Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/f449d8b120a24e15822fc7eb25ef75/22Rv1_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/f789d11d3dfd58975ba1c1dd754edc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/4baa8d4f8d0b3945cf2ebf580d75c1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/4179bca64d0780950358b97c82e8f0/22Rv1_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/4baa8d4f8d0b3945cf2ebf580d75c1/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 6518749
[W::hts_idx_load3] The index file is older than the data file: 22Rv1_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	6518749
Known Splicing Events:	6398540
Partial Novel Splicing Events:	42071
Novel Splicing Events:	73405
Filtered Splicing Events:	4733

Total splicing  Junctions:	129408
Known Splicing Junctions:	119806
Partial Novel Splicing Junctions:	4598
Novel Splicing Junctions:	5004

===================================================================
Create BED file ...
Create Interact file ...