.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT (FFPE_V4_0001_RNA_0001_B23LG7FLT4_2)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/553aa26df4d70886cf7da3e4af7c27/.command.log
Size: 1.2 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT (FFPE_V4_0001_RNA_0001_B23LG7FLT4_2)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/553aa26df4d70886cf7da3e4af7c27/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/ae4a0cf5eee873a5dc13399f1c944f/FFPE_V4_0001_RNA_0001_B23LG7FLT4_2.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/f13f091364b219f62d208ba65ca4a9/FFPE_V4_0001_RNA_0001_B23LG7FLT4_2.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/hgnc/hgnc_complete_set.txt
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/hgnc/HGNC-DB-timestamp.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/ffd95c8320904fcd0eb71c5ec84d7c/FFPE_V4_0001_RNA_0001_B23LG7FLT4_2_fusionreport_index.html
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/ffd95c8320904fcd0eb71c5ec84d7c/FFPE_V4_0001_RNA_0001_B23LG7FLT4_2.fusions.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/553aa26df4d70886cf7da3e4af7c27/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/62deff7f4e95d29602b6481a203987/FFPE_V4_0001_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.abridged.tsv.annotated.coding_effect
==> STAGING COMPLETE (9 inputs)