Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/8bde3efa82b1e8f1eb40464e3330e4/OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/e07bd61967f791ef4a2ac809a40452/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/12c82fb491644561d8884bf33db2a8/OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/e07bd61967f791ef4a2ac809a40452/.command.run
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory