Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/0c4a960ea95b59831c3bd63e485c39/MCF7_FFPE_RNA_0001_B23LG7FLT4_3.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/06e3601bc29dfda5a8b249216d1fbe/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/06e3601bc29dfda5a8b249216d1fbe/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory