Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/5d18482a05cb91197affe17e594923/FFPE_HD789_01_RNA_0002_B23LG7FLT4_1_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/9985bbacbced6fa77a93d03b5c7d5b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/9985bbacbced6fa77a93d03b5c7d5b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/5d18482a05cb91197affe17e594923/FFPE_HD789_01_RNA_0002_B23LG7FLT4_1_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory