-ctat genome lib [/tmp/nxf.USOOXBODo0/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.USOOXBODo0/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.USOOXBODo0/./star-fusion.preliminary -sample contains 97538734 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.USOOXBODo0/ctat_genome_lib_build_dir -J /tmp/nxf.USOOXBODo0/HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1.Chimeric.out.junction -O /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.USOOXBODo0/HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1.Chimeric.out.junction -building interval tree based on /tmp/nxf.USOOXBODo0/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=28571.43/min [20000], rate=29268.29/min [30000], rate=29508.20/min [40000], rate=28571.43/min [50000], rate=30303.03/min [60000], rate=31304.35/min [70000], rate=32558.14/min [80000], rate=32876.71/min [90000], rate=34177.22/min [100000], rate=35087.72/min [110000], rate=35675.68/min [120000], rate=36180.90/min [130000], rate=37320.57/min [140000], rate=38709.68/min [150000], rate=40178.57/min [160000], rate=37944.66/min [170000], rate=36042.40/min [180000], rate=34504.79/min [190000], rate=33431.09/min [200000], rate=32608.70/min [210000], rate=31898.73/min [220000], rate=31730.77/min [230000], rate=31506.85/min [240000], rate=31648.35/min [250000], rate=31847.13/min [260000], rate=32231.40/min [270000], rate=32793.52/min [280000], rate=33201.58/min [290000], rate=33526.01/min [300000], rate=33962.26/min [310000], rate=34191.18/min [320000], rate=34408.60/min [330000], rate=34676.01/min [340000], rate=35233.16/min [350000], rate=35413.15/min [360000], rate=36060.10/min [370000], rate=36215.33/min [380000], rate=36421.73/min [390000], rate=36677.12/min [400000], rate=36979.97/min [410000], rate=37329.29/min [420000], rate=37724.55/min [430000], rate=38109.31/min [440000], rate=38540.15/min [450000], rate=39244.19/min [460000], rate=39884.39/min [470000], rate=40401.15/min [480000], rate=40851.06/min [490000], rate=41350.21/min [500000], rate=41841.00/min [510000], rate=42441.05/min [520000], rate=42975.21/min [530000], rate=43089.43/min [540000], rate=43257.68/min [550000], rate=43363.99/min [560000], rate=43354.84/min [570000], rate=43291.14/min [580000], rate=43500.00/min [590000], rate=43488.94/min [600000], rate=43373.49/min [610000], rate=43109.54/min [620000], rate=43055.56/min [630000], rate=43101.48/min [640000], rate=42953.02/min [650000], rate=42857.14/min [660000], rate=42996.74/min [670000], rate=43272.34/min [680000], rate=43496.80/min [690000], rate=43855.93/min [700000], rate=44164.04/min [710000], rate=44514.11/min [720000], rate=44720.50/min [730000], rate=44923.08/min [740000], rate=45213.85/min [750000], rate=45685.28/min [760000], rate=46060.61/min [770000], rate=46385.54/min [780000], rate=46474.68/min [790000], rate=46884.27/min [800000], rate=47151.28/min [810000], rate=47414.63/min [820000], rate=47628.27/min [830000], rate=47976.88/min [840000], rate=48275.86/min [850000], rate=48341.23/min [860000], rate=48587.57/min [870000], rate=49060.15/min [880000], rate=49577.46/min [890000], rate=50093.81/min [900000], rate=50609.18/min [910000], rate=51123.60/min [920000], rate=51637.04/min [930000], rate=51955.31/min [940000], rate=52077.56/min [950000], rate=52007.30/min [960000], rate=52173.91/min [970000], rate=52385.24/min [980000], rate=52546.92/min [990000], rate=52612.93/min [1000000], rate=52956.75/min [1010000], rate=53157.89/min [1020000], rate=53356.58/min [1030000], rate=53367.88/min [1040000], rate=53516.30/min [1050000], rate=53938.36/min [1060000], rate=54219.95/min [1070000], rate=54452.93/min [1080000], rate=54408.06/min [1090000], rate=54682.27/min [1100000], rate=54681.03/min [1110000], rate=54859.97/min [1120000], rate=55036.86/min [1130000], rate=55256.72/min [1140000], rate=55295.07/min [1150000], rate=55377.21/min [1160000], rate=55680.00/min [1170000], rate=56070.29/min [1180000], rate=56504.39/min [1190000], rate=56666.67/min [1200000], rate=56737.59/min [1210000], rate=56718.75/min [1220000], rate=56656.35/min [1230000], rate=56812.93/min [1240000], rate=56924.25/min [1250000], rate=56904.40/min [1260000], rate=56970.61/min [1270000], rate=57035.93/min [1280000], rate=57100.37/min [1290000], rate=57121.77/min [1300000], rate=57226.71/min [1310000], rate=57624.63/min [1320000], rate=58021.98/min [1330000], rate=58205.69/min [1340000], rate=58430.23/min [1350000], rate=58526.01/min [1360000], rate=58494.62/min [1370000], rate=58672.38/min [1380000], rate=59016.39/min [1390000], rate=59401.71/min [1400000], rate=59786.48/min [1410000], rate=60170.70/min [1420000], rate=60554.37/min [1430000], rate=60937.50/min [1440000], rate=61146.50/min [1450000], rate=61267.61/min [1460000], rate=61387.53/min [1470000], rate=61463.41/min [1480000], rate=61581.14/min [1490000], rate=61740.33/min [1500000], rate=61643.84/min [1510000], rate=61590.75/min [1520000], rate=61580.01/min [1530000], rate=61569.42/min [1540000], rate=61517.98/min [1550000], rate=61589.40/min [1560000], rate=61538.46/min [1570000], rate=61528.41/min [1580000], rate=61678.59/min [1590000], rate=61747.57/min [1600000], rate=61107.57/min [1610000], rate=60412.76/min [1620000], rate=60000.00/min [1630000], rate=59670.53/min [1640000], rate=59348.61/min [1650000], rate=59069.21/min [1660000], rate=58691.81/min [1670000], rate=58391.61/min [1680000], rate=57897.76/min [1690000], rate=57580.92/min [1700000], rate=57400.11/min [1710000], rate=57446.81/min [1720000], rate=57333.33/min [1730000], rate=57253.17/min [1740000], rate=57205.48/min [1750000], rate=57127.31/min [1760000], rate=56957.93/min [1770000], rate=57096.77/min [1780000], rate=56990.39/min [1790000], rate=56915.74/min [1800000], rate=56932.00/min [1810000], rate=56948.09/min [1820000], rate=57023.50/min [1830000], rate=57068.61/min [1840000], rate=57172.45/min [1850000], rate=57334.71/min [1860000], rate=57201.44/min [1870000], rate=57041.18/min [1880000], rate=56740.44/min [1890000], rate=56615.08/min -building interval tree based on /tmp/nxf.USOOXBODo0/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=35294.12/min [20000], rate=50000.00/min [30000], rate=48648.65/min [40000], rate=37500.00/min [50000], rate=35294.12/min [60000], rate=35294.12/min [70000], rate=33333.33/min [80000], rate=31578.95/min [90000], rate=31764.71/min [100000], rate=32258.06/min [110000], rate=31279.62/min [120000], rate=33027.52/min [130000], rate=33191.49/min [140000], rate=33201.58/min [150000], rate=33582.09/min [160000], rate=33449.48/min [170000], rate=33442.62/min [180000], rate=33333.33/min [190000], rate=33928.57/min [200000], rate=34883.72/min [210000], rate=35097.49/min [220000], rate=35675.68/min [230000], rate=36220.47/min [240000], rate=36828.64/min [250000], rate=37220.84/min [260000], rate=37772.40/min [270000], rate=38207.55/min [280000], rate=38532.11/min [290000], rate=38580.93/min [300000], rate=38626.61/min [310000], rate=38912.13/min [320000], rate=39024.39/min [330000], rate=38976.38/min [340000], rate=39230.77/min [350000], rate=39473.68/min [360000], rate=39779.01/min [370000], rate=40072.20/min [380000], rate=40282.69/min [390000], rate=40137.22/min [400000], rate=40677.97/min [410000], rate=41000.00/min [420000], rate=41447.37/min [430000], rate=41680.13/min [440000], rate=42307.69/min [450000], rate=42319.75/min [460000], rate=42266.46/min [470000], rate=42342.34/min [480000], rate=42603.55/min [490000], rate=42794.76/min [500000], rate=43103.45/min [510000], rate=43465.91/min [520000], rate=43820.22/min [530000], rate=44289.69/min [540000], rate=44813.28/min [550000], rate=44776.12/min [560000], rate=44621.51/min [570000], rate=44357.98/min [580000], rate=44106.46/min [590000], rate=44029.85/min [600000], rate=43742.41/min [610000], rate=43571.43/min [620000], rate=43457.94/min [630000], rate=43498.27/min [640000], rate=43586.83/min [650000], rate=43526.79/min [660000], rate=43564.36/min [670000], rate=43695.65/min [680000], rate=43776.82/min [690000], rate=43995.75/min [700000], rate=44025.16/min [710000], rate=44282.74/min [720000], rate=44490.22/min [730000], rate=44785.28/min [740000], rate=45167.85/min [750000], rate=45685.28/min [760000], rate=45783.13/min [770000], rate=45652.17/min [780000], rate=45261.12/min [790000], rate=45099.90/min [800000], rate=44985.94/min [810000], rate=44833.95/min [820000], rate=44646.10/min [830000], rate=44385.03/min [840000], rate=44366.20/min [850000], rate=44386.42/min [860000], rate=44444.44/min [870000], rate=44577.28/min [880000], rate=44594.59/min [890000], rate=44574.29/min [900000], rate=44701.99/min [910000], rate=44717.44/min [920000], rate=44841.59/min [930000], rate=44963.74/min [940000], rate=45374.09/min [950000], rate=45600.00/min [960000], rate=45714.29/min [970000], rate=45899.05/min [980000], rate=46190.10/min [990000], rate=46370.02/min [1000000], rate=46620.05/min [1010000], rate=46615.38/min [1020000], rate=46293.49/min [1030000], rate=46050.67/min [1040000], rate=45949.93/min [1050000], rate=45851.53/min [1060000], rate=45788.34/min [1070000], rate=45661.45/min [1080000], rate=45859.87/min [1090000], rate=45926.97/min [1100000], rate=45929.02/min [1110000], rate=45804.68/min [1120000], rate=45714.29/min [1130000], rate=45687.33/min [1140000], rate=45691.38/min [1150000], rate=45604.76/min [1160000], rate=45283.02/min [1170000], rate=45436.89/min [1180000], rate=45530.55/min [1190000], rate=45652.17/min [1200000], rate=45772.41/min [1210000], rate=45862.29/min [1220000], rate=46008.80/min [1230000], rate=46153.85/min [1240000], rate=46326.28/min [1250000], rate=46526.05/min [1260000], rate=46695.49/min [1270000], rate=46691.18/min [1280000], rate=46630.24/min [1290000], rate=46654.61/min [1300000], rate=46511.63/min [1310000], rate=46508.88/min [1320000], rate=46560.85/min [1330000], rate=46639.39/min [1340000], rate=46717.02/min [1350000], rate=46793.76/min [1360000], rate=46735.40/min [1370000], rate=46864.31/min [1380000], rate=46965.40/min [1390000], rate=47092.04/min [1400000], rate=47244.09/min [1410000], rate=47448.12/min [1420000], rate=47704.37/min [1430000], rate=47959.75/min [1440000], rate=48160.54/min [1450000], rate=48306.50/min [1460000], rate=48397.79/min [1470000], rate=48223.07/min [1480000], rate=48208.47/min [1490000], rate=48298.22/min [1500000], rate=48179.87/min [1510000], rate=48217.14/min [1520000], rate=48253.97/min [1530000], rate=48264.98/min [1540000], rate=48225.47/min [1550000], rate=48286.60/min [1560000], rate=48422.14/min [1570000], rate=48431.88/min [1580000], rate=48515.86/min [1590000], rate=48574.34/min [1600000], rate=48854.96/min [1610000], rate=49135.30/min [1620000], rate=49415.35/min [1630000], rate=49644.67/min [1640000], rate=49747.22/min [1650000], rate=49874.06/min [1660000], rate=50000.00/min [1670000], rate=50200.40/min [1680000], rate=50249.25/min [1690000], rate=50222.88/min [1700000], rate=50246.31/min [1710000], rate=50269.48/min [1720000], rate=50243.43/min [1730000], rate=50169.16/min [1740000], rate=50216.45/min [1750000], rate=50287.36/min [1760000], rate=50333.65/min [1770000], rate=50403.42/min [1780000], rate=50496.45/min [1790000], rate=50684.29/min [1800000], rate=50799.62/min [1810000], rate=50938.09/min [1820000], rate=51123.60/min [1830000], rate=51356.41/min [1840000], rate=51564.69/min [1850000], rate=51700.05/min [1860000], rate=51834.65/min [1870000], rate=52040.82/min [1880000], rate=52173.91/min -building interval tree based on /tmp/nxf.USOOXBODo0/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=120000.00/min [20000], rate=92307.69/min [30000], rate=100000.00/min [40000], rate=114285.71/min [50000], rate=111111.11/min [60000], rate=100000.00/min [70000], rate=100000.00/min [80000], rate=100000.00/min [90000], rate=100000.00/min [100000], rate=96774.19/min [110000], rate=98507.46/min [120000], rate=107462.69/min [130000], rate=116417.91/min [140000], rate=116666.67/min [150000], rate=116883.12/min [160000], rate=117073.17/min [170000], rate=113333.33/min [180000], rate=113684.21/min [190000], rate=117525.77/min [200000], rate=122448.98/min [210000], rate=124752.48/min [220000], rate=122222.22/min [230000], rate=120000.00/min [240000], rate=119008.26/min [250000], rate=120967.74/min [260000], rate=120930.23/min [270000], rate=119117.65/min [280000], rate=118309.86/min [290000], rate=118367.35/min [300000], rate=117647.06/min [310000], rate=116250.00/min [320000], rate=116363.64/min [330000], rate=120000.00/min [340000], rate=122891.57/min [350000], rate=123529.41/min [360000], rate=124855.49/min [370000], rate=124022.35/min [380000], rate=121925.13/min [390000], rate=122513.09/min [400000], rate=124352.33/min [410000], rate=127461.14/min [420000], rate=127272.73/min [430000], rate=126470.59/min [440000], rate=124528.30/min [450000], rate=124423.96/min [460000], rate=124886.88/min [470000], rate=124778.76/min [480000], rate=124137.93/min [490000], rate=124050.63/min [500000], rate=125000.00/min [510000], rate=125409.84/min [520000], rate=125301.20/min [530000], rate=124218.75/min [540000], rate=123193.92/min [550000], rate=125475.29/min [560000], rate=127756.65/min [570000], rate=127611.94/min [580000], rate=127941.18/min [590000], rate=126881.72/min [600000], rate=126315.79/min [610000], rate=126206.90/min [620000], rate=126530.61/min [630000], rate=126845.64/min [640000], rate=125901.64/min [650000], rate=125000.00/min [660000], rate=124921.14/min [670000], rate=125233.64/min [680000], rate=125538.46/min [690000], rate=124698.80/min [700000], rate=125000.00/min [710000], rate=125663.72/min [720000], rate=125217.39/min [730000], rate=124786.32/min [740000], rate=124022.35/min [750000], rate=125698.32/min [760000], rate=127019.50/min [770000], rate=127272.73/min [780000], rate=127173.91/min [790000], rate=126737.97/min [800000], rate=125654.45/min [810000], rate=125581.40/min [820000], rate=125190.84/min [830000], rate=113181.82/min [840000], rate=104781.70/min [850000], rate=95327.10/min [860000], rate=88054.61/min [870000], rate=82857.14/min [880000], rate=78688.52/min [890000], rate=74476.99/min [900000], rate=71618.04/min [910000], rate=69377.38/min [920000], rate=66747.28/min [930000], rate=64883.72/min [940000], rate=62876.25/min [950000], rate=61290.32/min [960000], rate=60000.00/min [970000], rate=59086.29/min [980000], rate=58333.33/min [990000], rate=57669.90/min [1000000], rate=57306.59/min [1010000], rate=56848.03/min [1020000], rate=56301.75/min [1030000], rate=55326.77/min [1040000], rate=54833.04/min [1050000], rate=54310.34/min [1060000], rate=54127.66/min [1070000], rate=53723.85/min [1080000], rate=52984.46/min [1090000], rate=52572.35/min [1100000], rate=52132.70/min [1110000], rate=51869.16/min [1120000], rate=51612.90/min [1130000], rate=51402.58/min [1140000], rate=51235.96/min [1150000], rate=50960.12/min [1160000], rate=50728.86/min [1170000], rate=50503.60/min [1180000], rate=50427.35/min [1190000], rate=50495.05/min [1200000], rate=50490.88/min [1210000], rate=50521.92/min [1220000], rate=50447.97/min [1230000], rate=50444.29/min [1240000], rate=50612.24/min [1250000], rate=50744.25/min [1260000], rate=50840.62/min [1270000], rate=51004.02/min [1280000], rate=51200.00/min [1290000], rate=51190.48/min [1300000], rate=51114.02/min [1310000], rate=51005.84/min [1320000], rate=50965.25/min [1330000], rate=50925.34/min [1340000], rate=50918.30/min [1350000], rate=50943.40/min [1360000], rate=50904.55/min [1370000], rate=50960.94/min [1380000], rate=50985.22/min [1390000], rate=50978.00/min [1400000], rate=51125.99/min [1410000], rate=51148.73/min [1420000], rate=51387.21/min [1430000], rate=51531.53/min [1440000], rate=51674.64/min [1450000], rate=51816.56/min [1460000], rate=52019.00/min [1470000], rate=52066.12/min [1480000], rate=51627.91/min [1490000], rate=51232.09/min [1500000], rate=51165.43/min [1510000], rate=51071.03/min [1520000], rate=50978.20/min [1530000], rate=50971.68/min [1540000], rate=50769.23/min [1550000], rate=50626.02/min [1560000], rate=50539.96/min [1570000], rate=50401.28/min [1580000], rate=50345.19/min [1590000], rate=50316.46/min [1600000], rate=50104.38/min [1610000], rate=50025.89/min [1620000], rate=49897.33/min [1630000], rate=49847.09/min [1640000], rate=49722.08/min [1650000], rate=49574.36/min [1660000], rate=49429.28/min [1670000], rate=49359.61/min [1680000], rate=49266.86/min [1690000], rate=49247.21/min [1700000], rate=49204.05/min [1710000], rate=49043.98/min [1720000], rate=48933.14/min [1730000], rate=48847.06/min [1740000], rate=48762.26/min [1750000], rate=48701.30/min [1760000], rate=48440.37/min [1770000], rate=48448.91/min [1780000], rate=48435.37/min [1790000], rate=48291.37/min [1800000], rate=48171.28/min [1810000], rate=48095.66/min [1820000], rate=47978.91/min [1830000], rate=48052.52/min [1840000], rate=48125.54/min [1850000], rate=47968.89/min [1860000], rate=47917.56/min [1870000], rate=47887.32/min [1880000], rate=47816.87/min -building interval tree based on /tmp/nxf.USOOXBODo0/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=33333.33/min [20000], rate=30769.23/min [30000], rate=34615.38/min [40000], rate=36363.64/min [50000], rate=40000.00/min [60000], rate=42857.14/min [70000], rate=46153.85/min [80000], rate=48000.00/min [90000], rate=50000.00/min [100000], rate=51282.05/min [110000], rate=52800.00/min [120000], rate=54135.34/min [130000], rate=52000.00/min [140000], rate=46666.67/min [150000], rate=44117.65/min [160000], rate=41739.13/min [170000], rate=40476.19/min [180000], rate=40000.00/min [190000], rate=40140.85/min [200000], rate=39603.96/min [210000], rate=39375.00/min [220000], rate=39169.14/min [230000], rate=38983.05/min [240000], rate=39560.44/min [250000], rate=39893.62/min [260000], rate=40414.51/min [270000], rate=39901.48/min [280000], rate=38532.11/min [290000], rate=36554.62/min [300000], rate=36144.58/min [310000], rate=36046.51/min [320000], rate=36571.43/min [330000], rate=36666.67/min [340000], rate=36624.78/min [350000], rate=36332.18/min [360000], rate=36363.64/min [370000], rate=35922.33/min [380000], rate=35736.68/min [390000], rate=35616.44/min [400000], rate=35608.31/min [410000], rate=35344.83/min [420000], rate=35097.49/min [430000], rate=34864.86/min [440000], rate=34419.82/min [450000], rate=33919.60/min [460000], rate=33617.54/min [470000], rate=33254.72/min [480000], rate=33488.37/min [490000], rate=33447.10/min [500000], rate=33259.42/min [510000], rate=33188.72/min [520000], rate=33121.02/min [530000], rate=33194.15/min [540000], rate=33471.07/min [550000], rate=33639.14/min [560000], rate=33905.15/min [570000], rate=34165.83/min [580000], rate=34421.36/min [590000], rate=34705.88/min [600000], rate=35019.46/min [610000], rate=35362.32/min [620000], rate=35632.18/min [630000], rate=35931.56/min [640000], rate=36260.62/min [650000], rate=36585.37/min [660000], rate=36768.80/min [670000], rate=37050.69/min [680000], rate=37192.34/min [690000], rate=37500.00/min [700000], rate=37803.78/min [710000], rate=38069.71/min [720000], rate=38400.00/min [730000], rate=38624.34/min [740000], rate=38575.15/min [750000], rate=38461.54/min [760000], rate=38578.68/min [770000], rate=38500.00/min [780000], rate=38423.65/min [790000], rate=38536.59/min [800000], rate=38616.25/min [810000], rate=38725.10/min [820000], rate=38924.05/min [830000], rate=39212.60/min [840000], rate=39405.79/min [850000], rate=39657.85/min [860000], rate=39907.19/min [870000], rate=40215.72/min [880000], rate=40584.17/min [890000], rate=40888.21/min [900000], rate=41315.99/min [910000], rate=41679.39/min [920000], rate=42009.13/min [930000], rate=42304.78/min [940000], rate=42662.63/min [950000], rate=42986.43/min [960000], rate=43275.73/min [970000], rate=43660.92/min [980000], rate=44077.96/min [990000], rate=44527.74/min [1000000], rate=44843.05/min [1010000], rate=45190.16/min [1020000], rate=45266.27/min [1030000], rate=45142.44/min [1040000], rate=45086.71/min [1050000], rate=44967.88/min [1060000], rate=45106.38/min [1070000], rate=45435.24/min [1080000], rate=45730.42/min [1090000], rate=45991.56/min [1100000], rate=46025.10/min [1110000], rate=46058.09/min [1120000], rate=46122.17/min [1130000], rate=46343.13/min [1140000], rate=46467.39/min [1150000], rate=46621.62/min [1160000], rate=46805.65/min [1170000], rate=47019.42/min [1180000], rate=47137.15/min [1190000], rate=47347.48/min [1200000], rate=47028.09/min [1210000], rate=46868.95/min [1220000], rate=47104.25/min [1230000], rate=47368.42/min [1240000], rate=47118.43/min [1250000], rate=46641.79/min [1260000], rate=46494.46/min [1270000], rate=46463.41/min [1280000], rate=46432.89/min [1290000], rate=46319.57/min [1300000], rate=46290.80/min [1310000], rate=46208.11/min [1320000], rate=46180.76/min [1330000], rate=46127.17/min [1340000], rate=46100.92/min [1350000], rate=46075.09/min [1360000], rate=46127.76/min [1370000], rate=46127.95/min [1380000], rate=46051.17/min [1390000], rate=46102.82/min [1400000], rate=46103.18/min [1410000], rate=46204.26/min [1420000], rate=46279.20/min [1430000], rate=46428.57/min [1440000], rate=46601.94/min [1450000], rate=46749.06/min [1460000], rate=46769.89/min [1470000], rate=46396.63/min [1480000], rate=45938.95/min [1490000], rate=45658.84/min [1500000], rate=45615.81/min [1510000], rate=45390.78/min [1520000], rate=45260.55/min [1530000], rate=45154.94/min [1540000], rate=45117.19/min [1550000], rate=45036.32/min [1560000], rate=44956.77/min [1570000], rate=44857.14/min [1580000], rate=44738.08/min [1590000], rate=44788.73/min [1600000], rate=44797.01/min [1610000], rate=44805.19/min [1620000], rate=44854.64/min [1630000], rate=44986.20/min [1640000], rate=45116.92/min [1650000], rate=45246.80/min [1660000], rate=45355.19/min [1670000], rate=45524.76/min [1680000], rate=45693.56/min [1690000], rate=45840.87/min [1700000], rate=45945.95/min [1710000], rate=46091.64/min [1720000], rate=46319.57/min [1730000], rate=46547.09/min [1740000], rate=46795.16/min [1750000], rate=46958.86/min [1760000], rate=47100.80/min [1770000], rate=47241.99/min [1780000], rate=47361.42/min [1790000], rate=47501.11/min [1800000], rate=47514.30/min [1810000], rate=47299.65/min [1820000], rate=47170.63/min [1830000], rate=46943.14/min [1840000], rate=46799.49/min [1850000], rate=46599.50/min [1860000], rate=46480.63/min [1870000], rate=46575.34/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.USOOXBODo0/ctat_genome_lib_build_dir --filt_file /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -parsing /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info. 0.00 reads per min processed... 12000000.00 reads per min processed... 18000000.00 reads per min processed... 12000000.00 reads per min processed... 15000000.00 reads per min processed... 12000000.00 reads per min processed... 14000000.00 reads per min processed... 9600000.00 reads per min processed... 9000000.00 reads per min processed... 7500000.00 reads per min processed... 7333333.33 reads per min processed... 7200000.00 reads per min processed... 7090909.09 reads per min processed... 6461538.46 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 5666666.67 reads per min processed... 5684210.53 reads per min processed... 5700000.00 reads per min processed... 5454545.45 reads per min processed... 5478260.87 reads per min processed... 5280000.00 reads per min processed... 5307692.31 reads per min processed... 5333333.33 reads per min processed... 5172413.79 reads per min processed... 5032258.06 reads per min processed... 5062500.00 reads per min processed... 5090909.09 reads per min processed... 4971428.57 reads per min processed... 5000000.00 reads per min processed... 4894736.84 reads per min processed... 4923076.92 reads per min processed... 4950000.00 reads per min processed... 4975609.76 reads per min processed... 5000000.00 reads per min processed... 5023255.81 reads per min processed... 5045454.55 reads per min processed... 5066666.67 reads per min processed... 4978723.40 reads per min processed... 5000000.00 reads per min processed... 5125000.00 reads per min processed... 5142857.14 reads per min processed... 5265306.12 reads per min processed... 5280000.00 reads per min processed... 5294117.65 reads per min processed... 5411764.71 reads per min processed... 5423076.92 reads per min processed... 5333333.33 reads per min processed... 5345454.55 reads per min processed... 5357142.86 reads per min processed... 5368421.05 reads per min processed... 5379310.34 reads per min processed... 5300000.00 reads per min processed... 5225806.45 reads per min processed... 5238095.24 reads per min processed... 5250000.00 reads per min processed... 5261538.46 reads per min processed... 5272727.27 reads per min processed... 5283582.09 reads per min processed... 5294117.65 reads per min processed... 5304347.83 reads per min processed... 5239436.62 reads per min processed... 5250000.00 reads per min processed... 5260273.97 reads per min processed... 5270270.27 reads per min processed... 5280000.00 reads per min processed... done. * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion -parsing fusion evidence: /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -outputting fusion candidates to file: /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.USOOXBODo0/HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.USOOXBODo0/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion CMD: mkdir -p /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.filter.intermediates_dir EM: Starting log likelihood: -109503.927209 EM: Round [1] log likelihood: -109265.968535 EM: Round [2] log likelihood: -109169.896573 EM: Round [3] log likelihood: -109123.682550 EM: Round [4] log likelihood: -109099.421214 EM: Round [5] log likelihood: -109085.893460 EM: Round [6] log likelihood: -109077.942532 EM: Round [7] log likelihood: -109073.032288 EM: Round [8] log likelihood: -109069.857741 EM: Round [9] log likelihood: -109067.719254 EM: Round [10] log likelihood: -109066.225912 EM: Round [11] log likelihood: -109065.150187 EM: Round [12] log likelihood: -109064.354398 EM: Round [13] log likelihood: -109063.752164 EM: Round [14] log likelihood: -109063.287465 EM: Round [15] log likelihood: -109062.922862 EM: Round [16] log likelihood: -109062.632641 EM: Round [17] log likelihood: -109062.398710 EM: Round [18] log likelihood: -109062.208057 EM: Round [19] log likelihood: -109062.051144 EM: Round [20] log likelihood: -109061.920860 EM: Round [21] log likelihood: -109061.811823 EM: Round [22] log likelihood: -109061.719905 EM: Round [23] log likelihood: -109061.641903 EM: Round [24] log likelihood: -109061.575305 EM: Round [25] log likelihood: -109061.518123 EM: Round [26] log likelihood: -109061.468766 EM: Round [27] log likelihood: -109061.425954 EM: Round [28] log likelihood: -109061.388651 EM: Round [29] log likelihood: -109061.356007 EM: Round [30] log likelihood: -109061.327325 EM: Round [31] log likelihood: -109061.302029 EM: Round [32] log likelihood: -109061.279639 EM: Round [33] log likelihood: -109061.259754 EM: Round [34] log likelihood: -109061.242036 EM: Round [35] log likelihood: -109061.226202 EM: Round [36] log likelihood: -109061.212011 EM: Round [37] log likelihood: -109061.199256 EM: Round [38] log likelihood: -109061.187762 EM: Round [39] log likelihood: -109061.177378 EM: Round [40] log likelihood: -109061.167975 EM: Round [41] log likelihood: -109061.159440 EM: Round [42] log likelihood: -109061.151676 EM: Round [43] log likelihood: -109061.144599 EM: Round [44] log likelihood: -109061.138134 EM: Round [45] log likelihood: -109061.132218 EM: Round [46] log likelihood: -109061.126793 EM: Round [47] log likelihood: -109061.121810 EM: Round [48] log likelihood: -109061.117226 EM: Round [49] log likelihood: -109061.113000 EM: Round [50] log likelihood: -109061.109099 EM: Round [51] log likelihood: -109061.105493 EM: Round [52] log likelihood: -109061.102154 EM: Round [53] log likelihood: -109061.099058 EM: Round [54] log likelihood: -109061.096184 EM: Round [55] log likelihood: -109061.093512 EM: Round [56] log likelihood: -109061.091024 EM: Round [57] log likelihood: -109061.088706 EM: Round [58] log likelihood: -109061.086543 EM: Round [59] log likelihood: -109061.084523 EM: Round [60] log likelihood: -109061.082634 EM: Round [61] log likelihood: -109061.080865 EM: Round [62] log likelihood: -109061.079208 EM: Round [63] log likelihood: -109061.077654 EM: Round [64] log likelihood: -109061.076194 EM: Round [65] log likelihood: -109061.074823 EM: Round [66] log likelihood: -109061.073533 EM: Round [67] log likelihood: -109061.072320 EM: Round [68] log likelihood: -109061.071176 EM: Round [69] log likelihood: -109061.070098 EM: Round [70] log likelihood: -109061.069081 EM: Round [71] log likelihood: -109061.068121 EM: Round [72] log likelihood: -109061.067213 EM: Round [73] log likelihood: -109061.066356 EM: Round [74] log likelihood: -109061.065544 EM: Round [75] log likelihood: -109061.064776 EM: Round [76] log likelihood: -109061.064048 EM: Round [77] log likelihood: -109061.063358 EM: Round [78] log likelihood: -109061.062704 EM: Round [79] log likelihood: -109061.062083 EM: Round [80] log likelihood: -109061.061493 EM: Round [81] log likelihood: -109061.060934 EM: Round [82] log likelihood: -109061.060401 EM: Round [83] log likelihood: -109061.059895 EM: Round [84] log likelihood: -109061.059414 EM: Round [85] log likelihood: -109061.058956 EM: Round [86] log likelihood: -109061.058519 EM: Round [87] log likelihood: -109061.058103 EM: Round [88] log likelihood: -109061.057707 EM: Round [89] log likelihood: -109061.057329 EM: Round [90] log likelihood: -109061.056969 EM: Round [91] log likelihood: -109061.056625 EM: Round [92] log likelihood: -109061.056297 EM: Round [93] log likelihood: -109061.055983 EM: Round [94] log likelihood: -109061.055684 EM: Round [95] log likelihood: -109061.055397 EM: Round [96] log likelihood: -109061.055124 EM: Round [97] log likelihood: -109061.054862 EM: Round [98] log likelihood: -109061.054612 EM: Round [99] log likelihood: -109061.054372 EM: Round [100] log likelihood: -109061.054142 EM: Round [101] log likelihood: -109061.053923 EM: Round [102] log likelihood: -109061.053712 EM: Round [103] log likelihood: -109061.053510 EM: Round [104] log likelihood: -109061.053317 EM: Round [105] log likelihood: -109061.053131 EM: Round [106] log likelihood: -109061.052953 EM: Round [107] log likelihood: -109061.052783 EM: Round [108] log likelihood: -109061.052619 EM: Round [109] log likelihood: -109061.052462 EM: Round [110] log likelihood: -109061.052311 EM: Round [111] log likelihood: -109061.052166 EM: Round [112] log likelihood: -109061.052026 EM: Round [113] log likelihood: -109061.051892 EM: Round [114] log likelihood: -109061.051763 EM: Round [115] log likelihood: -109061.051640 EM: Round [116] log likelihood: -109061.051520 EM: Round [117] log likelihood: -109061.051406 EM: Round [118] log likelihood: -109061.051295 EM: Round [119] log likelihood: -109061.051189 EM: Round [120] log likelihood: -109061.051087 EM: Round [121] log likelihood: -109061.050988 EM: Stopping iterations at round 121 due to insufficient improvement in likelihood. EM: Starting log likelihood: -108943.858974 EM: Round [1] log likelihood: -108747.200196 EM: Round [2] log likelihood: -108670.744886 EM: Round [3] log likelihood: -108634.841972 EM: Round [4] log likelihood: -108616.360946 EM: Round [5] log likelihood: -108606.232438 EM: Round [6] log likelihood: -108600.373737 EM: Round [7] log likelihood: -108596.808795 EM: Round [8] log likelihood: -108594.533952 EM: Round [9] log likelihood: -108593.018003 EM: Round [10] log likelihood: -108591.968264 EM: Round [11] log likelihood: -108591.216865 EM: Round [12] log likelihood: -108590.663646 EM: Round [13] log likelihood: -108590.246535 EM: Round [14] log likelihood: -108589.925675 EM: Round [15] log likelihood: -108589.674619 EM: Round [16] log likelihood: -108589.475295 EM: Round [17] log likelihood: -108589.315032 EM: Round [18] log likelihood: -108589.184736 EM: Round [19] log likelihood: -108589.077753 EM: Round [20] log likelihood: -108588.989132 EM: Round [21] log likelihood: -108588.915128 EM: Round [22] log likelihood: -108588.852878 EM: Round [23] log likelihood: -108588.800161 EM: Round [24] log likelihood: -108588.755240 EM: Round [25] log likelihood: -108588.716743 EM: Round [26] log likelihood: -108588.683574 EM: Round [27] log likelihood: -108588.654855 EM: Round [28] log likelihood: -108588.629872 EM: Round [29] log likelihood: -108588.608045 EM: Round [30] log likelihood: -108588.588898 EM: Round [31] log likelihood: -108588.572036 EM: Round [32] log likelihood: -108588.557133 EM: Round [33] log likelihood: -108588.543916 EM: Round [34] log likelihood: -108588.532156 EM: Round [35] log likelihood: -108588.521660 EM: Round [36] log likelihood: -108588.512263 EM: Round [37] log likelihood: -108588.503828 EM: Round [38] log likelihood: -108588.496234 EM: Round [39] log likelihood: -108588.489381 EM: Round [40] log likelihood: -108588.483179 EM: Round [41] log likelihood: -108588.477555 EM: Round [42] log likelihood: -108588.472442 EM: Round [43] log likelihood: -108588.467784 EM: Round [44] log likelihood: -108588.463531 EM: Round [45] log likelihood: -108588.459639 EM: Round [46] log likelihood: -108588.456071 EM: Round [47] log likelihood: -108588.452794 EM: Round [48] log likelihood: -108588.449779 EM: Round [49] log likelihood: -108588.446999 EM: Round [50] log likelihood: -108588.444432 EM: Round [51] log likelihood: -108588.442057 EM: Round [52] log likelihood: -108588.439858 EM: Round [53] log likelihood: -108588.437817 EM: Round [54] log likelihood: -108588.435920 EM: Round [55] log likelihood: -108588.434155 EM: Round [56] log likelihood: -108588.432511 EM: Round [57] log likelihood: -108588.430977 EM: Round [58] log likelihood: -108588.429544 EM: Round [59] log likelihood: -108588.428204 EM: Round [60] log likelihood: -108588.426949 EM: Round [61] log likelihood: -108588.425772 EM: Round [62] log likelihood: -108588.424668 EM: Round [63] log likelihood: -108588.423631 EM: Round [64] log likelihood: -108588.422656 EM: Round [65] log likelihood: -108588.421739 EM: Round [66] log likelihood: -108588.420874 EM: Round [67] log likelihood: -108588.420060 EM: Round [68] log likelihood: -108588.419291 EM: Round [69] log likelihood: -108588.418565 EM: Round [70] log likelihood: -108588.417878 EM: Round [71] log likelihood: -108588.417230 EM: Round [72] log likelihood: -108588.416615 EM: Round [73] log likelihood: -108588.416034 EM: Round [74] log likelihood: -108588.415483 EM: Round [75] log likelihood: -108588.414960 EM: Round [76] log likelihood: -108588.414464 EM: Round [77] log likelihood: -108588.413993 EM: Round [78] log likelihood: -108588.413546 EM: Round [79] log likelihood: -108588.413121 EM: Round [80] log likelihood: -108588.412717 EM: Round [81] log likelihood: -108588.412332 EM: Round [82] log likelihood: -108588.411966 EM: Round [83] log likelihood: -108588.411618 EM: Round [84] log likelihood: -108588.411286 EM: Round [85] log likelihood: -108588.410969 EM: Round [86] log likelihood: -108588.410667 EM: Round [87] log likelihood: -108588.410379 EM: Round [88] log likelihood: -108588.410104 EM: Round [89] log likelihood: -108588.409842 EM: Round [90] log likelihood: -108588.409591 EM: Round [91] log likelihood: -108588.409352 EM: Round [92] log likelihood: -108588.409123 EM: Round [93] log likelihood: -108588.408904 EM: Round [94] log likelihood: -108588.408694 EM: Round [95] log likelihood: -108588.408494 EM: Round [96] log likelihood: -108588.408302 EM: Round [97] log likelihood: -108588.408118 EM: Round [98] log likelihood: -108588.407942 EM: Round [99] log likelihood: -108588.407773 EM: Round [100] log likelihood: -108588.407611 EM: Round [101] log likelihood: -108588.407456 EM: Round [102] log likelihood: -108588.407308 EM: Round [103] log likelihood: -108588.407165 EM: Round [104] log likelihood: -108588.407028 EM: Round [105] log likelihood: -108588.406897 EM: Round [106] log likelihood: -108588.406770 EM: Round [107] log likelihood: -108588.406649 EM: Round [108] log likelihood: -108588.406532 EM: Round [109] log likelihood: -108588.406420 EM: Round [110] log likelihood: -108588.406313 EM: Round [111] log likelihood: -108588.406209 EM: Round [112] log likelihood: -108588.406109 EM: Stopping iterations at round 112 due to insufficient improvement in likelihood. CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.USOOXBODo0/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.USOOXBODo0/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.USOOXBODo0/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20 CMD: cp /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged CMD: ln -sf /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered * Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 97538734 > /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM * Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.USOOXBODo0/ctat_genome_lib_build_dir > /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.USOOXBODo0/ctat_genome_lib_build_dir --annotate /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot * Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.USOOXBODo0/ctat_genome_lib_build_dir -done, see /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass * Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.USOOXBODo0/ctat_genome_lib_build_dir -filter_likely_RT_artifacts: (pass: 476, filtered: 4833) * Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001 * Running CMD: cp /tmp/nxf.USOOXBODo0/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv * Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.USOOXBODo0/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv WARNING, no entry stored in dbm for [ENSG00000234715.2] WARNING, no entry stored in dbm for [IGL.g@-ext] WARNING, no entry stored in dbm for [ENSG00000260236.1] WARNING, no entry stored in dbm for [IGL-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000224086.6] WARNING, no entry stored in dbm for [ENSG00000251314.2] WARNING, no entry stored in dbm for [ENSG00000277654.6] WARNING, no entry stored in dbm for [IGL-.g@-ext] WARNING, no entry stored in dbm for [IGL.g@-ext] WARNING, no entry stored in dbm for [ENSG00000260236.1] WARNING, no entry stored in dbm for [IGL.g@-ext] WARNING, no entry stored in dbm for [ENSG00000257180.1] WARNING, no entry stored in dbm for [ENSG00000223508.5] WARNING, no entry stored in dbm for [ENSG00000262898.3] WARNING, no entry stored in dbm for [ENSG00000276047.1] WARNING, no entry stored in dbm for [ENSG00000240869.3] WARNING, no entry stored in dbm for [ENSG00000240869.3] WARNING, no entry stored in dbm for [ENSG00000242547.3] WARNING, no entry stored in dbm for [IGL.g@-ext] WARNING, no entry stored in dbm for [IGL.g@-ext] WARNING, no entry stored in dbm for [IGL.g@-ext] WARNING, no entry stored in dbm for [ENSG00000214039.9] WARNING, no entry stored in dbm for [ENSG00000237296.9] WARNING, no entry stored in dbm for [IGL.g@-ext] WARNING, no entry stored in dbm for [IGL.g@-ext] WARNING, no entry stored in dbm for [IGL-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000225851.1] WARNING, no entry stored in dbm for [ENSG00000271162.1] WARNING, no entry stored in dbm for [ENSG00000239521.9] WARNING, no entry stored in dbm for [ENSG00000224415.1] WARNING, no entry stored in dbm for [ENSG00000287985.1] WARNING, no entry stored in dbm for [ENSG00000232096.1] WARNING, no entry stored in dbm for [ENSG00000282458.1] WARNING, no entry stored in dbm for [ENSG00000234769.7] WARNING, no entry stored in dbm for [ENSG00000248656.3] WARNING, no entry stored in dbm for [ENSG00000245750.10] WARNING, no entry stored in dbm for [ENSG00000251391.5] WARNING, no entry stored in dbm for [ENSG00000237938.5] WARNING, no entry stored in dbm for [ENSG00000228791.8] WARNING, no entry stored in dbm for [ENSG00000240549.2] WARNING, no entry stored in dbm for [ENSG00000254465.1] WARNING, no entry stored in dbm for [ENSG00000230521.1] WARNING, no entry stored in dbm for [ENSG00000277072.5] WARNING, no entry stored in dbm for [ENSG00000286423.1] WARNING, no entry stored in dbm for [ENSG00000253408.6] WARNING, no entry stored in dbm for [ENSG00000163597.15] WARNING, no entry stored in dbm for [ENSG00000239397.1] WARNING, no entry stored in dbm for [ENSG00000283426.1] WARNING, no entry stored in dbm for [ENSG00000185485.14] WARNING, no entry stored in dbm for [ENSG00000237296.9] WARNING, no entry stored in dbm for [ENSG00000287665.1] WARNING, no entry stored in dbm for [ENSG00000198054.12] WARNING, no entry stored in dbm for [ENSG00000255042.3] WARNING, no entry stored in dbm for [ENSG00000185485.14] WARNING, no entry stored in dbm for [ENSG00000224897.8] WARNING, no entry stored in dbm for [ENSG00000227681.5] WARNING, no entry stored in dbm for [ENSG00000228000.1] WARNING, no entry stored in dbm for [ENSG00000184139.8] WARNING, no entry stored in dbm for [ENSG00000215869.4] WARNING, no entry stored in dbm for [ENSG00000213872.3] WARNING, no entry stored in dbm for [ENSG00000243944.5] WARNING, no entry stored in dbm for [ENSG00000225661.7] WARNING, no entry stored in dbm for [ENSG00000224987.1] WARNING, no entry stored in dbm for [ENSG00000237169.1] WARNING, no entry stored in dbm for [ENSG00000233940.1] WARNING, no entry stored in dbm for [ENSG00000237169.1] WARNING, no entry stored in dbm for [ENSG00000235330.2] WARNING, no entry stored in dbm for [ENSG00000237169.1] WARNING, no entry stored in dbm for [ENSG00000226279.2] WARNING, no entry stored in dbm for [ENSG00000230853.1] WARNING, no entry stored in dbm for [ENSG00000252772.1] WARNING, no entry stored in dbm for [ENSG00000201469.1] WARNING, no entry stored in dbm for [ENSG00000264618.2] WARNING, no entry stored in dbm for [ENSG00000240869.3] WARNING, no entry stored in dbm for [ENSG00000240606.3] WARNING, no entry stored in dbm for [ENSG00000240869.3] WARNING, no entry stored in dbm for [ENSG00000242559.3] WARNING, no entry stored in dbm for [ENSG00000240869.3] WARNING, no entry stored in dbm for [ENSG00000229531.6] WARNING, no entry stored in dbm for [ENSG00000270025.2] WARNING, no entry stored in dbm for [ENSG00000248466.1] WARNING, no entry stored in dbm for [ENSG00000279217.1] WARNING, no entry stored in dbm for [ENSG00000226648.2] WARNING, no entry stored in dbm for [ENSG00000254248.1] WARNING, no entry stored in dbm for [ENSG00000242686.4] WARNING, no entry stored in dbm for [ENSG00000257453.1] WARNING, no entry stored in dbm for [ENSG00000239791.2] WARNING, no entry stored in dbm for [ENSG00000244479.7] WARNING, no entry stored in dbm for [ENSG00000204959.4] WARNING, no entry stored in dbm for [ENSG00000243847.3] WARNING, no entry stored in dbm for [ENSG00000232728.1] WARNING, no entry stored in dbm for [ENSG00000287996.1] WARNING, no entry stored in dbm for [ENSG00000283426.1] WARNING, no entry stored in dbm for [ENSG00000270230.1] WARNING, no entry stored in dbm for [ENSG00000226696.6] WARNING, no entry stored in dbm for [ENSG00000186715.11] WARNING, no entry stored in dbm for [ENSG00000237399.7] WARNING, no entry stored in dbm for [ENSG00000232527.8] WARNING, no entry stored in dbm for [ENSG00000272779.1] WARNING, no entry stored in dbm for [ENSG00000229051.2] WARNING, no entry stored in dbm for [ENSG00000225518.3] WARNING, no entry stored in dbm for [ENSG00000235437.8] WARNING, no entry stored in dbm for [ENSG00000235703.6] WARNING, no entry stored in dbm for [ENSG00000235621.9] WARNING, no entry stored in dbm for [ENSG00000226903.2] WARNING, no entry stored in dbm for [ENSG00000224243.2] WARNING, no entry stored in dbm for [ENSG00000225643.1] WARNING, no entry stored in dbm for [ENSG00000257125.1] WARNING, no entry stored in dbm for [ENSG00000198496.12] WARNING, no entry stored in dbm for [ENSG00000224431.1] WARNING, no entry stored in dbm for [ENSG00000287972.1] WARNING, no entry stored in dbm for [ENSG00000214433.4] WARNING, no entry stored in dbm for [ENSG00000265962.1] WARNING, no entry stored in dbm for [ENSG00000235964.1] WARNING, no entry stored in dbm for [ENSG00000228221.6] WARNING, no entry stored in dbm for [ENSG00000261642.1] WARNING, no entry stored in dbm for [ENSG00000232676.1] WARNING, no entry stored in dbm for [ENSG00000230239.1] WARNING, no entry stored in dbm for [ENSG00000241743.4] WARNING, no entry stored in dbm for [ENSG00000271569.1] WARNING, no entry stored in dbm for [ENSG00000260515.1] WARNING, no entry stored in dbm for [ENSG00000259603.1] WARNING, no entry stored in dbm for [ENSG00000283674.3] WARNING, no entry stored in dbm for [ENSG00000259295.6] WARNING, no entry stored in dbm for [ENSG00000272235.1] WARNING, no entry stored in dbm for [ENSG00000237986.4] WARNING, no entry stored in dbm for [ENSG00000249785.3] WARNING, no entry stored in dbm for [ENSG00000223773.7] WARNING, no entry stored in dbm for [ENSG00000225471.5] WARNING, no entry stored in dbm for [ENSG00000288091.1] WARNING, no entry stored in dbm for [ENSG00000253452.6] WARNING, no entry stored in dbm for [ENSG00000158482.10] WARNING, no entry stored in dbm for [ENSG00000226948.2] WARNING, no entry stored in dbm for [ENSG00000227288.3] WARNING, no entry stored in dbm for [ENSG00000261239.6] WARNING, no entry stored in dbm for [ENSG00000255449.1] WARNING, no entry stored in dbm for [ENSG00000254902.1] WARNING, no entry stored in dbm for [ENSG00000230006.7] WARNING, no entry stored in dbm for [ENSG00000226235.1] WARNING, no entry stored in dbm for [ENSG00000230021.10] WARNING, no entry stored in dbm for [ENSG00000230013.2] WARNING, no entry stored in dbm for [ENSG00000246203.2] WARNING, no entry stored in dbm for [ENSG00000230490.3] WARNING, no entry stored in dbm for [ENSG00000200434.1] WARNING, no entry stored in dbm for [ENSG00000284620.2] WARNING, no entry stored in dbm for [ENSG00000287860.1] WARNING, no entry stored in dbm for [ENSG00000282572.2] WARNING, no entry stored in dbm for [ENSG00000279480.1] WARNING, no entry stored in dbm for [ENSG00000259972.3] WARNING, no entry stored in dbm for [ENSG00000240036.4] WARNING, no entry stored in dbm for [ENSG00000280042.1] WARNING, no entry stored in dbm for [ENSG00000286528.1] WARNING, no entry stored in dbm for [ENSG00000229807.12] WARNING, no entry stored in dbm for [ENSG00000242169.2] WARNING, no entry stored in dbm for [ENSG00000227777.1] WARNING, no entry stored in dbm for [ENSG00000264151.6] WARNING, no entry stored in dbm for [ENSG00000263244.2] WARNING, no entry stored in dbm for [ENSG00000224244.1] WARNING, no entry stored in dbm for [ENSG00000255498.1] WARNING, no entry stored in dbm for [ENSG00000205682.2] WARNING, no entry stored in dbm for [ENSG00000286970.1] WARNING, no entry stored in dbm for [ENSG00000234929.2] WARNING, no entry stored in dbm for [ENSG00000263345.1] WARNING, no entry stored in dbm for [ENSG00000262879.6] WARNING, no entry stored in dbm for [ENSG00000262879.6] WARNING, no entry stored in dbm for [ENSG00000229988.2] WARNING, no entry stored in dbm for [ENSG00000231704.6] * STAR-Fusion complete. See output: /tmp/nxf.USOOXBODo0/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)