Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/b092b424de6b2ad1ab9e4c79dd4d34/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/b092b424de6b2ad1ab9e4c79dd4d34/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/9934bc9560300d8a87271c8a8f84d5/MCF7_FFPE_RNA_0001_B23LG7FLT4_1_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/9934bc9560300d8a87271c8a8f84d5/MCF7_FFPE_RNA_0001_B23LG7FLT4_1_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory