File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/5f347e842709d1c3db78bc86f71083/.command.err
Size
44.3 KB
Attempt
-ctat genome lib [/tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.UBtauA2IVL/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary
-sample contains 73993705 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir  -J /tmp/nxf.UBtauA2IVL/BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1.Chimeric.out.junction  -O /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.UBtauA2IVL/BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

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[1320000], rate=56170.21/min -building interval tree based on /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

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[1320000], rate=55539.97/min -building interval tree based on /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

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[1310000], rate=49558.64/min -building interval tree based on /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

[10000], rate=120000.00/min 
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[30000], rate=105882.35/min 
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[1290000], rate=48435.54/min 
[1300000], rate=48567.87/min 
[1310000], rate=48698.88/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 9000000.00 reads per min processed...  
 8000000.00 reads per min processed...  
 7500000.00 reads per min processed...  
 7200000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 5500000.00 reads per min processed...  
 5538461.54 reads per min processed...  
 5571428.57 reads per min processed...  
 5600000.00 reads per min processed...  
 5294117.65 reads per min processed...  
 5333333.33 reads per min processed...  
 5100000.00 reads per min processed...  
 4909090.91 reads per min processed...  
 4956521.74 reads per min processed...  
 4800000.00 reads per min processed...  
 4846153.85 reads per min processed...  
 4714285.71 reads per min processed...  
 4758620.69 reads per min processed...  
 4800000.00 reads per min processed...  
 4838709.68 reads per min processed...  
 4727272.73 reads per min processed...  
 4764705.88 reads per min processed...  
 4800000.00 reads per min processed...  
 4833333.33 reads per min processed...  
 5000000.00 reads per min processed...  
 5027027.03 reads per min processed...  
 5052631.58 reads per min processed...  
 5076923.08 reads per min processed...  
 5100000.00 reads per min processed...  
 5121951.22 reads per min processed...  
 5142857.14 reads per min processed...  
 5045454.55 reads per min processed...  
 5066666.67 reads per min processed...  
 5086956.52 reads per min processed...  
 5106382.98 reads per min processed...  
 5125000.00 reads per min processed...  
 5040000.00 reads per min processed...  
 5058823.53 reads per min processed...  
 5076923.08 reads per min processed...  
 5094339.62 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.UBtauA2IVL/BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -72550.998194
EM: Round [1] log likelihood: -72416.692722
EM: Round [2] log likelihood: -72362.834372
EM: Round [3] log likelihood: -72336.358065
EM: Round [4] log likelihood: -72322.141017
EM: Round [5] log likelihood: -72314.150348
EM: Round [6] log likelihood: -72309.507319
EM: Round [7] log likelihood: -72306.717746
EM: Round [8] log likelihood: -72304.977907
EM: Round [9] log likelihood: -72303.848318
EM: Round [10] log likelihood: -72303.084940
EM: Round [11] log likelihood: -72302.549346
EM: Round [12] log likelihood: -72302.160812
EM: Round [13] log likelihood: -72301.870734
EM: Round [14] log likelihood: -72301.648828
EM: Round [15] log likelihood: -72301.475571
EM: Round [16] log likelihood: -72301.337950
EM: Round [17] log likelihood: -72301.227034
EM: Round [18] log likelihood: -72301.136518
EM: Round [19] log likelihood: -72301.061847
EM: Round [20] log likelihood: -72300.999662
EM: Round [21] log likelihood: -72300.947440
EM: Round [22] log likelihood: -72300.903255
EM: Round [23] log likelihood: -72300.865619
EM: Round [24] log likelihood: -72300.833364
EM: Round [25] log likelihood: -72300.805568
EM: Round [26] log likelihood: -72300.781492
EM: Round [27] log likelihood: -72300.760541
EM: Round [28] log likelihood: -72300.742231
EM: Round [29] log likelihood: -72300.726164
EM: Round [30] log likelihood: -72300.712013
EM: Round [31] log likelihood: -72300.699507
EM: Round [32] log likelihood: -72300.688416
EM: Round [33] log likelihood: -72300.678552
EM: Round [34] log likelihood: -72300.669751
EM: Round [35] log likelihood: -72300.661878
EM: Round [36] log likelihood: -72300.654816
EM: Round [37] log likelihood: -72300.648464
EM: Round [38] log likelihood: -72300.642738
EM: Round [39] log likelihood: -72300.637562
EM: Round [40] log likelihood: -72300.632874
EM: Round [41] log likelihood: -72300.628617
EM: Round [42] log likelihood: -72300.624743
EM: Round [43] log likelihood: -72300.621210
EM: Round [44] log likelihood: -72300.617981
EM: Round [45] log likelihood: -72300.615023
EM: Round [46] log likelihood: -72300.612309
EM: Round [47] log likelihood: -72300.609812
EM: Round [48] log likelihood: -72300.607511
EM: Round [49] log likelihood: -72300.605387
EM: Round [50] log likelihood: -72300.603421
EM: Round [51] log likelihood: -72300.601599
EM: Round [52] log likelihood: -72300.599906
EM: Round [53] log likelihood: -72300.598331
EM: Round [54] log likelihood: -72300.596863
EM: Round [55] log likelihood: -72300.595493
EM: Round [56] log likelihood: -72300.594210
EM: Round [57] log likelihood: -72300.593008
EM: Round [58] log likelihood: -72300.591880
EM: Round [59] log likelihood: -72300.590819
EM: Round [60] log likelihood: -72300.589821
EM: Round [61] log likelihood: -72300.588879
EM: Round [62] log likelihood: -72300.587989
EM: Round [63] log likelihood: -72300.587148
EM: Round [64] log likelihood: -72300.586351
EM: Round [65] log likelihood: -72300.585595
EM: Round [66] log likelihood: -72300.584878
EM: Round [67] log likelihood: -72300.584195
EM: Round [68] log likelihood: -72300.583546
EM: Round [69] log likelihood: -72300.582928
EM: Round [70] log likelihood: -72300.582337
EM: Round [71] log likelihood: -72300.581774
EM: Round [72] log likelihood: -72300.581235
EM: Round [73] log likelihood: -72300.580720
EM: Round [74] log likelihood: -72300.580227
EM: Round [75] log likelihood: -72300.579754
EM: Round [76] log likelihood: -72300.579301
EM: Round [77] log likelihood: -72300.578866
EM: Round [78] log likelihood: -72300.578448
EM: Round [79] log likelihood: -72300.578046
EM: Round [80] log likelihood: -72300.577660
EM: Round [81] log likelihood: -72300.577288
EM: Round [82] log likelihood: -72300.576931
EM: Round [83] log likelihood: -72300.576586
EM: Round [84] log likelihood: -72300.576254
EM: Round [85] log likelihood: -72300.575933
EM: Round [86] log likelihood: -72300.575624
EM: Round [87] log likelihood: -72300.575325
EM: Round [88] log likelihood: -72300.575037
EM: Round [89] log likelihood: -72300.574758
EM: Round [90] log likelihood: -72300.574489
EM: Round [91] log likelihood: -72300.574229
EM: Round [92] log likelihood: -72300.573977
EM: Round [93] log likelihood: -72300.573734
EM: Round [94] log likelihood: -72300.573498
EM: Round [95] log likelihood: -72300.573269
EM: Round [96] log likelihood: -72300.573048
EM: Round [97] log likelihood: -72300.572834
EM: Round [98] log likelihood: -72300.572626
EM: Round [99] log likelihood: -72300.572425
EM: Round [100] log likelihood: -72300.572230
EM: Round [101] log likelihood: -72300.572041
EM: Round [102] log likelihood: -72300.571857
EM: Round [103] log likelihood: -72300.571679
EM: Round [104] log likelihood: -72300.571506
EM: Round [105] log likelihood: -72300.571338
EM: Round [106] log likelihood: -72300.571175
EM: Round [107] log likelihood: -72300.571017
EM: Round [108] log likelihood: -72300.570863
EM: Round [109] log likelihood: -72300.570714
EM: Round [110] log likelihood: -72300.570568
EM: Round [111] log likelihood: -72300.570427
EM: Round [112] log likelihood: -72300.570290
EM: Round [113] log likelihood: -72300.570156
EM: Round [114] log likelihood: -72300.570027
EM: Round [115] log likelihood: -72300.569900
EM: Round [116] log likelihood: -72300.569777
EM: Round [117] log likelihood: -72300.569658
EM: Round [118] log likelihood: -72300.569541
EM: Round [119] log likelihood: -72300.569428
EM: Round [120] log likelihood: -72300.569317
EM: Round [121] log likelihood: -72300.569210
EM: Round [122] log likelihood: -72300.569105
EM: Round [123] log likelihood: -72300.569003
EM: Round [124] log likelihood: -72300.568903
EM: Stopping iterations at round 124 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -72517.235367
EM: Round [1] log likelihood: -72399.544741
EM: Round [2] log likelihood: -72353.262999
EM: Round [3] log likelihood: -72330.655872
EM: Round [4] log likelihood: -72318.578444
EM: Round [5] log likelihood: -72311.838947
EM: Round [6] log likelihood: -72307.953286
EM: Round [7] log likelihood: -72305.633771
EM: Round [8] log likelihood: -72304.193802
EM: Round [9] log likelihood: -72303.261844
EM: Round [10] log likelihood: -72302.633344
EM: Round [11] log likelihood: -72302.192990
EM: Round [12] log likelihood: -72301.873850
EM: Round [13] log likelihood: -72301.635758
EM: Round [14] log likelihood: -72301.453747
EM: Round [15] log likelihood: -72301.311742
EM: Round [16] log likelihood: -72301.199043
EM: Round [17] log likelihood: -72301.108300
EM: Round [18] log likelihood: -72301.034330
EM: Round [19] log likelihood: -72300.973383
EM: Round [20] log likelihood: -72300.922695
EM: Round [21] log likelihood: -72300.880189
EM: Round [22] log likelihood: -72300.844278
EM: Round [23] log likelihood: -72300.813738
EM: Round [24] log likelihood: -72300.787607
EM: Round [25] log likelihood: -72300.765126
EM: Round [26] log likelihood: -72300.745687
EM: Round [27] log likelihood: -72300.728801
EM: Round [28] log likelihood: -72300.714069
EM: Round [29] log likelihood: -72300.701165
EM: Round [30] log likelihood: -72300.689819
EM: Round [31] log likelihood: -72300.679809
EM: Round [32] log likelihood: -72300.670948
EM: Round [33] log likelihood: -72300.663080
EM: Round [34] log likelihood: -72300.656072
EM: Round [35] log likelihood: -72300.649813
EM: Round [36] log likelihood: -72300.644207
EM: Round [37] log likelihood: -72300.639172
EM: Round [38] log likelihood: -72300.634640
EM: Round [39] log likelihood: -72300.630549
EM: Round [40] log likelihood: -72300.626847
EM: Round [41] log likelihood: -72300.623490
EM: Round [42] log likelihood: -72300.620438
EM: Round [43] log likelihood: -72300.617657
EM: Round [44] log likelihood: -72300.615118
EM: Round [45] log likelihood: -72300.612793
EM: Round [46] log likelihood: -72300.610661
EM: Round [47] log likelihood: -72300.608701
EM: Round [48] log likelihood: -72300.606896
EM: Round [49] log likelihood: -72300.605229
EM: Round [50] log likelihood: -72300.603687
EM: Round [51] log likelihood: -72300.602258
EM: Round [52] log likelihood: -72300.600931
EM: Round [53] log likelihood: -72300.599696
EM: Round [54] log likelihood: -72300.598544
EM: Round [55] log likelihood: -72300.597469
EM: Round [56] log likelihood: -72300.596462
EM: Round [57] log likelihood: -72300.595519
EM: Round [58] log likelihood: -72300.594633
EM: Round [59] log likelihood: -72300.593800
EM: Round [60] log likelihood: -72300.593015
EM: Round [61] log likelihood: -72300.592275
EM: Round [62] log likelihood: -72300.591575
EM: Round [63] log likelihood: -72300.590913
EM: Round [64] log likelihood: -72300.590286
EM: Round [65] log likelihood: -72300.589691
EM: Round [66] log likelihood: -72300.589125
EM: Round [67] log likelihood: -72300.588588
EM: Round [68] log likelihood: -72300.588076
EM: Round [69] log likelihood: -72300.587588
EM: Round [70] log likelihood: -72300.587122
EM: Round [71] log likelihood: -72300.586678
EM: Round [72] log likelihood: -72300.586253
EM: Round [73] log likelihood: -72300.585846
EM: Round [74] log likelihood: -72300.585457
EM: Round [75] log likelihood: -72300.585083
EM: Round [76] log likelihood: -72300.584725
EM: Round [77] log likelihood: -72300.584382
EM: Round [78] log likelihood: -72300.584052
EM: Round [79] log likelihood: -72300.583735
EM: Round [80] log likelihood: -72300.583430
EM: Round [81] log likelihood: -72300.583136
EM: Round [82] log likelihood: -72300.582854
EM: Round [83] log likelihood: -72300.582581
EM: Round [84] log likelihood: -72300.582319
EM: Round [85] log likelihood: -72300.582066
EM: Round [86] log likelihood: -72300.581822
EM: Round [87] log likelihood: -72300.581587
EM: Round [88] log likelihood: -72300.581359
EM: Round [89] log likelihood: -72300.581140
EM: Round [90] log likelihood: -72300.580927
EM: Round [91] log likelihood: -72300.580722
EM: Round [92] log likelihood: -72300.580524
EM: Round [93] log likelihood: -72300.580332
EM: Round [94] log likelihood: -72300.580146
EM: Round [95] log likelihood: -72300.579967
EM: Round [96] log likelihood: -72300.579793
EM: Round [97] log likelihood: -72300.579624
EM: Round [98] log likelihood: -72300.579461
EM: Round [99] log likelihood: -72300.579302
EM: Round [100] log likelihood: -72300.579149
EM: Round [101] log likelihood: -72300.579000
EM: Round [102] log likelihood: -72300.578856
EM: Round [103] log likelihood: -72300.578716
EM: Round [104] log likelihood: -72300.578580
EM: Round [105] log likelihood: -72300.578448
EM: Round [106] log likelihood: -72300.578320
EM: Round [107] log likelihood: -72300.578196
EM: Round [108] log likelihood: -72300.578075
EM: Round [109] log likelihood: -72300.577958
EM: Round [110] log likelihood: -72300.577844
EM: Round [111] log likelihood: -72300.577733
EM: Round [112] log likelihood: -72300.577625
EM: Round [113] log likelihood: -72300.577520
EM: Round [114] log likelihood: -72300.577418
EM: Round [115] log likelihood: -72300.577319
EM: Stopping iterations at round 115 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 73993705 > /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir > /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir --annotate /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir
-done, see /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 396, filtered: 4714)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000287758.1]
WARNING, no entry stored in dbm for [ENSG00000260236.1]
WARNING, no entry stored in dbm for [ENSG00000258186.2]
WARNING, no entry stored in dbm for [ENSG00000250813.1]
WARNING, no entry stored in dbm for [ENSG00000223202.1]
WARNING, no entry stored in dbm for [ENSG00000200966.1]
WARNING, no entry stored in dbm for [ENSG00000251474.6]
WARNING, no entry stored in dbm for [ENSG00000249752.1]
WARNING, no entry stored in dbm for [ENSG00000229431.1]
WARNING, no entry stored in dbm for [ENSG00000282508.2]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000249375.8]
WARNING, no entry stored in dbm for [ENSG00000233937.7]
WARNING, no entry stored in dbm for [ENSG00000187172.15]
WARNING, no entry stored in dbm for [ENSG00000233937.7]
WARNING, no entry stored in dbm for [ENSG00000248103.1]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000286263.1]
WARNING, no entry stored in dbm for [ENSG00000276375.1]
WARNING, no entry stored in dbm for [ENSG00000203585.4]
WARNING, no entry stored in dbm for [ENSG00000279217.1]
WARNING, no entry stored in dbm for [ENSG00000215606.4]
WARNING, no entry stored in dbm for [ENSG00000229807.12]
WARNING, no entry stored in dbm for [ENSG00000241743.4]
WARNING, no entry stored in dbm for [ENSG00000262445.3]
WARNING, no entry stored in dbm for [ENSG00000224713.4]
WARNING, no entry stored in dbm for [ENSG00000236413.2]
WARNING, no entry stored in dbm for [ENSG00000259300.2]
WARNING, no entry stored in dbm for [ENSG00000225501.1]
WARNING, no entry stored in dbm for [ENSG00000271434.3]
WARNING, no entry stored in dbm for [ENSG00000269439.6]
WARNING, no entry stored in dbm for [ENSG00000234663.7]
WARNING, no entry stored in dbm for [ENSG00000181984.11]
WARNING, no entry stored in dbm for [ENSG00000286694.1]
WARNING, no entry stored in dbm for [ENSG00000224078.15]
WARNING, no entry stored in dbm for [ENSG00000276403.1]
WARNING, no entry stored in dbm for [ENSG00000287763.1]
WARNING, no entry stored in dbm for [ENSG00000225138.8]
WARNING, no entry stored in dbm for [ENSG00000271959.1]
WARNING, no entry stored in dbm for [ENSG00000215790.8]
WARNING, no entry stored in dbm for [ENSG00000215837.7]
WARNING, no entry stored in dbm for [ENSG00000215837.7]
WARNING, no entry stored in dbm for [ENSG00000243663.1]
WARNING, no entry stored in dbm for [ENSG00000249987.1]
WARNING, no entry stored in dbm for [ENSG00000239218.2]
WARNING, no entry stored in dbm for [ENSG00000219932.6]
WARNING, no entry stored in dbm for [ENSG00000270865.1]
WARNING, no entry stored in dbm for [ENSG00000226360.5]
WARNING, no entry stored in dbm for [ENSG00000213172.3]
WARNING, no entry stored in dbm for [ENSG00000242381.3]
WARNING, no entry stored in dbm for [ENSG00000278771.1]
WARNING, no entry stored in dbm for [ENSG00000244692.3]
WARNING, no entry stored in dbm for [ENSG00000278771.1]
WARNING, no entry stored in dbm for [ENSG00000243980.3]
WARNING, no entry stored in dbm for [ENSG00000264573.2]
WARNING, no entry stored in dbm for [ENSG00000265559.2]
WARNING, no entry stored in dbm for [ENSG00000278771.1]
WARNING, no entry stored in dbm for [ENSG00000242894.3]
WARNING, no entry stored in dbm for [ENSG00000265753.2]
WARNING, no entry stored in dbm for [ENSG00000264582.2]
WARNING, no entry stored in dbm for [ENSG00000263740.2]
WARNING, no entry stored in dbm for [ENSG00000264582.2]
WARNING, no entry stored in dbm for [ENSG00000240869.3]
WARNING, no entry stored in dbm for [ENSG00000239316.3]
WARNING, no entry stored in dbm for [ENSG00000244335.3]
WARNING, no entry stored in dbm for [ENSG00000202058.1]
WARNING, no entry stored in dbm for [ENSG00000201967.1]
WARNING, no entry stored in dbm for [ENSG00000202058.1]
WARNING, no entry stored in dbm for [ENSG00000223136.1]
WARNING, no entry stored in dbm for [ENSG00000202392.1]
WARNING, no entry stored in dbm for [ENSG00000202058.1]
WARNING, no entry stored in dbm for [ENSG00000201395.1]
WARNING, no entry stored in dbm for [ENSG00000222386.1]
WARNING, no entry stored in dbm for [ENSG00000201395.1]
WARNING, no entry stored in dbm for [ENSG00000201010.1]
WARNING, no entry stored in dbm for [ENSG00000222974.1]
WARNING, no entry stored in dbm for [ENSG00000222386.1]
WARNING, no entry stored in dbm for [ENSG00000222974.1]
WARNING, no entry stored in dbm for [ENSG00000201010.1]
WARNING, no entry stored in dbm for [ENSG00000222974.1]
WARNING, no entry stored in dbm for [ENSG00000201794.1]
WARNING, no entry stored in dbm for [ENSG00000200131.1]
WARNING, no entry stored in dbm for [ENSG00000248717.1]
WARNING, no entry stored in dbm for [ENSG00000258130.8]
WARNING, no entry stored in dbm for [ENSG00000229852.4]
WARNING, no entry stored in dbm for [ENSG00000237854.3]
WARNING, no entry stored in dbm for [ENSG00000273643.1]
WARNING, no entry stored in dbm for [ENSG00000238291.1]
WARNING, no entry stored in dbm for [ENSG00000197475.11]
WARNING, no entry stored in dbm for [ENSG00000282728.1]
WARNING, no entry stored in dbm for [ENSG00000257634.1]
WARNING, no entry stored in dbm for [ENSG00000189223.15]
WARNING, no entry stored in dbm for [ENSG00000219926.11]
WARNING, no entry stored in dbm for [ENSG00000225377.6]
WARNING, no entry stored in dbm for [ENSG00000270504.1]
WARNING, no entry stored in dbm for [ENSG00000248320.1]
WARNING, no entry stored in dbm for [ENSG00000267858.6]
WARNING, no entry stored in dbm for [ENSG00000248455.6]
WARNING, no entry stored in dbm for [ENSG00000238230.2]
WARNING, no entry stored in dbm for [ENSG00000277739.1]
WARNING, no entry stored in dbm for [ENSG00000283568.1]
WARNING, no entry stored in dbm for [ENSG00000251323.3]
WARNING, no entry stored in dbm for [ENSG00000254952.1]
WARNING, no entry stored in dbm for [ENSG00000226125.2]
WARNING, no entry stored in dbm for [ENSG00000235687.9]
WARNING, no entry stored in dbm for [ENSG00000235687.9]
WARNING, no entry stored in dbm for [ENSG00000281832.1]
WARNING, no entry stored in dbm for [ENSG00000281832.1]
WARNING, no entry stored in dbm for [ENSG00000281832.1]
WARNING, no entry stored in dbm for [ENSG00000260807.7]
WARNING, no entry stored in dbm for [ENSG00000206159.11]
WARNING, no entry stored in dbm for [ENSG00000251489.2]
WARNING, no entry stored in dbm for [ENSG00000286644.1]
WARNING, no entry stored in dbm for [ENSG00000246203.2]
WARNING, no entry stored in dbm for [ENSG00000227638.2]
WARNING, no entry stored in dbm for [ENSG00000225851.1]
WARNING, no entry stored in dbm for [ENSG00000189223.15]
WARNING, no entry stored in dbm for [ENSG00000265962.1]
WARNING, no entry stored in dbm for [ENSG00000280828.1]
WARNING, no entry stored in dbm for [ENSG00000230239.1]
WARNING, no entry stored in dbm for [ENSG00000279277.2]
WARNING, no entry stored in dbm for [ENSG00000272744.1]
WARNING, no entry stored in dbm for [ENSG00000249509.1]
WARNING, no entry stored in dbm for [ENSG00000250391.1]
WARNING, no entry stored in dbm for [ENSG00000279694.1]
WARNING, no entry stored in dbm for [ENSG00000225270.1]
WARNING, no entry stored in dbm for [ENSG00000288524.1]
WARNING, no entry stored in dbm for [ENSG00000261376.1]
WARNING, no entry stored in dbm for [ENSG00000256128.6]
WARNING, no entry stored in dbm for [ENSG00000253223.1]
WARNING, no entry stored in dbm for [ENSG00000266954.1]
WARNING, no entry stored in dbm for [ENSG00000241838.3]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000234424.2]
WARNING, no entry stored in dbm for [ENSG00000275297.1]
WARNING, no entry stored in dbm for [ENSG00000215022.7]
WARNING, no entry stored in dbm for [ENSG00000197099.8]
WARNING, no entry stored in dbm for [ENSG00000229425.3]
WARNING, no entry stored in dbm for [ENSG00000265018.6]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000241473.1]
WARNING, no entry stored in dbm for [ENSG00000183154.1]
WARNING, no entry stored in dbm for [ENSG00000277332.1]
WARNING, no entry stored in dbm for [ENSG00000251314.2]
WARNING, no entry stored in dbm for [ENSG00000264151.6]
WARNING, no entry stored in dbm for [ENSG00000261020.1]
WARNING, no entry stored in dbm for [ENSG00000241744.1]
WARNING, no entry stored in dbm for [ENSG00000232176.1]
WARNING, no entry stored in dbm for [ENSG00000259605.3]
WARNING, no entry stored in dbm for [ENSG00000254951.7]
WARNING, no entry stored in dbm for [ENSG00000185641.6]
WARNING, no entry stored in dbm for [ENSG00000257817.2]
WARNING, no entry stored in dbm for [ENSG00000287677.2]
WARNING, no entry stored in dbm for [ENSG00000240669.1]
WARNING, no entry stored in dbm for [ENSG00000280187.1]
WARNING, no entry stored in dbm for [ENSG00000267443.2]
WARNING, no entry stored in dbm for [ENSG00000269839.1]
WARNING, no entry stored in dbm for [ENSG00000214331.8]
WARNING, no entry stored in dbm for [ENSG00000224086.6]
WARNING, no entry stored in dbm for [ENSG00000249738.10]
WARNING, no entry stored in dbm for [ENSG00000249738.10]
WARNING, no entry stored in dbm for [ENSG00000279660.1]
WARNING, no entry stored in dbm for [ENSG00000260807.7]
WARNING, no entry stored in dbm for [ENSG00000280054.1]


	* STAR-Fusion complete.  See output: /tmp/nxf.UBtauA2IVL/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)