Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/25541598533da4cf081172c5abc42c/KG1_FFPE_01_RNA_0003_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/cb984e9b3da5f049b9bf346904238e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/cb984e9b3da5f049b9bf346904238e/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory