Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/e9a1382d4620350c130d1812e05916/NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/aff247492726abb21e9720b843dd87/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/aff247492726abb21e9720b843dd87/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory