Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/5f347e842709d1c3db78bc86f71083/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/5f347e842709d1c3db78bc86f71083/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/a096db62109edfb8d9aede09e26b4c/BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1_1.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/f7c46891ee12480c88775c01ab5059/BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1.Chimeric.out.junction Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/a096db62109edfb8d9aede09e26b4c/BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1_2.fastp.fastq.gz ==> STAGING COMPLETE (6 inputs) -ctat genome lib [/tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.UBtauA2IVL/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary -sample contains 73993705 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir -J /tmp/nxf.UBtauA2IVL/BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1.Chimeric.out.junction -O /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.UBtauA2IVL/BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1.Chimeric.out.junction -building interval tree based on /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.10 min). -mapping reads to genes [10000], rate=33333.33/min [20000], rate=37500.00/min [30000], rate=39130.43/min [40000], rate=36923.08/min [50000], rate=37974.68/min [60000], rate=38297.87/min [70000], rate=39622.64/min [80000], rate=40336.13/min [90000], rate=41538.46/min [100000], rate=42857.14/min [110000], rate=44000.00/min [120000], rate=45569.62/min [130000], rate=47272.73/min [140000], rate=49122.81/min [150000], rate=50561.80/min [160000], rate=46153.85/min [170000], rate=42148.76/min [180000], rate=39272.73/min [190000], rate=38127.09/min [200000], rate=37151.70/min [210000], rate=36416.18/min [220000], rate=35772.36/min [230000], rate=35475.58/min [240000], rate=35380.84/min [250000], rate=35714.29/min [260000], rate=36027.71/min [270000], rate=36322.87/min [280000], rate=36923.08/min [290000], rate=37339.06/min [300000], rate=37735.85/min [310000], rate=37959.18/min [320000], rate=38247.01/min [330000], rate=38747.55/min [340000], rate=39080.46/min [350000], rate=39179.10/min [360000], rate=39488.12/min [370000], rate=39784.95/min [380000], rate=40070.30/min [390000], rate=40414.51/min [400000], rate=40816.33/min [410000], rate=41344.54/min [420000], rate=41930.12/min [430000], rate=42434.21/min [440000], rate=42857.14/min [450000], rate=43338.68/min [460000], rate=43809.52/min [470000], rate=44479.50/min [480000], rate=44720.50/min [490000], rate=44748.86/min [500000], rate=44910.18/min [510000], rate=45132.74/min [520000], rate=45348.84/min [530000], rate=45755.40/min [540000], rate=46088.19/min [550000], rate=46478.87/min [560000], rate=46861.92/min [570000], rate=47302.90/min [580000], rate=47736.63/min [590000], rate=48163.27/min [600000], rate=48846.68/min [610000], rate=49326.15/min [620000], rate=49732.62/min [630000], rate=49933.95/min [640000], rate=50065.19/min [650000], rate=50257.73/min [660000], rate=50639.39/min [670000], rate=50886.08/min [680000], rate=51000.00/min [690000], rate=51301.12/min [700000], rate=51344.74/min [710000], rate=51263.54/min [720000], rate=51489.87/min [730000], rate=51773.05/min [740000], rate=51869.16/min [750000], rate=51903.11/min [760000], rate=52054.79/min [770000], rate=52144.47/min [780000], rate=52643.42/min [790000], rate=53020.13/min [800000], rate=53215.08/min [810000], rate=53289.47/min [820000], rate=53536.45/min [830000], rate=53779.70/min [840000], rate=54077.25/min [850000], rate=54140.13/min [860000], rate=54373.02/min [870000], rate=54831.93/min [880000], rate=54942.77/min [890000], rate=54994.85/min [900000], rate=55271.24/min [910000], rate=55431.47/min [920000], rate=55477.39/min [930000], rate=55467.20/min [940000], rate=55511.81/min [950000], rate=55664.06/min [960000], rate=55976.68/min [970000], rate=56069.36/min [980000], rate=56160.46/min [990000], rate=56410.26/min [1000000], rate=56550.42/min [1010000], rate=56741.57/min [1020000], rate=56877.32/min [1030000], rate=57116.45/min [1040000], rate=57511.52/min [1050000], rate=57851.24/min [1060000], rate=57713.25/min [1070000], rate=57681.94/min [1080000], rate=57805.53/min [1090000], rate=57876.11/min [1100000], rate=57996.49/min [1110000], rate=58115.18/min [1120000], rate=58384.01/min [1130000], rate=58498.71/min [1140000], rate=58611.83/min [1150000], rate=57934.51/min [1160000], rate=57520.66/min [1170000], rate=57352.94/min [1180000], rate=57327.94/min [1190000], rate=57165.73/min [1200000], rate=56962.03/min [1210000], rate=56410.26/min [1220000], rate=56006.12/min [1230000], rate=55866.77/min [1240000], rate=55813.95/min [1250000], rate=55762.08/min [1260000], rate=55670.10/min [1270000], rate=55742.50/min [1280000], rate=55773.42/min [1290000], rate=55924.86/min [1300000], rate=56115.11/min [1310000], rate=56102.78/min [1320000], rate=56170.21/min -building interval tree based on /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.08 min). -mapping reads to genes [10000], rate=100000.00/min [20000], rate=109090.91/min [30000], rate=94736.84/min [40000], rate=88888.89/min [50000], rate=68181.82/min [60000], rate=56250.00/min [70000], rate=50602.41/min [80000], rate=47058.82/min [90000], rate=47368.42/min [100000], rate=46153.85/min [110000], rate=45517.24/min [120000], rate=45000.00/min [130000], rate=45614.04/min [140000], rate=46927.37/min [150000], rate=47368.42/min [160000], rate=48000.00/min [170000], rate=49275.36/min [180000], rate=49541.28/min [190000], rate=48717.95/min [200000], rate=47244.09/min [210000], rate=47368.42/min [220000], rate=47311.83/min [230000], rate=46308.72/min [240000], rate=45714.29/min [250000], rate=45317.22/min [260000], rate=44699.14/min [270000], rate=44875.35/min [280000], rate=45161.29/min [290000], rate=45430.81/min [300000], rate=45801.53/min [310000], rate=46153.85/min [320000], rate=46376.81/min [330000], rate=47030.88/min [340000], rate=47552.45/min [350000], rate=48275.86/min [360000], rate=48430.49/min [370000], rate=47435.90/min [380000], rate=46530.61/min [390000], rate=45972.50/min [400000], rate=45627.38/min [410000], rate=44727.27/min [420000], rate=44210.53/min [430000], rate=43728.81/min [440000], rate=43853.82/min [450000], rate=43760.13/min [460000], rate=44089.46/min [470000], rate=44131.46/min [480000], rate=44171.78/min [490000], rate=44343.89/min [500000], rate=44510.39/min [510000], rate=44736.84/min [520000], rate=45348.84/min [530000], rate=45689.66/min [540000], rate=46022.73/min [550000], rate=46413.50/min [560000], rate=46796.66/min [570000], rate=47237.57/min [580000], rate=47606.02/min [590000], rate=47074.47/min [600000], rate=46272.49/min [610000], rate=45692.88/min [620000], rate=45476.77/min [630000], rate=45707.38/min [640000], rate=45933.01/min [650000], rate=45990.57/min [660000], rate=45993.03/min [670000], rate=45838.08/min [680000], rate=45688.69/min [690000], rate=45695.36/min [700000], rate=45602.61/min [710000], rate=45610.28/min [720000], rate=45521.60/min [730000], rate=45720.25/min [740000], rate=45915.20/min [750000], rate=45965.27/min [760000], rate=46107.18/min [770000], rate=46292.59/min [780000], rate=46474.68/min [790000], rate=46745.56/min [800000], rate=47012.73/min [810000], rate=47368.42/min [820000], rate=47720.66/min [830000], rate=47838.62/min [840000], rate=47637.05/min [850000], rate=47752.81/min [860000], rate=47866.42/min [870000], rate=47540.98/min [880000], rate=47524.75/min [890000], rate=47508.90/min [900000], rate=47577.09/min [910000], rate=47643.98/min [920000], rate=47750.87/min [930000], rate=47979.36/min [940000], rate=48205.13/min [950000], rate=48551.96/min [960000], rate=48772.23/min [970000], rate=48825.50/min [980000], rate=48918.47/min [990000], rate=49090.91/min [1000000], rate=49180.33/min [1010000], rate=49348.53/min [1020000], rate=49554.66/min [1030000], rate=49718.42/min [1040000], rate=49840.26/min [1050000], rate=50039.71/min [1060000], rate=50236.97/min [1070000], rate=50432.05/min [1080000], rate=50585.48/min [1090000], rate=50855.37/min [1100000], rate=51242.24/min [1110000], rate=51428.57/min [1120000], rate=51692.31/min [1130000], rate=51954.02/min [1140000], rate=52173.91/min [1150000], rate=52233.16/min [1160000], rate=52330.83/min [1170000], rate=52388.06/min [1180000], rate=52561.25/min [1190000], rate=52616.06/min [1200000], rate=52708.64/min [1210000], rate=52876.91/min [1220000], rate=53081.94/min [1230000], rate=53285.20/min [1240000], rate=53486.70/min [1250000], rate=53763.44/min [1260000], rate=53961.46/min [1270000], rate=54196.30/min [1280000], rate=54506.74/min [1290000], rate=54815.86/min [1300000], rate=55045.87/min [1310000], rate=55313.16/min [1320000], rate=55539.97/min -building interval tree based on /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.10 min). -mapping reads to genes [10000], rate=40000.00/min [20000], rate=33333.33/min [30000], rate=33962.26/min [40000], rate=38709.68/min [50000], rate=40000.00/min [60000], rate=41379.31/min [70000], rate=42424.24/min [80000], rate=44036.70/min [90000], rate=45000.00/min [100000], rate=46153.85/min [110000], rate=47826.09/min [120000], rate=49655.17/min [130000], rate=51315.79/min [140000], rate=52830.19/min [150000], rate=53254.44/min [160000], rate=53631.28/min [170000], rate=54545.45/min [180000], rate=55670.10/min [190000], rate=56716.42/min [200000], rate=57692.31/min [210000], rate=56502.24/min [220000], rate=54545.45/min [230000], rate=53488.37/min [240000], rate=53136.53/min [250000], rate=52816.90/min [260000], rate=52525.25/min [270000], rate=52597.40/min [280000], rate=52996.85/min [290000], rate=53211.01/min [300000], rate=53412.46/min [310000], rate=53757.23/min [320000], rate=54390.93/min [330000], rate=55462.18/min [340000], rate=54838.71/min [350000], rate=53435.11/min [360000], rate=52811.74/min [370000], rate=51990.63/min [380000], rate=52900.23/min [390000], rate=53546.91/min [400000], rate=53215.08/min [410000], rate=53131.75/min [420000], rate=53052.63/min [430000], rate=53526.97/min [440000], rate=53549.70/min [450000], rate=53784.86/min [460000], rate=53906.25/min [470000], rate=54757.28/min [480000], rate=54961.83/min [490000], rate=55367.23/min [500000], rate=53859.96/min [510000], rate=52487.14/min [520000], rate=52613.83/min [530000], rate=51373.18/min [540000], rate=50625.00/min [550000], rate=50228.31/min [560000], rate=50149.25/min [570000], rate=50220.26/min [580000], rate=50071.94/min [590000], rate=49789.03/min [600000], rate=49723.76/min [610000], rate=49593.50/min [620000], rate=49402.39/min [630000], rate=49411.76/min [640000], rate=49484.54/min [650000], rate=49304.68/min [660000], rate=49070.63/min [670000], rate=48905.11/min [680000], rate=49097.47/min [690000], rate=49168.65/min [700000], rate=49008.17/min [710000], rate=48965.52/min [720000], rate=48979.59/min [730000], rate=48938.55/min [740000], rate=48898.68/min [750000], rate=48754.06/min [760000], rate=48927.04/min [770000], rate=48940.68/min [780000], rate=48851.77/min [790000], rate=48916.41/min [800000], rate=48979.59/min [810000], rate=49190.28/min [820000], rate=49447.24/min [830000], rate=49800.00/min [840000], rate=49753.21/min [850000], rate=49038.46/min [860000], rate=48587.57/min [870000], rate=48154.98/min [880000], rate=47739.60/min [890000], rate=47214.85/min [900000], rate=46834.35/min [910000], rate=46507.67/min [920000], rate=46582.28/min [930000], rate=46461.28/min [940000], rate=46534.65/min [950000], rate=46530.61/min [960000], rate=46564.27/min [970000], rate=46746.99/min [980000], rate=46927.37/min [990000], rate=47142.86/min [1000000], rate=47169.81/min [1010000], rate=47269.89/min [1020000], rate=47368.42/min [1030000], rate=47320.06/min [1040000], rate=47344.46/min [1050000], rate=47155.69/min [1060000], rate=47181.01/min [1070000], rate=47101.98/min [1080000], rate=47195.92/min [1090000], rate=47356.99/min [1100000], rate=47516.20/min [1110000], rate=47741.94/min [1120000], rate=47931.53/min [1130000], rate=48187.63/min [1140000], rate=48441.93/min [1150000], rate=48694.42/min [1160000], rate=48842.11/min [1170000], rate=49090.91/min [1180000], rate=49441.34/min [1190000], rate=49652.29/min [1200000], rate=49861.50/min [1210000], rate=50103.52/min [1220000], rate=50309.28/min [1230000], rate=50000.00/min [1240000], rate=49765.89/min [1250000], rate=49636.00/min [1260000], rate=49541.28/min [1270000], rate=49480.52/min [1280000], rate=49484.54/min [1290000], rate=49551.86/min [1300000], rate=49523.81/min [1310000], rate=49558.64/min -building interval tree based on /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.10 min). -mapping reads to genes [10000], rate=120000.00/min [20000], rate=100000.00/min [30000], rate=105882.35/min [40000], rate=120000.00/min [50000], rate=111111.11/min [60000], rate=105882.35/min [70000], rate=102439.02/min [80000], rate=104347.83/min [90000], rate=110204.08/min [100000], rate=109090.91/min [110000], rate=110000.00/min [120000], rate=114285.71/min [130000], rate=113043.48/min [140000], rate=110526.32/min [150000], rate=111111.11/min [160000], rate=112941.18/min [170000], rate=112087.91/min [180000], rate=109090.91/min [190000], rate=106542.06/min [200000], rate=106194.69/min [210000], rate=107692.31/min [220000], rate=106451.61/min [230000], rate=106153.85/min [240000], rate=108270.68/min [250000], rate=107142.86/min [260000], rate=105405.41/min [270000], rate=105194.81/min [280000], rate=107692.31/min [290000], rate=108750.00/min [300000], rate=107784.43/min [310000], rate=108139.53/min [320000], rate=107262.57/min [330000], rate=108791.21/min [340000], rate=109090.91/min [350000], rate=109375.00/min [360000], rate=109644.67/min [370000], rate=109359.61/min [380000], rate=108571.43/min [390000], rate=109345.79/min [400000], rate=110091.74/min [410000], rate=109821.43/min [420000], rate=109090.91/min [430000], rate=108403.36/min [440000], rate=108641.98/min [450000], rate=109756.10/min [460000], rate=109090.91/min [470000], rate=105617.98/min [480000], rate=91719.75/min [490000], rate=82352.94/min [500000], rate=74441.69/min [510000], rate=67849.22/min [520000], rate=62275.45/min [530000], rate=59217.88/min [540000], rate=55862.07/min [550000], rate=54098.36/min [560000], rate=51931.99/min [570000], rate=50220.26/min [580000], rate=48066.30/min [590000], rate=47137.15/min [600000], rate=46391.75/min [610000], rate=45807.26/min [620000], rate=45476.77/min [630000], rate=45053.64/min [640000], rate=44393.06/min [650000], rate=43968.43/min [660000], rate=43708.61/min [670000], rate=43648.21/min [680000], rate=42677.82/min [690000], rate=42548.82/min [700000], rate=42253.52/min [710000], rate=42261.90/min [720000], rate=41982.51/min [730000], rate=41793.89/min [740000], rate=41768.58/min [750000], rate=41821.56/min [760000], rate=41873.28/min [770000], rate=42076.50/min [780000], rate=42276.42/min [790000], rate=42511.21/min [800000], rate=42742.65/min [810000], rate=43008.85/min [820000], rate=43233.74/min [830000], rate=43342.04/min [840000], rate=43261.80/min [850000], rate=43110.74/min [860000], rate=43143.81/min [870000], rate=43211.92/min [880000], rate=43456.79/min [890000], rate=43663.12/min [900000], rate=43866.77/min [910000], rate=44103.39/min [920000], rate=44337.35/min [930000], rate=44604.32/min [940000], rate=44833.07/min [950000], rate=45094.94/min [960000], rate=45390.07/min [970000], rate=45718.77/min [980000], rate=46009.39/min [990000], rate=46297.74/min [1000000], rate=46511.63/min [1010000], rate=46189.02/min [1020000], rate=45945.95/min [1030000], rate=46085.01/min [1040000], rate=45949.93/min [1050000], rate=45884.92/min [1060000], rate=45821.33/min [1070000], rate=45791.73/min [1080000], rate=45859.87/min [1090000], rate=46056.34/min [1100000], rate=46089.39/min [1110000], rate=46185.85/min [1120000], rate=46280.99/min [1130000], rate=46374.83/min [1140000], rate=46435.85/min [1150000], rate=46527.31/min [1160000], rate=46648.79/min [1170000], rate=46768.82/min [1180000], rate=46980.76/min [1190000], rate=47191.01/min [1200000], rate=47430.83/min [1210000], rate=47637.80/min [1220000], rate=47843.14/min [1230000], rate=48109.52/min [1240000], rate=48343.08/min [1250000], rate=48512.29/min [1260000], rate=48461.54/min [1270000], rate=48380.95/min [1280000], rate=48362.72/min [1290000], rate=48435.54/min [1300000], rate=48567.87/min [1310000], rate=48698.88/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir --filt_file /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -parsing /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info. 6000000.00 reads per min processed... 6000000.00 reads per min processed... 9000000.00 reads per min processed... 8000000.00 reads per min processed... 7500000.00 reads per min processed... 7200000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 5500000.00 reads per min processed... 5538461.54 reads per min processed... 5571428.57 reads per min processed... 5600000.00 reads per min processed... 5294117.65 reads per min processed... 5333333.33 reads per min processed... 5100000.00 reads per min processed... 4909090.91 reads per min processed... 4956521.74 reads per min processed... 4800000.00 reads per min processed... 4846153.85 reads per min processed... 4714285.71 reads per min processed... 4758620.69 reads per min processed... 4800000.00 reads per min processed... 4838709.68 reads per min processed... 4727272.73 reads per min processed... 4764705.88 reads per min processed... 4800000.00 reads per min processed... 4833333.33 reads per min processed... 5000000.00 reads per min processed... 5027027.03 reads per min processed... 5052631.58 reads per min processed... 5076923.08 reads per min processed... 5100000.00 reads per min processed... 5121951.22 reads per min processed... 5142857.14 reads per min processed... 5045454.55 reads per min processed... 5066666.67 reads per min processed... 5086956.52 reads per min processed... 5106382.98 reads per min processed... 5125000.00 reads per min processed... 5040000.00 reads per min processed... 5058823.53 reads per min processed... 5076923.08 reads per min processed... 5094339.62 reads per min processed... done. * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion -parsing fusion evidence: /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -outputting fusion candidates to file: /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.UBtauA2IVL/BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion CMD: mkdir -p /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir EM: Starting log likelihood: -72550.998194 EM: Round [1] log likelihood: -72416.692722 EM: Round [2] log likelihood: -72362.834372 EM: Round [3] log likelihood: -72336.358065 EM: Round [4] log likelihood: -72322.141017 EM: Round [5] log likelihood: -72314.150348 EM: Round [6] log likelihood: -72309.507319 EM: Round [7] log likelihood: -72306.717746 EM: Round [8] log likelihood: -72304.977907 EM: Round [9] log likelihood: -72303.848318 EM: Round [10] log likelihood: -72303.084940 EM: Round [11] log likelihood: -72302.549346 EM: Round [12] log likelihood: -72302.160812 EM: Round [13] log likelihood: -72301.870734 EM: Round [14] log likelihood: -72301.648828 EM: Round [15] log likelihood: -72301.475571 EM: Round [16] log likelihood: -72301.337950 EM: Round [17] log likelihood: -72301.227034 EM: Round [18] log likelihood: -72301.136518 EM: Round [19] log likelihood: -72301.061847 EM: Round [20] log likelihood: -72300.999662 EM: Round [21] log likelihood: -72300.947440 EM: Round [22] log likelihood: -72300.903255 EM: Round [23] log likelihood: -72300.865619 EM: Round [24] log likelihood: -72300.833364 EM: Round [25] log likelihood: -72300.805568 EM: Round [26] log likelihood: -72300.781492 EM: Round [27] log likelihood: -72300.760541 EM: Round [28] log likelihood: -72300.742231 EM: Round [29] log likelihood: -72300.726164 EM: Round [30] log likelihood: -72300.712013 EM: Round [31] log likelihood: -72300.699507 EM: Round [32] log likelihood: -72300.688416 EM: Round [33] log likelihood: -72300.678552 EM: Round [34] log likelihood: -72300.669751 EM: Round [35] log likelihood: -72300.661878 EM: Round [36] log likelihood: -72300.654816 EM: Round [37] log likelihood: -72300.648464 EM: Round [38] log likelihood: -72300.642738 EM: Round [39] log likelihood: -72300.637562 EM: Round [40] log likelihood: -72300.632874 EM: Round [41] log likelihood: -72300.628617 EM: Round [42] log likelihood: -72300.624743 EM: Round [43] log likelihood: -72300.621210 EM: Round [44] log likelihood: -72300.617981 EM: Round [45] log likelihood: -72300.615023 EM: Round [46] log likelihood: -72300.612309 EM: Round [47] log likelihood: -72300.609812 EM: Round [48] log likelihood: -72300.607511 EM: Round [49] log likelihood: -72300.605387 EM: Round [50] log likelihood: -72300.603421 EM: Round [51] log likelihood: -72300.601599 EM: Round [52] log likelihood: -72300.599906 EM: Round [53] log likelihood: -72300.598331 EM: Round [54] log likelihood: -72300.596863 EM: Round [55] log likelihood: -72300.595493 EM: Round [56] log likelihood: -72300.594210 EM: Round [57] log likelihood: -72300.593008 EM: Round [58] log likelihood: -72300.591880 EM: Round [59] log likelihood: -72300.590819 EM: Round [60] log likelihood: -72300.589821 EM: Round [61] log likelihood: -72300.588879 EM: Round [62] log likelihood: -72300.587989 EM: Round [63] log likelihood: -72300.587148 EM: Round [64] log likelihood: -72300.586351 EM: Round [65] log likelihood: -72300.585595 EM: Round [66] log likelihood: -72300.584878 EM: Round [67] log likelihood: -72300.584195 EM: Round [68] log likelihood: -72300.583546 EM: Round [69] log likelihood: -72300.582928 EM: Round [70] log likelihood: -72300.582337 EM: Round [71] log likelihood: -72300.581774 EM: Round [72] log likelihood: -72300.581235 EM: Round [73] log likelihood: -72300.580720 EM: Round [74] log likelihood: -72300.580227 EM: Round [75] log likelihood: -72300.579754 EM: Round [76] log likelihood: -72300.579301 EM: Round [77] log likelihood: -72300.578866 EM: Round [78] log likelihood: -72300.578448 EM: Round [79] log likelihood: -72300.578046 EM: Round [80] log likelihood: -72300.577660 EM: Round [81] log likelihood: -72300.577288 EM: Round [82] log likelihood: -72300.576931 EM: Round [83] log likelihood: -72300.576586 EM: Round [84] log likelihood: -72300.576254 EM: Round [85] log likelihood: -72300.575933 EM: Round [86] log likelihood: -72300.575624 EM: Round [87] log likelihood: -72300.575325 EM: Round [88] log likelihood: -72300.575037 EM: Round [89] log likelihood: -72300.574758 EM: Round [90] log likelihood: -72300.574489 EM: Round [91] log likelihood: -72300.574229 EM: Round [92] log likelihood: -72300.573977 EM: Round [93] log likelihood: -72300.573734 EM: Round [94] log likelihood: -72300.573498 EM: Round [95] log likelihood: -72300.573269 EM: Round [96] log likelihood: -72300.573048 EM: Round [97] log likelihood: -72300.572834 EM: Round [98] log likelihood: -72300.572626 EM: Round [99] log likelihood: -72300.572425 EM: Round [100] log likelihood: -72300.572230 EM: Round [101] log likelihood: -72300.572041 EM: Round [102] log likelihood: -72300.571857 EM: Round [103] log likelihood: -72300.571679 EM: Round [104] log likelihood: -72300.571506 EM: Round [105] log likelihood: -72300.571338 EM: Round [106] log likelihood: -72300.571175 EM: Round [107] log likelihood: -72300.571017 EM: Round [108] log likelihood: -72300.570863 EM: Round [109] log likelihood: -72300.570714 EM: Round [110] log likelihood: -72300.570568 EM: Round [111] log likelihood: -72300.570427 EM: Round [112] log likelihood: -72300.570290 EM: Round [113] log likelihood: -72300.570156 EM: Round [114] log likelihood: -72300.570027 EM: Round [115] log likelihood: -72300.569900 EM: Round [116] log likelihood: -72300.569777 EM: Round [117] log likelihood: -72300.569658 EM: Round [118] log likelihood: -72300.569541 EM: Round [119] log likelihood: -72300.569428 EM: Round [120] log likelihood: -72300.569317 EM: Round [121] log likelihood: -72300.569210 EM: Round [122] log likelihood: -72300.569105 EM: Round [123] log likelihood: -72300.569003 EM: Round [124] log likelihood: -72300.568903 EM: Stopping iterations at round 124 due to insufficient improvement in likelihood. EM: Starting log likelihood: -72517.235367 EM: Round [1] log likelihood: -72399.544741 EM: Round [2] log likelihood: -72353.262999 EM: Round [3] log likelihood: -72330.655872 EM: Round [4] log likelihood: -72318.578444 EM: Round [5] log likelihood: -72311.838947 EM: Round [6] log likelihood: -72307.953286 EM: Round [7] log likelihood: -72305.633771 EM: Round [8] log likelihood: -72304.193802 EM: Round [9] log likelihood: -72303.261844 EM: Round [10] log likelihood: -72302.633344 EM: Round [11] log likelihood: -72302.192990 EM: Round [12] log likelihood: -72301.873850 EM: Round [13] log likelihood: -72301.635758 EM: Round [14] log likelihood: -72301.453747 EM: Round [15] log likelihood: -72301.311742 EM: Round [16] log likelihood: -72301.199043 EM: Round [17] log likelihood: -72301.108300 EM: Round [18] log likelihood: -72301.034330 EM: Round [19] log likelihood: -72300.973383 EM: Round [20] log likelihood: -72300.922695 EM: Round [21] log likelihood: -72300.880189 EM: Round [22] log likelihood: -72300.844278 EM: Round [23] log likelihood: -72300.813738 EM: Round [24] log likelihood: -72300.787607 EM: Round [25] log likelihood: -72300.765126 EM: Round [26] log likelihood: -72300.745687 EM: Round [27] log likelihood: -72300.728801 EM: Round [28] log likelihood: -72300.714069 EM: Round [29] log likelihood: -72300.701165 EM: Round [30] log likelihood: -72300.689819 EM: Round [31] log likelihood: -72300.679809 EM: Round [32] log likelihood: -72300.670948 EM: Round [33] log likelihood: -72300.663080 EM: Round [34] log likelihood: -72300.656072 EM: Round [35] log likelihood: -72300.649813 EM: Round [36] log likelihood: -72300.644207 EM: Round [37] log likelihood: -72300.639172 EM: Round [38] log likelihood: -72300.634640 EM: Round [39] log likelihood: -72300.630549 EM: Round [40] log likelihood: -72300.626847 EM: Round [41] log likelihood: -72300.623490 EM: Round [42] log likelihood: -72300.620438 EM: Round [43] log likelihood: -72300.617657 EM: Round [44] log likelihood: -72300.615118 EM: Round [45] log likelihood: -72300.612793 EM: Round [46] log likelihood: -72300.610661 EM: Round [47] log likelihood: -72300.608701 EM: Round [48] log likelihood: -72300.606896 EM: Round [49] log likelihood: -72300.605229 EM: Round [50] log likelihood: -72300.603687 EM: Round [51] log likelihood: -72300.602258 EM: Round [52] log likelihood: -72300.600931 EM: Round [53] log likelihood: -72300.599696 EM: Round [54] log likelihood: -72300.598544 EM: Round [55] log likelihood: -72300.597469 EM: Round [56] log likelihood: -72300.596462 EM: Round [57] log likelihood: -72300.595519 EM: Round [58] log likelihood: -72300.594633 EM: Round [59] log likelihood: -72300.593800 EM: Round [60] log likelihood: -72300.593015 EM: Round [61] log likelihood: -72300.592275 EM: Round [62] log likelihood: -72300.591575 EM: Round [63] log likelihood: -72300.590913 EM: Round [64] log likelihood: -72300.590286 EM: Round [65] log likelihood: -72300.589691 EM: Round [66] log likelihood: -72300.589125 EM: Round [67] log likelihood: -72300.588588 EM: Round [68] log likelihood: -72300.588076 EM: Round [69] log likelihood: -72300.587588 EM: Round [70] log likelihood: -72300.587122 EM: Round [71] log likelihood: -72300.586678 EM: Round [72] log likelihood: -72300.586253 EM: Round [73] log likelihood: -72300.585846 EM: Round [74] log likelihood: -72300.585457 EM: Round [75] log likelihood: -72300.585083 EM: Round [76] log likelihood: -72300.584725 EM: Round [77] log likelihood: -72300.584382 EM: Round [78] log likelihood: -72300.584052 EM: Round [79] log likelihood: -72300.583735 EM: Round [80] log likelihood: -72300.583430 EM: Round [81] log likelihood: -72300.583136 EM: Round [82] log likelihood: -72300.582854 EM: Round [83] log likelihood: -72300.582581 EM: Round [84] log likelihood: -72300.582319 EM: Round [85] log likelihood: -72300.582066 EM: Round [86] log likelihood: -72300.581822 EM: Round [87] log likelihood: -72300.581587 EM: Round [88] log likelihood: -72300.581359 EM: Round [89] log likelihood: -72300.581140 EM: Round [90] log likelihood: -72300.580927 EM: Round [91] log likelihood: -72300.580722 EM: Round [92] log likelihood: -72300.580524 EM: Round [93] log likelihood: -72300.580332 EM: Round [94] log likelihood: -72300.580146 EM: Round [95] log likelihood: -72300.579967 EM: Round [96] log likelihood: -72300.579793 EM: Round [97] log likelihood: -72300.579624 EM: Round [98] log likelihood: -72300.579461 EM: Round [99] log likelihood: -72300.579302 EM: Round [100] log likelihood: -72300.579149 EM: Round [101] log likelihood: -72300.579000 EM: Round [102] log likelihood: -72300.578856 EM: Round [103] log likelihood: -72300.578716 EM: Round [104] log likelihood: -72300.578580 EM: Round [105] log likelihood: -72300.578448 EM: Round [106] log likelihood: -72300.578320 EM: Round [107] log likelihood: -72300.578196 EM: Round [108] log likelihood: -72300.578075 EM: Round [109] log likelihood: -72300.577958 EM: Round [110] log likelihood: -72300.577844 EM: Round [111] log likelihood: -72300.577733 EM: Round [112] log likelihood: -72300.577625 EM: Round [113] log likelihood: -72300.577520 EM: Round [114] log likelihood: -72300.577418 EM: Round [115] log likelihood: -72300.577319 EM: Stopping iterations at round 115 due to insufficient improvement in likelihood. CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20 CMD: cp /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged CMD: ln -sf /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered * Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 73993705 > /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM * Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir > /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir --annotate /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot * Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir -done, see /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass * Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir -filter_likely_RT_artifacts: (pass: 396, filtered: 4714) * Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001 * Running CMD: cp /tmp/nxf.UBtauA2IVL/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv * Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.UBtauA2IVL/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv WARNING, no entry stored in dbm for [ENSG00000287758.1] WARNING, no entry stored in dbm for [ENSG00000260236.1] WARNING, no entry stored in dbm for [ENSG00000258186.2] WARNING, no entry stored in dbm for [ENSG00000250813.1] WARNING, no entry stored in dbm for [ENSG00000223202.1] WARNING, no entry stored in dbm for [ENSG00000200966.1] WARNING, no entry stored in dbm for [ENSG00000251474.6] WARNING, no entry stored in dbm for [ENSG00000249752.1] WARNING, no entry stored in dbm for [ENSG00000229431.1] WARNING, no entry stored in dbm for [ENSG00000282508.2] WARNING, no entry stored in dbm for [ENSG00000237296.9] WARNING, no entry stored in dbm for [ENSG00000249375.8] WARNING, no entry stored in dbm for [ENSG00000233937.7] WARNING, no entry stored in dbm for [ENSG00000187172.15] WARNING, no entry stored in dbm for [ENSG00000233937.7] WARNING, no entry stored in dbm for [ENSG00000248103.1] WARNING, no entry stored in dbm for [ENSG00000272140.2] WARNING, no entry stored in dbm for [ENSG00000286263.1] WARNING, no entry stored in dbm for [ENSG00000276375.1] WARNING, no entry stored in dbm for [ENSG00000203585.4] WARNING, no entry stored in dbm for [ENSG00000279217.1] WARNING, no entry stored in dbm for [ENSG00000215606.4] WARNING, no entry stored in dbm for [ENSG00000229807.12] WARNING, no entry stored in dbm for [ENSG00000241743.4] WARNING, no entry stored in dbm for [ENSG00000262445.3] WARNING, no entry stored in dbm for [ENSG00000224713.4] WARNING, no entry stored in dbm for [ENSG00000236413.2] WARNING, no entry stored in dbm for [ENSG00000259300.2] WARNING, no entry stored in dbm for [ENSG00000225501.1] WARNING, no entry stored in dbm for [ENSG00000271434.3] WARNING, no entry stored in dbm for [ENSG00000269439.6] WARNING, no entry stored in dbm for [ENSG00000234663.7] WARNING, no entry stored in dbm for [ENSG00000181984.11] WARNING, no entry stored in dbm for [ENSG00000286694.1] WARNING, no entry stored in dbm for [ENSG00000224078.15] WARNING, no entry stored in dbm for [ENSG00000276403.1] WARNING, no entry stored in dbm for [ENSG00000287763.1] WARNING, no entry stored in dbm for [ENSG00000225138.8] WARNING, no entry stored in dbm for [ENSG00000271959.1] WARNING, no entry stored in dbm for [ENSG00000215790.8] WARNING, no entry stored in dbm for [ENSG00000215837.7] WARNING, no entry stored in dbm for [ENSG00000215837.7] WARNING, no entry stored in dbm for [ENSG00000243663.1] WARNING, no entry stored in dbm for [ENSG00000249987.1] WARNING, no entry stored in dbm for [ENSG00000239218.2] WARNING, no entry stored in dbm for [ENSG00000219932.6] WARNING, no entry stored in dbm for [ENSG00000270865.1] WARNING, no entry stored in dbm for [ENSG00000226360.5] WARNING, no entry stored in dbm for [ENSG00000213172.3] WARNING, no entry stored in dbm for [ENSG00000242381.3] WARNING, no entry stored in dbm for [ENSG00000278771.1] WARNING, no entry stored in dbm for [ENSG00000244692.3] WARNING, no entry stored in dbm for [ENSG00000278771.1] WARNING, no entry stored in dbm for [ENSG00000243980.3] WARNING, no entry stored in dbm for [ENSG00000264573.2] WARNING, no entry stored in dbm for [ENSG00000265559.2] WARNING, no entry stored in dbm for [ENSG00000278771.1] WARNING, no entry stored in dbm for [ENSG00000242894.3] WARNING, no entry stored in dbm for [ENSG00000265753.2] WARNING, no entry stored in dbm for [ENSG00000264582.2] WARNING, no entry stored in dbm for [ENSG00000263740.2] WARNING, no entry stored in dbm for [ENSG00000264582.2] WARNING, no entry stored in dbm for [ENSG00000240869.3] WARNING, no entry stored in dbm for [ENSG00000239316.3] WARNING, no entry stored in dbm for [ENSG00000244335.3] WARNING, no entry stored in dbm for [ENSG00000202058.1] WARNING, no entry stored in dbm for [ENSG00000201967.1] WARNING, no entry stored in dbm for [ENSG00000202058.1] WARNING, no entry stored in dbm for [ENSG00000223136.1] WARNING, no entry stored in dbm for [ENSG00000202392.1] WARNING, no entry stored in dbm for [ENSG00000202058.1] WARNING, no entry stored in dbm for [ENSG00000201395.1] WARNING, no entry stored in dbm for [ENSG00000222386.1] WARNING, no entry stored in dbm for [ENSG00000201395.1] WARNING, no entry stored in dbm for [ENSG00000201010.1] WARNING, no entry stored in dbm for [ENSG00000222974.1] WARNING, no entry stored in dbm for [ENSG00000222386.1] WARNING, no entry stored in dbm for [ENSG00000222974.1] WARNING, no entry stored in dbm for [ENSG00000201010.1] WARNING, no entry stored in dbm for [ENSG00000222974.1] WARNING, no entry stored in dbm for [ENSG00000201794.1] WARNING, no entry stored in dbm for [ENSG00000200131.1] WARNING, no entry stored in dbm for [ENSG00000248717.1] WARNING, no entry stored in dbm for [ENSG00000258130.8] WARNING, no entry stored in dbm for [ENSG00000229852.4] WARNING, no entry stored in dbm for [ENSG00000237854.3] WARNING, no entry stored in dbm for [ENSG00000273643.1] WARNING, no entry stored in dbm for [ENSG00000238291.1] WARNING, no entry stored in dbm for [ENSG00000197475.11] WARNING, no entry stored in dbm for [ENSG00000282728.1] WARNING, no entry stored in dbm for [ENSG00000257634.1] WARNING, no entry stored in dbm for [ENSG00000189223.15] WARNING, no entry stored in dbm for [ENSG00000219926.11] WARNING, no entry stored in dbm for [ENSG00000225377.6] WARNING, no entry stored in dbm for [ENSG00000270504.1] WARNING, no entry stored in dbm for [ENSG00000248320.1] WARNING, no entry stored in dbm for [ENSG00000267858.6] WARNING, no entry stored in dbm for [ENSG00000248455.6] WARNING, no entry stored in dbm for [ENSG00000238230.2] WARNING, no entry stored in dbm for [ENSG00000277739.1] WARNING, no entry stored in dbm for [ENSG00000283568.1] WARNING, no entry stored in dbm for [ENSG00000251323.3] WARNING, no entry stored in dbm for [ENSG00000254952.1] WARNING, no entry stored in dbm for [ENSG00000226125.2] WARNING, no entry stored in dbm for [ENSG00000235687.9] WARNING, no entry stored in dbm for [ENSG00000235687.9] WARNING, no entry stored in dbm for [ENSG00000281832.1] WARNING, no entry stored in dbm for [ENSG00000281832.1] WARNING, no entry stored in dbm for [ENSG00000281832.1] WARNING, no entry stored in dbm for [ENSG00000260807.7] WARNING, no entry stored in dbm for [ENSG00000206159.11] WARNING, no entry stored in dbm for [ENSG00000251489.2] WARNING, no entry stored in dbm for [ENSG00000286644.1] WARNING, no entry stored in dbm for [ENSG00000246203.2] WARNING, no entry stored in dbm for [ENSG00000227638.2] WARNING, no entry stored in dbm for [ENSG00000225851.1] WARNING, no entry stored in dbm for [ENSG00000189223.15] WARNING, no entry stored in dbm for [ENSG00000265962.1] WARNING, no entry stored in dbm for [ENSG00000280828.1] WARNING, no entry stored in dbm for [ENSG00000230239.1] WARNING, no entry stored in dbm for [ENSG00000279277.2] WARNING, no entry stored in dbm for [ENSG00000272744.1] WARNING, no entry stored in dbm for [ENSG00000249509.1] WARNING, no entry stored in dbm for [ENSG00000250391.1] WARNING, no entry stored in dbm for [ENSG00000279694.1] WARNING, no entry stored in dbm for [ENSG00000225270.1] WARNING, no entry stored in dbm for [ENSG00000288524.1] WARNING, no entry stored in dbm for [ENSG00000261376.1] WARNING, no entry stored in dbm for [ENSG00000256128.6] WARNING, no entry stored in dbm for [ENSG00000253223.1] WARNING, no entry stored in dbm for [ENSG00000266954.1] WARNING, no entry stored in dbm for [ENSG00000241838.3] WARNING, no entry stored in dbm for [ENSG00000215302.8] WARNING, no entry stored in dbm for [ENSG00000234424.2] WARNING, no entry stored in dbm for [ENSG00000275297.1] WARNING, no entry stored in dbm for [ENSG00000215022.7] WARNING, no entry stored in dbm for [ENSG00000197099.8] WARNING, no entry stored in dbm for [ENSG00000229425.3] WARNING, no entry stored in dbm for [ENSG00000265018.6] WARNING, no entry stored in dbm for [ENSG00000230869.1] WARNING, no entry stored in dbm for [ENSG00000272140.2] WARNING, no entry stored in dbm for [ENSG00000241473.1] WARNING, no entry stored in dbm for [ENSG00000183154.1] WARNING, no entry stored in dbm for [ENSG00000277332.1] WARNING, no entry stored in dbm for [ENSG00000251314.2] WARNING, no entry stored in dbm for [ENSG00000264151.6] WARNING, no entry stored in dbm for [ENSG00000261020.1] WARNING, no entry stored in dbm for [ENSG00000241744.1] WARNING, no entry stored in dbm for [ENSG00000232176.1] WARNING, no entry stored in dbm for [ENSG00000259605.3] WARNING, no entry stored in dbm for [ENSG00000254951.7] WARNING, no entry stored in dbm for [ENSG00000185641.6] WARNING, no entry stored in dbm for [ENSG00000257817.2] WARNING, no entry stored in dbm for [ENSG00000287677.2] WARNING, no entry stored in dbm for [ENSG00000240669.1] WARNING, no entry stored in dbm for [ENSG00000280187.1] WARNING, no entry stored in dbm for [ENSG00000267443.2] WARNING, no entry stored in dbm for [ENSG00000269839.1] WARNING, no entry stored in dbm for [ENSG00000214331.8] WARNING, no entry stored in dbm for [ENSG00000224086.6] WARNING, no entry stored in dbm for [ENSG00000249738.10] WARNING, no entry stored in dbm for [ENSG00000249738.10] WARNING, no entry stored in dbm for [ENSG00000279660.1] WARNING, no entry stored in dbm for [ENSG00000260807.7] WARNING, no entry stored in dbm for [ENSG00000280054.1] * STAR-Fusion complete. See output: /tmp/nxf.UBtauA2IVL/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)