File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/a14b2746f81913b307f3ac7935ce53/.command.log
Size
748 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (FFPE_HD789_01_RNA_0002_B23LG7FLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/a14b2746f81913b307f3ac7935ce53/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/d82ed89d065ad06a7c7f14c968e98b/FFPE_HD789_01_RNA_0002_B23LG7FLT4_1.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/a14b2746f81913b307f3ac7935ce53/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  FFPE_HD789_01_RNA_0002_B23LG7FLT4_1: vaf_p90=0.705882 -> CONTAMINATED (~63.3%)

Output saved to: FFPE_HD789_01_RNA_0002_B23LG7FLT4_1.predictions.csv
Summary: 1/1 samples flagged as contaminated