Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/ec50cee158dacc035697f260e3d1cd/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/356aba0b44941bdb1ff909497fd1b2/A673_FFPE_RNA_0001_B23LG7FLT4_2/A673_FFPE_RNA_0001_B23LG7FLT4_2_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/ec50cee158dacc035697f260e3d1cd/.command.run
==> STAGING COMPLETE (3 inputs)

Processing SeqTools file: A673_FFPE_RNA_0001_B23LG7FLT4_2_full_basic_stats.tsv
Warning: scipy not available. GC bias calculation will be simplified.
Successfully converted A673_FFPE_RNA_0001_B23LG7FLT4_2_full_basic_stats.tsv to A673_FFPE_RNA_0001_B23LG7FLT4_2_seqtool_mqc.tsv
  Samples: 1
  SeqTools (general stats) columns: 18
  Metrics: reads, frac_unmapped, frac_dupes, unique_reads, frac_reads_on_target, frac_pairs_on_target, frac_reads_off_target, frac_pairs_off_target, reads_on_target, pairs_on_target, reads_off_target, pairs_off_target, mean_depth, q50_depth, frac_bases_gt30x, frac_bases_gt100x, n_q30, gc_bias