Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/278e745aa6471c36eb394d2cb8f8ba/A673_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/f789d11d3dfd58975ba1c1dd754edc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/428fe97c942913298560253ca70532/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/428fe97c942913298560253ca70532/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/cc27e81fbc52ec9b867b07a3cda21c/A673_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 306433525
[W::hts_idx_load3] The index file is older than the data file: A673_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	306433525
Known Splicing Events:	304029670
Partial Novel Splicing Events:	1622446
Novel Splicing Events:	694306
Filtered Splicing Events:	87103

Total splicing  Junctions:	599663
Known Splicing Junctions:	277258
Partial Novel Splicing Junctions:	179214
Novel Splicing Junctions:	143191

===================================================================
Create BED file ...
Create Interact file ...