05-28 23:26:06 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 02:00:14s. Time for last 1,000,000: 6s. Last read position: chr19:4,409,439 INFO 2026-05-28 23:26:13 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 02:00:21s. Time for last 1,000,000: 6s. Last read position: chr19:4,950,954 INFO 2026-05-28 23:26:27 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 02:00:34s. Time for last 1,000,000: 13s. Last read position: chr19:5,699,141 INFO 2026-05-28 23:26:33 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 02:00:41s. Time for last 1,000,000: 6s. Last read position: chr19:6,374,209 INFO 2026-05-28 23:26:41 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 02:00:49s. Time for last 1,000,000: 7s. Last read position: chr19:7,519,935 INFO 2026-05-28 23:26:50 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 02:00:58s. Time for last 1,000,000: 9s. Last read position: chr19:8,403,415 INFO 2026-05-28 23:27:17 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 02:01:24s. Time for last 1,000,000: 26s. Last read position: chr19:10,252,604 INFO 2026-05-28 23:27:32 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 02:01:40s. Time for last 1,000,000: 15s. Last read position: chr19:11,012,946 INFO 2026-05-28 23:27:54 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 02:02:02s. Time for last 1,000,000: 21s. Last read position: chr19:12,649,956 INFO 2026-05-28 23:28:05 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 02:02:13s. Time for last 1,000,000: 11s. Last read position: chr19:12,954,456 INFO 2026-05-28 23:28:14 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 02:02:21s. Time for last 1,000,000: 8s. Last read position: chr19:14,092,006 INFO 2026-05-28 23:28:22 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 02:02:30s. Time for last 1,000,000: 8s. Last read position: chr19:14,516,105 INFO 2026-05-28 23:28:32 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 02:02:40s. Time for last 1,000,000: 9s. Last read position: chr19:15,244,751 INFO 2026-05-28 23:28:46 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 02:02:54s. Time for last 1,000,000: 13s. Last read position: chr19:16,519,254 INFO 2026-05-28 23:28:57 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 02:03:05s. Time for last 1,000,000: 10s. Last read position: chr19:17,341,144 INFO 2026-05-28 23:29:02 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 02:03:10s. Time for last 1,000,000: 5s. Last read position: chr19:18,419,613 INFO 2026-05-28 23:29:11 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 02:03:19s. Time for last 1,000,000: 8s. Last read position: chr19:19,010,121 INFO 2026-05-28 23:29:19 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 02:03:27s. Time for last 1,000,000: 8s. Last read position: chr19:27,766,430 INFO 2026-05-28 23:29:25 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 02:03:33s. Time for last 1,000,000: 5s. Last read position: chr19:34,365,264 INFO 2026-05-28 23:29:39 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 02:03:46s. Time for last 1,000,000: 13s. Last read position: chr19:35,269,472 INFO 2026-05-28 23:29:48 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 02:03:56s. Time for last 1,000,000: 9s. Last read position: chr19:35,787,269 INFO 2026-05-28 23:30:06 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 02:04:14s. Time for last 1,000,000: 17s. Last read position: chr19:37,698,696 INFO 2026-05-28 23:30:13 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 02:04:21s. Time for last 1,000,000: 7s. Last read position: chr19:38,717,217 INFO 2026-05-28 23:30:24 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 02:04:32s. Time for last 1,000,000: 11s. Last read position: chr19:39,176,628 INFO 2026-05-28 23:30:34 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 02:04:42s. Time for last 1,000,000: 9s. Last read position: chr19:39,972,554 INFO 2026-05-28 23:30:51 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 02:04:58s. Time for last 1,000,000: 16s. Last read position: chr19:40,578,197 INFO 2026-05-28 23:31:06 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 02:05:14s. Time for last 1,000,000: 15s. Last read position: chr19:41,292,394 INFO 2026-05-28 23:31:19 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 02:05:27s. Time for last 1,000,000: 12s. Last read position: chr19:42,242,381 INFO 2026-05-28 23:31:24 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 02:05:32s. Time for last 1,000,000: 5s. Last read position: chr19:42,290,283 INFO 2026-05-28 23:31:34 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 02:05:42s. Time for last 1,000,000: 9s. Last read position: chr19:42,344,030 INFO 2026-05-28 23:31:45 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 02:05:53s. Time for last 1,000,000: 10s. Last read position: chr19:43,774,312 INFO 2026-05-28 23:31:51 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 02:05:59s. Time for last 1,000,000: 6s. Last read position: chr19:44,992,641 INFO 2026-05-28 23:32:01 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 02:06:09s. Time for last 1,000,000: 9s. Last read position: chr19:45,521,320 INFO 2026-05-28 23:32:09 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 02:06:16s. Time for last 1,000,000: 7s. Last read position: chr19:45,885,134 INFO 2026-05-28 23:32:18 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 02:06:26s. Time for last 1,000,000: 9s. Last read position: chr19:46,787,557 INFO 2026-05-28 23:32:25 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 02:06:33s. Time for last 1,000,000: 6s. Last read position: chr19:48,137,586 INFO 2026-05-28 23:32:33 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 02:06:41s. Time for last 1,000,000: 8s. Last read position: chr19:48,965,787 INFO 2026-05-28 23:32:42 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 02:06:50s. Time for last 1,000,000: 9s. Last read position: chr19:49,557,108 INFO 2026-05-28 23:32:49 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 02:06:56s. Time for last 1,000,000: 6s. Last read position: chr19:49,798,866 INFO 2026-05-28 23:33:03 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 02:07:11s. Time for last 1,000,000: 14s. Last read position: chr19:50,407,050 INFO 2026-05-28 23:33:10 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 02:07:18s. Time for last 1,000,000: 7s. Last read position: chr19:52,849,145 INFO 2026-05-28 23:33:18 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 02:07:26s. Time for last 1,000,000: 7s. Last read position: chr19:54,452,700 INFO 2026-05-28 23:33:26 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 02:07:33s. Time for last 1,000,000: 7s. Last read position: chr19:55,453,226 INFO 2026-05-28 23:33:30 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 02:07:37s. Time for last 1,000,000: 4s. Last read position: chr19:57,308,077 INFO 2026-05-28 23:33:35 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 02:07:43s. Time for last 1,000,000: 5s. Last read position: chr19:58,556,755 INFO 2026-05-28 23:33:45 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 02:07:53s. Time for last 1,000,000: 10s. Last read position: chr20:3,026,694 INFO 2026-05-28 23:33:51 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 02:07:58s. Time for last 1,000,000: 5s. Last read position: chr20:4,699,705 INFO 2026-05-28 23:33:59 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 02:08:07s. Time for last 1,000,000: 8s. Last read position: chr20:17,636,598 INFO 2026-05-28 23:34:08 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 02:08:16s. Time for last 1,000,000: 9s. Last read position: chr20:25,269,204 INFO 2026-05-28 23:34:18 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 02:08:26s. Time for last 1,000,000: 10s. Last read position: chr20:32,445,810 INFO 2026-05-28 23:34:27 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 02:08:35s. Time for last 1,000,000: 9s. Last read position: chr20:34,996,753 INFO 2026-05-28 23:34:43 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 02:08:50s. Time for last 1,000,000: 15s. Last read position: chr20:36,606,047 INFO 2026-05-28 23:34:51 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 02:08:59s. Time for last 1,000,000: 8s. Last read position: chr20:41,169,486 INFO 2026-05-28 23:35:06 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 02:09:14s. Time for last 1,000,000: 15s. Last read position: chr20:45,812,654 INFO 2026-05-28 23:35:20 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 02:09:27s. Time for last 1,000,000: 13s. Last read position: chr20:49,270,693 INFO 2026-05-28 23:35:24 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 02:09:32s. Time for last 1,000,000: 4s. Last read position: chr20:56,365,122 INFO 2026-05-28 23:35:34 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 02:09:42s. Time for last 1,000,000: 9s. Last read position: chr20:58,895,668 INFO 2026-05-28 23:35:50 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 02:09:58s. Time for last 1,000,000: 16s. Last read position: chr20:62,303,604 INFO 2026-05-28 23:36:03 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 02:10:10s. Time for last 1,000,000: 12s. Last read position: chr20:62,391,336 INFO 2026-05-28 23:36:08 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 02:10:15s. Time for last 1,000,000: 5s. Last read position: chr20:63,569,461 INFO 2026-05-28 23:36:14 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 02:10:22s. Time for last 1,000,000: 6s. Last read position: chr21:6,665,188 INFO 2026-05-28 23:36:15 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 02:10:23s. Time for last 1,000,000: 0s. Last read position: chr21:8,216,034 INFO 2026-05-28 23:36:16 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 02:10:24s. Time for last 1,000,000: 0s. Last read position: chr21:8,255,907 INFO 2026-05-28 23:36:17 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 02:10:25s. Time for last 1,000,000: 0s. Last read position: chr21:8,396,229 INFO 2026-05-28 23:36:18 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 02:10:26s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,460 INFO 2026-05-28 23:36:19 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 02:10:27s. Time for last 1,000,000: 0s. Last read position: chr21:8,442,396 INFO 2026-05-28 23:36:20 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 02:10:28s. Time for last 1,000,000: 0s. Last read position: chr21:8,987,957 INFO 2026-05-28 23:36:32 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 02:10:40s. Time for last 1,000,000: 12s. Last read position: chr21:32,761,068 INFO 2026-05-28 23:36:42 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 02:10:50s. Time for last 1,000,000: 10s. Last read position: chr21:37,124,688 INFO 2026-05-28 23:36:59 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 02:11:07s. Time for last 1,000,000: 16s. Last read position: chr21:44,312,199 INFO 2026-05-28 23:37:09 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 02:11:17s. Time for last 1,000,000: 10s. Last read position: chr21:45,998,923 INFO 2026-05-28 23:37:21 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 02:11:29s. Time for last 1,000,000: 12s. Last read position: chr21:46,431,636 INFO 2026-05-28 23:37:33 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 02:11:41s. Time for last 1,000,000: 11s. Last read position: chr22:19,515,002 INFO 2026-05-28 23:37:45 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 02:11:53s. Time for last 1,000,000: 12s. Last read position: chr22:21,695,022 INFO 2026-05-28 23:37:56 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 02:12:03s. Time for last 1,000,000: 10s. Last read position: chr22:26,488,449 INFO 2026-05-28 23:38:09 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 02:12:17s. Time for last 1,000,000: 13s. Last read position: chr22:29,292,519 INFO 2026-05-28 23:38:25 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 02:12:32s. Time for last 1,000,000: 15s. Last read position: chr22:30,425,877 INFO 2026-05-28 23:38:38 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 02:12:46s. Time for last 1,000,000: 13s. Last read position: chr22:36,285,745 INFO 2026-05-28 23:38:45 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 02:12:53s. Time for last 1,000,000: 6s. Last read position: chr22:37,495,879 INFO 2026-05-28 23:38:54 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 02:13:02s. Time for last 1,000,000: 8s. Last read position: chr22:38,495,817 INFO 2026-05-28 23:39:01 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 02:13:09s. Time for last 1,000,000: 7s. Last read position: chr22:40,411,842 INFO 2026-05-28 23:39:12 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 02:13:20s. Time for last 1,000,000: 11s. Last read position: chr22:41,880,950 INFO 2026-05-28 23:39:19 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 02:13:27s. Time for last 1,000,000: 6s. Last read position: chr22:45,547,100 INFO 2026-05-28 23:39:28 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 02:13:36s. Time for last 1,000,000: 9s. Last read position: chr22:50,285,811 INFO 2026-05-28 23:39:38 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 02:13:46s. Time for last 1,000,000: 9s. Last read position: chrX:1,417,883 INFO 2026-05-28 23:39:43 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 02:13:51s. Time for last 1,000,000: 5s. Last read position: chrX:12,976,245 INFO 2026-05-28 23:39:50 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 02:13:58s. Time for last 1,000,000: 6s. Last read position: chrX:19,542,123 INFO 2026-05-28 23:39:58 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 02:14:06s. Time for last 1,000,000: 8s. Last read position: chrX:30,855,529 INFO 2026-05-28 23:40:12 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 02:14:20s. Time for last 1,000,000: 13s. Last read position: chrX:41,223,262 INFO 2026-05-28 23:40:37 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 02:14:45s. Time for last 1,000,000: 24s. Last read position: chrX:47,209,944 INFO 2026-05-28 23:40:46 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 02:14:54s. Time for last 1,000,000: 9s. Last read position: chrX:48,600,593 INFO 2026-05-28 23:40:59 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 02:15:07s. Time for last 1,000,000: 12s. Last read position: chrX:49,077,863 INFO 2026-05-28 23:41:06 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 02:15:14s. Time for last 1,000,000: 7s. Last read position: chrX:53,405,597 INFO 2026-05-28 23:41:32 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 02:15:40s. Time for last 1,000,000: 26s. Last read position: chrX:53,937,918 INFO 2026-05-28 23:41:41 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 02:15:49s. Time for last 1,000,000: 8s. Last read position: chrX:65,739,750 INFO 2026-05-28 23:41:56 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 02:16:04s. Time for last 1,000,000: 15s. Last read position: chrX:71,381,793 INFO 2026-05-28 23:42:10 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 02:16:18s. Time for last 1,000,000: 13s. Last read position: chrX:77,681,634 INFO 2026-05-28 23:42:19 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 02:16:27s. Time for last 1,000,000: 9s. Last read position: chrX:101,625,097 INFO 2026-05-28 23:42:27 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 02:16:35s. Time for last 1,000,000: 7s. Last read position: chrX:113,775,193 INFO 2026-05-28 23:42:32 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 02:16:40s. Time for last 1,000,000: 4s. Last read position: chrX:120,447,861 INFO 2026-05-28 23:42:48 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 02:16:56s. Time for last 1,000,000: 15s. Last read position: chrX:130,067,082 INFO 2026-05-28 23:42:58 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 02:17:05s. Time for last 1,000,000: 9s. Last read position: chrX:136,874,164 INFO 2026-05-28 23:43:06 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 02:17:14s. Time for last 1,000,000: 8s. Last read position: chrX:149,942,412 INFO 2026-05-28 23:43:12 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 02:17:20s. Time for last 1,000,000: 6s. Last read position: chrX:153,725,570 INFO 2026-05-28 23:43:22 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 02:17:30s. Time for last 1,000,000: 9s. Last read position: chrX:153,952,672 INFO 2026-05-28 23:43:31 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 02:17:39s. Time for last 1,000,000: 8s. Last read position: chrX:154,348,724 INFO 2026-05-28 23:43:46 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 02:17:53s. Time for last 1,000,000: 14s. Last read position: chrX:154,353,941 INFO 2026-05-28 23:44:18 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 02:18:26s. Time for last 1,000,000: 32s. Last read position: chrX:154,360,447 INFO 2026-05-28 23:45:03 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 02:19:11s. Time for last 1,000,000: 45s. Last read position: chrX:154,366,330 INFO 2026-05-28 23:45:42 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 02:19:50s. Time for last 1,000,000: 38s. Last read position: chrX:154,441,171 INFO 2026-05-28 23:45:49 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 02:19:57s. Time for last 1,000,000: 6s. Last read position: chrX:154,547,717 INFO 2026-05-28 23:45:55 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 02:20:03s. Time for last 1,000,000: 6s. Last read position: chrM:2,443 INFO 2026-05-28 23:45:56 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 02:20:04s. Time for last 1,000,000: 1s. Last read position: GL000220.1:108,520 INFO 2026-05-28 23:45:57 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 02:20:05s. Time for last 1,000,000: 0s. Last read position: GL000220.1:116,004 INFO 2026-05-28 23:45:57 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 02:20:05s. Time for last 1,000,000: 0s. Last read position: GL000220.1:156,576 INFO 2026-05-28 23:45:58 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 02:20:06s. Time for last 1,000,000: 0s. Last read position: GL000220.1:160,621 INFO 2026-05-28 23:45:59 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 02:20:07s. Time for last 1,000,000: 0s. Last read position: KI270733.1:129,682 INFO 2026-05-28 23:46:00 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 02:20:07s. Time for last 1,000,000: 0s. Last read position: KI270733.1:133,598 INFO 2026-05-28 23:46:00 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 02:20:08s. Time for last 1,000,000: 0s. Last read position: KI270733.1:174,758 INFO 2026-05-28 23:46:01 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 02:20:09s. Time for last 1,000,000: 0s. Last read position: KI270733.1:178,682 INFO 2026-05-28 23:46:02 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 02:20:09s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-05-28 23:46:02 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 02:20:10s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-05-28 23:46:03 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 02:20:11s. Time for last 1,000,000: 0s. Last read position: */* [Thu May 28 23:46:05 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 140.26 minutes. Runtime.totalMemory()=3497000960