Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/050530e0a2a21b685b087ae2aa4bd4/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/09e64e4e66969510b72fe446395c1f/fi_workdir/FFPE_HD789_01_RNA_0004_B23LG7FLT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/050530e0a2a21b685b087ae2aa4bd4/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 14681
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 14681
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:14681
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 4 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
ANTXR1--AC011897.1 HAVANA gene 1004 38502 . + . FI_gene_label "ANTXR1^ENSG00000169604.21" ; ID "ANTXR1--AC011897.1^ANTXR1^ENSG00000169604.21" ; ccdsid "CCDS1892.1" ; exon_id "ENSE00001920255.2" ; exon_number 1 ; gene_id "ANTXR1--AC011897.1^ANTXR1^ENSG00000169604.21" ; gene_name ANTXR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129575.7" ; havana_transcript "OTTHUMT00000251770.2" ; hgnc_id "HGNC:21014" ; level 2 ; orig_coord_info "chr2,69013500,69013651,+" ; protein_id "ENSP00000301945.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANTXR1--AC011897.1^ENST00000303714.9" ; transcript_name "ANTXR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ANTXR1--AC011897.1 HAVANA mRNA 1004 38502 . + . FI_gene_label "ANTXR1^ENSG00000169604.21" ; ID "ANTXR1--AC011897.1^ENST00000303714.9" ; Parent "ANTXR1--AC011897.1^ANTXR1^ENSG00000169604.21" ; ccdsid "CCDS1892.1" ; exon_id "ENSE00001920255.2" ; exon_number 1 ; gene_id "ANTXR1--AC011897.1^ANTXR1^ENSG00000169604.21" ; gene_name ANTXR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129575.7" ; havana_transcript "OTTHUMT00000251770.2" ; hgnc_id "HGNC:21014" ; level 2 ; orig_coord_info "chr2,69013500,69013651,+" ; protein_id "ENSP00000301945.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANTXR1--AC011897.1^ENST00000303714.9" ; transcript_name "ANTXR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANTXR1--RN7SKP168 HAVANA gene 1004 38502 . + . FI_gene_label "ANTXR1^ENSG00000169604.21" ; ID "ANTXR1--RN7SKP168^ANTXR1^ENSG00000169604.21" ; ccdsid "CCDS1892.1" ; exon_id "ENSE00001920255.2" ; exon_number 1 ; gene_id "ANTXR1--RN7SKP168^ANTXR1^ENSG00000169604.21" ; gene_name ANTXR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129575.7" ; havana_transcript "OTTHUMT00000251770.2" ; hgnc_id "HGNC:21014" ; level 2 ; orig_coord_info "chr2,69013500,69013651,+" ; protein_id "ENSP00000301945.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANTXR1--RN7SKP168^ENST00000303714.9" ; transcript_name "ANTXR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ANTXR1--RN7SKP168 HAVANA mRNA 1004 38502 . + . FI_gene_label "ANTXR1^ENSG00000169604.21" ; ID "ANTXR1--RN7SKP168^ENST00000303714.9" ; Parent "ANTXR1--RN7SKP168^ANTXR1^ENSG00000169604.21" ; ccdsid "CCDS1892.1" ; exon_id "ENSE00001920255.2" ; exon_number 1 ; gene_id "ANTXR1--RN7SKP168^ANTXR1^ENSG00000169604.21" ; gene_name ANTXR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129575.7" ; havana_transcript "OTTHUMT00000251770.2" ; hgnc_id "HGNC:21014" ; level 2 ; orig_coord_info "chr2,69013500,69013651,+" ; protein_id "ENSP00000301945.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANTXR1--RN7SKP168^ENST00000303714.9" ; transcript_name "ANTXR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANTXR1--ZFYVE9P2 HAVANA gene 1004 38502 . + . FI_gene_label "ANTXR1^ENSG00000169604.21" ; ID "ANTXR1--ZFYVE9P2^ANTXR1^ENSG00000169604.21" ; ccdsid "CCDS1892.1" ; exon_id "ENSE00001920255.2" ; exon_number 1 ; gene_id "ANTXR1--ZFYVE9P2^ANTXR1^ENSG00000169604.21" ; gene_name ANTXR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129575.7" ; havana_transcript "OTTHUMT00000251770.2" ; hgnc_id "HGNC:21014" ; level 2 ; orig_coord_info "chr2,69013500,69013651,+" ; protein_id "ENSP00000301945.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANTXR1--ZFYVE9P2^ENST00000303714.9" ; transcript_name "ANTXR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ANTXR1--ZFYVE9P2 HAVANA mRNA 1004 38502 . + . FI_gene_label "ANTXR1^ENSG00000169604.21" ; ID "ANTXR1--ZFYVE9P2^ENST00000303714.9" ; Parent "ANTXR1--ZFYVE9P2^ANTXR1^ENSG00000169604.21" ; ccdsid "CCDS1892.1" ; exon_id "ENSE00001920255.2" ; exon_number 1 ; gene_id "ANTXR1--ZFYVE9P2^ANTXR1^ENSG00000169604.21" ; gene_name ANTXR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129575.7" ; havana_transcript "OTTHUMT00000251770.2" ; hgnc_id "HGNC:21014" ; level 2 ; orig_coord_info "chr2,69013500,69013651,+" ; protein_id "ENSP00000301945.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANTXR1--ZFYVE9P2^ENST00000303714.9" ; transcript_name "ANTXR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANTXR2--TNFSF10 HAVANA gene 35885 44644 . + . FI_gene_label "TNFSF10^ENSG00000121858.11" ; ID "ANTXR2--TNFSF10^TNFSF10^ENSG00000121858.11" ; ccdsid "CCDS3219.1" ; exon_id "ENSE00001929619.2" ; exon_number 1 ; gene_id "ANTXR2--TNFSF10^TNFSF10^ENSG00000121858.11" ; gene_name TNFSF10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156917.3" ; havana_transcript "OTTHUMT00000346601.2" ; hgnc_id "HGNC:11925" ; level 2 ; orig_coord_info "chr3,172523253,172523384,-" ; protein_id "ENSP00000241261.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANTXR2--TNFSF10^ENST00000241261.7" ; transcript_name "TNFSF10-201" ; transcript_support_level 1 ; transcript_type protein_coding
ANTXR2--TNFSF10 HAVANA mRNA 35885 44644 . + . FI_gene_label "TNFSF10^ENSG00000121858.11" ; ID "ANTXR2--TNFSF10^ENST00000241261.7" ; Parent "ANTXR2--TNFSF10^TNFSF10^ENSG00000121858.11" ; ccdsid "CCDS3219.1" ; exon_id "ENSE00001929619.2" ; exon_number 1 ; gene_id "ANTXR2--TNFSF10^TNFSF10^ENSG00000121858.11" ; gene_name TNFSF10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156917.3" ; havana_transcript "OTTHUMT00000346601.2" ; hgnc_id "HGNC:11925" ; level 2 ; orig_coord_info "chr3,172523253,172523384,-" ; protein_id "ENSP00000241261.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ANTXR2--TNFSF10^ENST00000241261.7" ; transcript_name "TNFSF10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANTXR2--TNFSF10 HAVANA gene 7894 22794 . + . FI_gene_label "ANTXR2^ENSG00000163297.18" ; ID "ANTXR2--TNFSF10^ANTXR2^ENSG00000163297.18" ; ccdsid "CCDS47086.1" ; exon_id "ENSE00001871464.1" ; exon_number 1 ; gene_id "ANTXR2--TNFSF10^ANTXR2^ENSG00000163297.18" ; gene_name ANTXR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151982.4" ; havana_transcript "OTTHUMT00000324663.2" ; hgnc_id "HGNC:21732" ; level 2 ; orig_coord_info "chr4,80072409,80072560,-" ; protein_id "ENSP00000306185.6" ; tag basic CCDS ; transcript_id "ANTXR2--TNFSF10^ENST00000307333.7" ; transcript_name "ANTXR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ANTXR2--TNFSF10 HAVANA mRNA 7894 22794 . + . FI_gene_label "ANTXR2^ENSG00000163297.18" ; ID "ANTXR2--TNFSF10^ENST00000307333.7" ; Parent "ANTXR2--TNFSF10^ANTXR2^ENSG00000163297.18" ; ccdsid "CCDS47086.1" ; exon_id "ENSE00001871464.1" ; exon_number 1 ; gene_id "ANTXR2--TNFSF10^ANTXR2^ENSG00000163297.18" ; gene_name ANTXR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151982.4" ; havana_transcript "OTTHUMT00000324663.2" ; hgnc_id "HGNC:21732" ; level 2 ; orig_coord_info "chr4,80072409,80072560,-" ; protein_id "ENSP00000306185.6" ; tag basic CCDS ; transcript_id "ANTXR2--TNFSF10^ENST00000307333.7" ; transcript_name "ANTXR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
B9D1--CD82 HAVANA gene 24151 38631 . + . FI_gene_label "CD82^ENSG00000085117.12" ; ID "B9D1--CD82^CD82^ENSG00000085117.12" ; ccdsid "CCDS7909.1" ; exon_id "ENSE00003688271.1" ; exon_number 3 ; gene_id "B9D1--CD82^CD82^ENSG00000085117.12" ; gene_name CD82 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166472.3" ; havana_transcript "OTTHUMT00000389886.2" ; hgnc_id "HGNC:6210" ; level 2 ; orig_coord_info "chr11,44594663,44594725,+" ; protein_id "ENSP00000227155.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "B9D1--CD82^ENST00000227155.9" ; transcript_name "CD82-201" ; transcript_support_level 1 ; transcript_type protein_coding
B9D1--CD82 HAVANA mRNA 24151 38631 . + . FI_gene_label "CD82^ENSG00000085117.12" ; ID "B9D1--CD82^ENST00000227155.9" ; Parent "B9D1--CD82^CD82^ENSG00000085117.12" ; ccdsid "CCDS7909.1" ; exon_id "ENSE00003688271.1" ; exon_number 3 ; gene_id "B9D1--CD82^CD82^ENSG00000085117.12" ; gene_name CD82 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166472.3" ; havana_transcript "OTTHUMT00000389886.2" ; hgnc_id "HGNC:6210" ; level 2 ; orig_coord_info "chr11,44594663,44594725,+" ; protein_id "ENSP00000227155.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "B9D1--CD82^ENST00000227155.9" ; transcript_name "CD82-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
B9D1--CD82 HAVANA gene 6218 12619 . + . FI_gene_label "B9D1^ENSG00000108641.19" ; ID "B9D1--CD82^B9D1^ENSG00000108641.19" ; ccdsid "CCDS11205.1" ; exon_id "ENSE00003873219.1" ; exon_number 1 ; gene_id "B9D1--CD82^B9D1^ENSG00000108641.19" ; gene_name B9D1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059586.17" ; havana_transcript "OTTHUMT00000132494.3" ; hgnc_id "HGNC:24123" ; level 2 ; orig_coord_info "chr17,19362507,19362569,-" ; protein_id "ENSP00000261499.4" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_1 CCDS ; transcript_id "B9D1--CD82^ENST00000261499.10" ; transcript_name "B9D1-201" ; transcript_support_level 1 ; transcript_type protein_coding
B9D1--CD82 HAVANA mRNA 6218 12619 . + . FI_gene_label "B9D1^ENSG00000108641.19" ; ID "B9D1--CD82^ENST00000261499.10" ; Parent "B9D1--CD82^B9D1^ENSG00000108641.19" ; ccdsid "CCDS11205.1" ; exon_id "ENSE00003873219.1" ; exon_number 1 ; gene_id "B9D1--CD82^B9D1^ENSG00000108641.19" ; gene_name B9D1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059586.17" ; havana_transcript "OTTHUMT00000132494.3" ; hgnc_id "HGNC:24123" ; level 2 ; orig_coord_info "chr17,19362507,19362569,-" ; protein_id "ENSP00000261499.4" ; tag 3_standard_supported_extension basic MANE_Select appris_principal_1 CCDS ; transcript_id "B9D1--CD82^ENST00000261499.10" ; transcript_name "B9D1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCL2L13--EP300 HAVANA gene 20672 58726 . + . FI_gene_label "EP300^ENSG00000100393.14" ; ID "BCL2L13--EP300^EP300^ENSG00000100393.14" ; ccdsid "CCDS14010.1" ; exon_id "ENSE00001343011.8" ; exon_number 1 ; gene_id "BCL2L13--EP300^EP300^ENSG00000100393.14" ; gene_name EP300 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150937.7" ; havana_transcript "OTTHUMT00000320600.3" ; hgnc_id "HGNC:3373" ; level 2 ; orig_coord_info "chr22,41093005,41093098,+" ; protein_id "ENSP00000263253.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "BCL2L13--EP300^ENST00000263253.9" ; transcript_name "EP300-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCL2L13--EP300 HAVANA mRNA 20672 58726 . + . FI_gene_label "EP300^ENSG00000100393.14" ; ID "BCL2L13--EP300^ENST00000263253.9" ; Parent "BCL2L13--EP300^EP300^ENSG00000100393.14" ; ccdsid "CCDS14010.1" ; exon_id "ENSE00001343011.8" ; exon_number 1 ; gene_id "BCL2L13--EP300^EP300^ENSG00000100393.14" ; gene_name EP300 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150937.7" ; havana_transcript "OTTHUMT00000320600.3" ; hgnc_id "HGNC:3373" ; level 2 ; orig_coord_info "chr22,41093005,41093098,+" ; protein_id "ENSP00000263253.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "BCL2L13--EP300^ENST00000263253.9" ; transcript_name "EP300-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCL2L13--EP300 HAVANA gene 2807 17671 . + . FI_gene_label "BCL2L13^ENSG00000099968.18" ; ID "BCL2L13--EP300^BCL2L13^ENSG00000099968.18" ; ccdsid "CCDS13746.1" ; exon_id "ENSE00003723905.1" ; exon_number 2 ; gene_id "BCL2L13--EP300^BCL2L13^ENSG00000099968.18" ; gene_name BCL2L13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150088.4" ; havana_transcript "OTTHUMT00000316184.2" ; hgnc_id "HGNC:17164" ; level 2 ; orig_coord_info "chr22,17655712,17655832,+" ; protein_id "ENSP00000318883.5" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "BCL2L13--EP300^ENST00000317582.10" ; transcript_name "BCL2L13-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCL2L13--EP300 HAVANA mRNA 2807 17671 . + . FI_gene_label "BCL2L13^ENSG00000099968.18" ; ID "BCL2L13--EP300^ENST00000317582.10" ; Parent "BCL2L13--EP300^BCL2L13^ENSG00000099968.18" ; ccdsid "CCDS13746.1" ; exon_id "ENSE00003723905.1" ; exon_number 2 ; gene_id "BCL2L13--EP300^BCL2L13^ENSG00000099968.18" ; gene_name BCL2L13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150088.4" ; havana_transcript "OTTHUMT00000316184.2" ; hgnc_id "HGNC:17164" ; level 2 ; orig_coord_info "chr22,17655712,17655832,+" ; protein_id "ENSP00000318883.5" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "BCL2L13--EP300^ENST00000317582.10" ; transcript_name "BCL2L13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C18orf25--GREB1L HAVANA gene 20000 58950 . + . FI_gene_label "GREB1L^ENSG00000141449.15" ; ID "C18orf25--GREB1L^GREB1L^ENSG00000141449.15" ; exon_id "ENSE00003694289.1" ; exon_number 3 ; gene_id "C18orf25--GREB1L^GREB1L^ENSG00000141449.15" ; gene_name GREB1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000178892.3" ; havana_transcript "OTTHUMT00000443781.2" ; hgnc_id "HGNC:31042" ; level 2 ; orig_coord_info "chr18,21383519,21383675,+" ; protein_id "ENSP00000269218.6" ; tag basic ; transcript_id "C18orf25--GREB1L^ENST00000269218.10" ; transcript_name "GREB1L-201" ; transcript_support_level 5 ; transcript_type protein_coding
C18orf25--GREB1L HAVANA mRNA 20000 58950 . + . FI_gene_label "GREB1L^ENSG00000141449.15" ; ID "C18orf25--GREB1L^ENST00000269218.10" ; Parent "C18orf25--GREB1L^GREB1L^ENSG00000141449.15" ; exon_id "ENSE00003694289.1" ; exon_number 3 ; gene_id "C18orf25--GREB1L^GREB1L^ENSG00000141449.15" ; gene_name GREB1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000178892.3" ; havana_transcript "OTTHUMT00000443781.2" ; hgnc_id "HGNC:31042" ; level 2 ; orig_coord_info "chr18,21383519,21383675,+" ; protein_id "ENSP00000269218.6" ; tag basic ; transcript_id "C18orf25--GREB1L^ENST00000269218.10" ; transcript_name "GREB1L-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
C18orf25--GREB1L HAVANA gene 1001 3286 . + . FI_gene_label "C18orf25^ENSG00000152242.11" ; ID "C18orf25--GREB1L^C18orf25^ENSG00000152242.11" ; exon_id "ENSE00002951610.1" ; exon_number 2 ; gene_id "C18orf25--GREB1L^C18orf25^ENSG00000152242.11" ; gene_name C18orf25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179190.8" ; havana_transcript "OTTHUMT00000445351.2" ; hgnc_id "HGNC:28172" ; level 2 ; orig_coord_info "chr18,46215881,46216318,+" ; protein_id "ENSP00000467826.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "C18orf25--GREB1L^ENST00000587591.5" ; transcript_name "C18orf25-201" ; transcript_support_level 4 ; transcript_type protein_coding
C18orf25--GREB1L HAVANA mRNA 1001 3286 . + . FI_gene_label "C18orf25^ENSG00000152242.11" ; ID "C18orf25--GREB1L^ENST00000587591.5" ; Parent "C18orf25--GREB1L^C18orf25^ENSG00000152242.11" ; exon_id "ENSE00002951610.1" ; exon_number 2 ; gene_id "C18orf25--GREB1L^C18orf25^ENSG00000152242.11" ; gene_name C18orf25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179190.8" ; havana_transcript "OTTHUMT00000445351.2" ; hgnc_id "HGNC:28172" ; level 2 ; orig_coord_info "chr18,46215881,46216318,+" ; protein_id "ENSP00000467826.1" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "C18orf25--GREB1L^ENST00000587591.5" ; transcript_name "C18orf25-201" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
CCDC6--RET HAVANA gene 1001 16128 . + . FI_gene_label "CCDC6^ENSG00000108091.11" ; ID "CCDC6--RET^CCDC6^ENSG00000108091.11" ; ccdsid "CCDS7257.1" ; exon_id "ENSE00001950758.3" ; exon_number 1 ; gene_id "CCDC6--RET^CCDC6^ENSG00000108091.11" ; gene_name CCDC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018284.3" ; havana_transcript "OTTHUMT00000048176.3" ; hgnc_id "HGNC:18782" ; level 2 ; orig_coord_info "chr10,59906122,59906424,-" ; protein_id "ENSP00000263102.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CCDC6--RET^ENST00000263102.7" ; transcript_name "CCDC6-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCDC6--RET HAVANA mRNA 1001 16128 . + . FI_gene_label "CCDC6^ENSG00000108091.11" ; ID "CCDC6--RET^ENST00000263102.7" ; Parent "CCDC6--RET^CCDC6^ENSG00000108091.11" ; ccdsid "CCDS7257.1" ; exon_id "ENSE00001950758.3" ; exon_number 1 ; gene_id "CCDC6--RET^CCDC6^ENSG00000108091.11" ; gene_name CCDC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018284.3" ; havana_transcript "OTTHUMT00000048176.3" ; hgnc_id "HGNC:18782" ; level 2 ; orig_coord_info "chr10,59906122,59906424,-" ; protein_id "ENSP00000263102.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CCDC6--RET^ENST00000263102.7" ; transcript_name "CCDC6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCDC6--RET HAVANA gene 19134 39754 . + . FI_gene_label "RET^ENSG00000165731.20" ; ID "CCDC6--RET^RET^ENSG00000165731.20" ; ccdsid "CCDS53525.1" ; exon_id "ENSE00003744437.1" ; exon_number 1 ; gene_id "CCDC6--RET^RET^ENSG00000165731.20" ; gene_name RET ; gene_type protein_coding ; havana_gene "OTTHUMG00000018024.7" ; havana_transcript "OTTHUMT00000358138.3" ; hgnc_id "HGNC:9967" ; level 2 ; orig_coord_info "chr10,43077259,43077331,+" ; protein_id "ENSP00000344798.4" ; tag basic CCDS ; transcript_id "CCDC6--RET^ENST00000340058.6" ; transcript_name "RET-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCDC6--RET HAVANA mRNA 19134 39754 . + . FI_gene_label "RET^ENSG00000165731.20" ; ID "CCDC6--RET^ENST00000340058.6" ; Parent "CCDC6--RET^RET^ENSG00000165731.20" ; ccdsid "CCDS53525.1" ; exon_id "ENSE00003744437.1" ; exon_number 1 ; gene_id "CCDC6--RET^RET^ENSG00000165731.20" ; gene_name RET ; gene_type protein_coding ; havana_gene "OTTHUMG00000018024.7" ; havana_transcript "OTTHUMT00000358138.3" ; hgnc_id "HGNC:9967" ; level 2 ; orig_coord_info "chr10,43077259,43077331,+" ; protein_id "ENSP00000344798.4" ; tag basic CCDS ; transcript_id "CCDC6--RET^ENST00000340058.6" ; transcript_name "RET-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCNJL--FABP6 HAVANA gene 6273 23529 . + . FI_gene_label "CCNJL^ENSG00000135083.16" ; ID "CCNJL--FABP6^CCNJL^ENSG00000135083.16" ; ccdsid "CCDS78082.1" ; exon_id "ENSE00003632363.1" ; exon_number 2 ; gene_id "CCNJL--FABP6^CCNJL^ENSG00000135083.16" ; gene_name CCNJL ; gene_type protein_coding ; havana_gene "OTTHUMG00000130325.6" ; havana_transcript "OTTHUMT00000374062.2" ; hgnc_id "HGNC:25876" ; level 2 ; orig_coord_info "chr5,160311858,160311923,-" ; protein_id "ENSP00000257536.7" ; tag RNA_Seq_supported_partial basic MANE_Select appris_principal_1 CCDS ; transcript_id "CCNJL--FABP6^ENST00000257536.13" ; transcript_name "CCNJL-201" ; transcript_support_level 2 ; transcript_type protein_coding
CCNJL--FABP6 HAVANA mRNA 6273 23529 . + . FI_gene_label "CCNJL^ENSG00000135083.16" ; ID "CCNJL--FABP6^ENST00000257536.13" ; Parent "CCNJL--FABP6^CCNJL^ENSG00000135083.16" ; ccdsid "CCDS78082.1" ; exon_id "ENSE00003632363.1" ; exon_number 2 ; gene_id "CCNJL--FABP6^CCNJL^ENSG00000135083.16" ; gene_name CCNJL ; gene_type protein_coding ; havana_gene "OTTHUMG00000130325.6" ; havana_transcript "OTTHUMT00000374062.2" ; hgnc_id "HGNC:25876" ; level 2 ; orig_coord_info "chr5,160311858,160311923,-" ; protein_id "ENSP00000257536.7" ; tag RNA_Seq_supported_partial basic MANE_Select appris_principal_1 CCDS ; transcript_id "CCNJL--FABP6^ENST00000257536.13" ; transcript_name "CCNJL-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CCNJL--FABP6 HAVANA gene 26530 34430 . + . FI_gene_label "FABP6^ENSG00000170231.16" ; ID "CCNJL--FABP6^FABP6^ENSG00000170231.16" ; ccdsid "CCDS43393.1" ; exon_id "ENSE00002206326.1" ; exon_number 2 ; gene_id "CCNJL--FABP6^FABP6^ENSG00000170231.16" ; gene_name FABP6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130329.6" ; havana_transcript "OTTHUMT00000252678.4" ; hgnc_id "HGNC:3561" ; level 2 ; orig_coord_info "chr5,160199107,160199157,+" ; protein_id "ENSP00000377549.4" ; tag basic CCDS ; transcript_id "CCNJL--FABP6^ENST00000393980.8" ; transcript_name "FABP6-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCNJL--FABP6 HAVANA mRNA 26530 34430 . + . FI_gene_label "FABP6^ENSG00000170231.16" ; ID "CCNJL--FABP6^ENST00000393980.8" ; Parent "CCNJL--FABP6^FABP6^ENSG00000170231.16" ; ccdsid "CCDS43393.1" ; exon_id "ENSE00002206326.1" ; exon_number 2 ; gene_id "CCNJL--FABP6^FABP6^ENSG00000170231.16" ; gene_name FABP6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130329.6" ; havana_transcript "OTTHUMT00000252678.4" ; hgnc_id "HGNC:3561" ; level 2 ; orig_coord_info "chr5,160199107,160199157,+" ; protein_id "ENSP00000377549.4" ; tag basic CCDS ; transcript_id "CCNJL--FABP6^ENST00000393980.8" ; transcript_name "FABP6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CENPM--PACSIN2 HAVANA gene 1001 6807 . + . FI_gene_label "CENPM^ENSG00000100162.15" ; ID "CENPM--PACSIN2^CENPM^ENSG00000100162.15" ; ccdsid "CCDS14025.1" ; exon_id "ENSE00001931122.2" ; exon_number 1 ; gene_id "CENPM--PACSIN2^CENPM^ENSG00000100162.15" ; gene_name CENPM ; gene_type protein_coding ; havana_gene "OTTHUMG00000151277.3" ; havana_transcript "OTTHUMT00000322058.2" ; hgnc_id "HGNC:18352" ; level 2 ; orig_coord_info "chr22,41947020,41947076,-" ; protein_id "ENSP00000215980.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CENPM--PACSIN2^ENST00000215980.10" ; transcript_name "CENPM-201" ; transcript_support_level 1 ; transcript_type protein_coding
CENPM--PACSIN2 HAVANA mRNA 1001 6807 . + . FI_gene_label "CENPM^ENSG00000100162.15" ; ID "CENPM--PACSIN2^ENST00000215980.10" ; Parent "CENPM--PACSIN2^CENPM^ENSG00000100162.15" ; ccdsid "CCDS14025.1" ; exon_id "ENSE00001931122.2" ; exon_number 1 ; gene_id "CENPM--PACSIN2^CENPM^ENSG00000100162.15" ; gene_name CENPM ; gene_type protein_coding ; havana_gene "OTTHUMG00000151277.3" ; havana_transcript "OTTHUMT00000322058.2" ; hgnc_id "HGNC:18352" ; level 2 ; orig_coord_info "chr22,41947020,41947076,-" ; protein_id "ENSP00000215980.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CENPM--PACSIN2^ENST00000215980.10" ; transcript_name "CENPM-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CENPM--PACSIN2 HAVANA gene 9808 30623 . + . FI_gene_label "PACSIN2^ENSG00000100266.19" ; ID "CENPM--PACSIN2^PACSIN2^ENSG00000100266.19" ; ccdsid "CCDS43023.1" ; exon_id "ENSE00003785686.1" ; exon_number 2 ; gene_id "CENPM--PACSIN2^PACSIN2^ENSG00000100266.19" ; gene_name PACSIN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150701.8" ; havana_transcript "OTTHUMT00000319665.2" ; hgnc_id "HGNC:8571" ; level 2 ; orig_coord_info "chr22,42912021,42912080,-" ; protein_id "ENSP00000263246.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CENPM--PACSIN2^ENST00000263246.8" ; transcript_name "PACSIN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CENPM--PACSIN2 HAVANA mRNA 9808 30623 . + . FI_gene_label "PACSIN2^ENSG00000100266.19" ; ID "CENPM--PACSIN2^ENST00000263246.8" ; Parent "CENPM--PACSIN2^PACSIN2^ENSG00000100266.19" ; ccdsid "CCDS43023.1" ; exon_id "ENSE00003785686.1" ; exon_number 2 ; gene_id "CENPM--PACSIN2^PACSIN2^ENSG00000100266.19" ; gene_name PACSIN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150701.8" ; havana_transcript "OTTHUMT00000319665.2" ; hgnc_id "HGNC:8571" ; level 2 ; orig_coord_info "chr22,42912021,42912080,-" ; protein_id "ENSP00000263246.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CENPM--PACSIN2^ENST00000263246.8" ; transcript_name "PACSIN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CHMP1A--FANCA HAVANA gene 16357 56104 . + . FI_gene_label "FANCA^ENSG00000187741.15" ; ID "CHMP1A--FANCA^FANCA^ENSG00000187741.15" ; ccdsid "CCDS32515.1" ; exon_id "ENSE00003850983.1" ; exon_number 1 ; gene_id "CHMP1A--FANCA^FANCA^ENSG00000187741.15" ; gene_name FANCA ; gene_type protein_coding ; havana_gene "OTTHUMG00000173049.7" ; havana_transcript "OTTHUMT00000421927.2" ; hgnc_id "HGNC:3582" ; level 2 ; orig_coord_info "chr16,89816537,89816615,-" ; protein_id "ENSP00000373952.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "CHMP1A--FANCA^ENST00000389301.8" ; transcript_name "FANCA-202" ; transcript_support_level 1 ; transcript_type protein_coding
CHMP1A--FANCA HAVANA mRNA 16357 56104 . + . FI_gene_label "FANCA^ENSG00000187741.15" ; ID "CHMP1A--FANCA^ENST00000389301.8" ; Parent "CHMP1A--FANCA^FANCA^ENSG00000187741.15" ; ccdsid "CCDS32515.1" ; exon_id "ENSE00003850983.1" ; exon_number 1 ; gene_id "CHMP1A--FANCA^FANCA^ENSG00000187741.15" ; gene_name FANCA ; gene_type protein_coding ; havana_gene "OTTHUMG00000173049.7" ; havana_transcript "OTTHUMT00000421927.2" ; hgnc_id "HGNC:3582" ; level 2 ; orig_coord_info "chr16,89816537,89816615,-" ; protein_id "ENSP00000373952.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "CHMP1A--FANCA^ENST00000389301.8" ; transcript_name "FANCA-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CHMP1A--FANCA HAVANA gene 1031 11488 . + . FI_gene_label "CHMP1A^ENSG00000131165.16" ; ID "CHMP1A--FANCA^CHMP1A^ENSG00000131165.16" ; ccdsid "CCDS45552.1" ; exon_id "ENSE00002339458.2" ; exon_number 1 ; gene_id "CHMP1A--FANCA^CHMP1A^ENSG00000131165.16" ; gene_name CHMP1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000169521.2" ; havana_transcript "OTTHUMT00000404581.2" ; hgnc_id "HGNC:8740" ; level 2 ; orig_coord_info "chr16,89657582,89657588,-" ; protein_id "ENSP00000380998.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CHMP1A--FANCA^ENST00000397901.8" ; transcript_name "CHMP1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
CHMP1A--FANCA HAVANA mRNA 1031 11488 . + . FI_gene_label "CHMP1A^ENSG00000131165.16" ; ID "CHMP1A--FANCA^ENST00000397901.8" ; Parent "CHMP1A--FANCA^CHMP1A^ENSG00000131165.16" ; ccdsid "CCDS45552.1" ; exon_id "ENSE00002339458.2" ; exon_number 1 ; gene_id "CHMP1A--FANCA^CHMP1A^ENSG00000131165.16" ; gene_name CHMP1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000169521.2" ; havana_transcript "OTTHUMT00000404581.2" ; hgnc_id "HGNC:8740" ; level 2 ; orig_coord_info "chr16,89657582,89657588,-" ; protein_id "ENSP00000380998.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CHMP1A--FANCA^ENST00000397901.8" ; transcript_name "CHMP1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CMIP--AP001970.1 HAVANA gene 9185 36763 . + . FI_gene_label "CMIP^ENSG00000153815.17" ; ID "CMIP--AP001970.1^CMIP^ENSG00000153815.17" ; exon_id "ENSE00002595737.1" ; exon_number 1 ; gene_id "CMIP--AP001970.1^CMIP^ENSG00000153815.17" ; gene_name CMIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000176520.4" ; havana_transcript "OTTHUMT00000432404.1" ; hgnc_id "HGNC:24319" ; level 2 ; orig_coord_info "chr16,81645581,81645598,+" ; protein_id "ENSP00000381120.4" ; tag upstream_ATG basic ; transcript_id "CMIP--AP001970.1^ENST00000398040.8" ; transcript_name "CMIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
CMIP--AP001970.1 HAVANA mRNA 9185 36763 . + . FI_gene_label "CMIP^ENSG00000153815.17" ; ID "CMIP--AP001970.1^ENST00000398040.8" ; Parent "CMIP--AP001970.1^CMIP^ENSG00000153815.17" ; exon_id "ENSE00002595737.1" ; exon_number 1 ; gene_id "CMIP--AP001970.1^CMIP^ENSG00000153815.17" ; gene_name CMIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000176520.4" ; havana_transcript "OTTHUMT00000432404.1" ; hgnc_id "HGNC:24319" ; level 2 ; orig_coord_info "chr16,81645581,81645598,+" ; protein_id "ENSP00000381120.4" ; tag upstream_ATG basic ; transcript_id "CMIP--AP001970.1^ENST00000398040.8" ; transcript_name "CMIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CMIP--U8 HAVANA gene 9185 36763 . + . FI_gene_label "CMIP^ENSG00000153815.17" ; ID "CMIP--U8^CMIP^ENSG00000153815.17" ; exon_id "ENSE00002595737.1" ; exon_number 1 ; gene_id "CMIP--U8^CMIP^ENSG00000153815.17" ; gene_name CMIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000176520.4" ; havana_transcript "OTTHUMT00000432404.1" ; hgnc_id "HGNC:24319" ; level 2 ; orig_coord_info "chr16,81645581,81645598,+" ; protein_id "ENSP00000381120.4" ; tag upstream_ATG basic ; transcript_id "CMIP--U8^ENST00000398040.8" ; transcript_name "CMIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
CMIP--U8 HAVANA mRNA 9185 36763 . + . FI_gene_label "CMIP^ENSG00000153815.17" ; ID "CMIP--U8^ENST00000398040.8" ; Parent "CMIP--U8^CMIP^ENSG00000153815.17" ; exon_id "ENSE00002595737.1" ; exon_number 1 ; gene_id "CMIP--U8^CMIP^ENSG00000153815.17" ; gene_name CMIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000176520.4" ; havana_transcript "OTTHUMT00000432404.1" ; hgnc_id "HGNC:24319" ; level 2 ; orig_coord_info "chr16,81645581,81645598,+" ; protein_id "ENSP00000381120.4" ; tag upstream_ATG basic ; transcript_id "CMIP--U8^ENST00000398040.8" ; transcript_name "CMIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DDX1--AC068286.1 HAVANA gene 1691 24999 . + . FI_gene_label "DDX1^ENSG00000079785.16" ; ID "DDX1--AC068286.1^DDX1^ENSG00000079785.16" ; ccdsid "CCDS1686.1" ; exon_id "ENSE00001345863.3" ; exon_number 1 ; gene_id "DDX1--AC068286.1^DDX1^ENSG00000079785.16" ; gene_name DDX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090593.6" ; havana_transcript "OTTHUMT00000504323.2" ; hgnc_id "HGNC:2734" ; level 2 ; orig_coord_info "chr2,15591934,15591949,+" ; protein_id "ENSP00000233084.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDX1--AC068286.1^ENST00000233084.8" ; transcript_name "DDX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
DDX1--AC068286.1 HAVANA mRNA 1691 24999 . + . FI_gene_label "DDX1^ENSG00000079785.16" ; ID "DDX1--AC068286.1^ENST00000233084.8" ; Parent "DDX1--AC068286.1^DDX1^ENSG00000079785.16" ; ccdsid "CCDS1686.1" ; exon_id "ENSE00001345863.3" ; exon_number 1 ; gene_id "DDX1--AC068286.1^DDX1^ENSG00000079785.16" ; gene_name DDX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090593.6" ; havana_transcript "OTTHUMT00000504323.2" ; hgnc_id "HGNC:2734" ; level 2 ; orig_coord_info "chr2,15591934,15591949,+" ; protein_id "ENSP00000233084.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDX1--AC068286.1^ENST00000233084.8" ; transcript_name "DDX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EFNA5--IKBKB HAVANA gene 1001 11841 . + . FI_gene_label "EFNA5^ENSG00000184349.14" ; ID "EFNA5--IKBKB^EFNA5^ENSG00000184349.14" ; ccdsid "CCDS4097.1" ; exon_id "ENSE00001300960.3" ; exon_number 1 ; gene_id "EFNA5--IKBKB^EFNA5^ENSG00000184349.14" ; gene_name EFNA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128741.4" ; havana_transcript "OTTHUMT00000250652.2" ; hgnc_id "HGNC:3225" ; level 2 ; orig_coord_info "chr5,107670489,107670613,-" ; protein_id "ENSP00000328777.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "EFNA5--IKBKB^ENST00000333274.11" ; transcript_name "EFNA5-201" ; transcript_support_level 1 ; transcript_type protein_coding
EFNA5--IKBKB HAVANA mRNA 1001 11841 . + . FI_gene_label "EFNA5^ENSG00000184349.14" ; ID "EFNA5--IKBKB^ENST00000333274.11" ; Parent "EFNA5--IKBKB^EFNA5^ENSG00000184349.14" ; ccdsid "CCDS4097.1" ; exon_id "ENSE00001300960.3" ; exon_number 1 ; gene_id "EFNA5--IKBKB^EFNA5^ENSG00000184349.14" ; gene_name EFNA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128741.4" ; havana_transcript "OTTHUMT00000250652.2" ; hgnc_id "HGNC:3225" ; level 2 ; orig_coord_info "chr5,107670489,107670613,-" ; protein_id "ENSP00000328777.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "EFNA5--IKBKB^ENST00000333274.11" ; transcript_name "EFNA5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EFNA5--IKBKB HAVANA gene 14874 38544 . + . FI_gene_label "IKBKB^ENSG00000104365.16" ; ID "EFNA5--IKBKB^IKBKB^ENSG00000104365.16" ; exon_id "ENSE00003522256.1" ; exon_number 2 ; gene_id "EFNA5--IKBKB^IKBKB^ENSG00000104365.16" ; gene_name IKBKB ; gene_type protein_coding ; havana_gene "OTTHUMG00000164092.8" ; havana_transcript "OTTHUMT00000377223.1" ; hgnc_id "HGNC:5960" ; level 2 ; orig_coord_info "chr8,42272101,42272205,+" ; protein_id "ENSP00000339151.2" ; transcript_id "EFNA5--IKBKB^ENST00000342222.6" ; transcript_name "IKBKB-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
EFNA5--IKBKB HAVANA mRNA 14874 38544 . + . FI_gene_label "IKBKB^ENSG00000104365.16" ; ID "EFNA5--IKBKB^ENST00000342222.6" ; Parent "EFNA5--IKBKB^IKBKB^ENSG00000104365.16" ; exon_id "ENSE00003522256.1" ; exon_number 2 ; gene_id "EFNA5--IKBKB^IKBKB^ENSG00000104365.16" ; gene_name IKBKB ; gene_type protein_coding ; havana_gene "OTTHUMG00000164092.8" ; havana_transcript "OTTHUMT00000377223.1" ; hgnc_id "HGNC:5960" ; level 2 ; orig_coord_info "chr8,42272101,42272205,+" ; protein_id "ENSP00000339151.2" ; transcript_id "EFNA5--IKBKB^ENST00000342222.6" ; transcript_name "IKBKB-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
FANCA--CDK10 HAVANA gene 43759 55766 . + . FI_gene_label "CDK10^ENSG00000185324.22" ; ID "FANCA--CDK10^CDK10^ENSG00000185324.22" ; exon_id "ENSE00002275136.1" ; exon_number 1 ; gene_id "FANCA--CDK10^CDK10^ENSG00000185324.22" ; gene_name CDK10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000138049.5" ; havana_transcript "OTTHUMT00000423068.1" ; hgnc_id "HGNC:1770" ; level 1 ; orig_coord_info "chr16,89682478,89682496,+" ; protein_id "ENSP00000329957.8" ; tag basic exp_conf ; transcript_id "FANCA--CDK10^ENST00000331006.12" ; transcript_name "CDK10-201" ; transcript_support_level 2 ; transcript_type protein_coding
FANCA--CDK10 HAVANA mRNA 43759 55766 . + . FI_gene_label "CDK10^ENSG00000185324.22" ; ID "FANCA--CDK10^ENST00000331006.12" ; Parent "FANCA--CDK10^CDK10^ENSG00000185324.22" ; exon_id "ENSE00002275136.1" ; exon_number 1 ; gene_id "FANCA--CDK10^CDK10^ENSG00000185324.22" ; gene_name CDK10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000138049.5" ; havana_transcript "OTTHUMT00000423068.1" ; hgnc_id "HGNC:1770" ; level 1 ; orig_coord_info "chr16,89682478,89682496,+" ; protein_id "ENSP00000329957.8" ; tag basic exp_conf ; transcript_id "FANCA--CDK10^ENST00000331006.12" ; transcript_name "CDK10-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
FANCA--CDK10 HAVANA gene 1011 40758 . + . FI_gene_label "FANCA^ENSG00000187741.15" ; ID "FANCA--CDK10^FANCA^ENSG00000187741.15" ; ccdsid "CCDS32515.1" ; exon_id "ENSE00003850983.1" ; exon_number 1 ; gene_id "FANCA--CDK10^FANCA^ENSG00000187741.15" ; gene_name FANCA ; gene_type protein_coding ; havana_gene "OTTHUMG00000173049.7" ; havana_transcript "OTTHUMT00000421927.2" ; hgnc_id "HGNC:3582" ; level 2 ; orig_coord_info "chr16,89816537,89816615,-" ; protein_id "ENSP00000373952.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "FANCA--CDK10^ENST00000389301.8" ; transcript_name "FANCA-202" ; transcript_support_level 1 ; transcript_type protein_coding
FANCA--CDK10 HAVANA mRNA 1011 40758 . + . FI_gene_label "FANCA^ENSG00000187741.15" ; ID "FANCA--CDK10^ENST00000389301.8" ; Parent "FANCA--CDK10^FANCA^ENSG00000187741.15" ; ccdsid "CCDS32515.1" ; exon_id "ENSE00003850983.1" ; exon_number 1 ; gene_id "FANCA--CDK10^FANCA^ENSG00000187741.15" ; gene_name FANCA ; gene_type protein_coding ; havana_gene "OTTHUMG00000173049.7" ; havana_transcript "OTTHUMT00000421927.2" ; hgnc_id "HGNC:3582" ; level 2 ; orig_coord_info "chr16,89816537,89816615,-" ; protein_id "ENSP00000373952.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "FANCA--CDK10^ENST00000389301.8" ; transcript_name "FANCA-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HERC2--AC018362.1 HAVANA gene 1001 86848 . + . FI_gene_label "HERC2^ENSG00000128731.18" ; ID "HERC2--AC018362.1^HERC2^ENSG00000128731.18" ; ccdsid "CCDS10021.1" ; exon_id "ENSE00003655270.1" ; exon_number 2 ; gene_id "HERC2--AC018362.1^HERC2^ENSG00000128731.18" ; gene_name HERC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129251.7" ; havana_transcript "OTTHUMT00000251358.3" ; hgnc_id "HGNC:4868" ; level 2 ; orig_coord_info "chr15,28321362,28321433,-" ; protein_id "ENSP00000261609.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HERC2--AC018362.1^ENST00000261609.13" ; transcript_name "HERC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
HERC2--AC018362.1 HAVANA mRNA 1001 86848 . + . FI_gene_label "HERC2^ENSG00000128731.18" ; ID "HERC2--AC018362.1^ENST00000261609.13" ; Parent "HERC2--AC018362.1^HERC2^ENSG00000128731.18" ; ccdsid "CCDS10021.1" ; exon_id "ENSE00003655270.1" ; exon_number 2 ; gene_id "HERC2--AC018362.1^HERC2^ENSG00000128731.18" ; gene_name HERC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129251.7" ; havana_transcript "OTTHUMT00000251358.3" ; hgnc_id "HGNC:4868" ; level 2 ; orig_coord_info "chr15,28321362,28321433,-" ; protein_id "ENSP00000261609.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HERC2--AC018362.1^ENST00000261609.13" ; transcript_name "HERC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HERC2--SNAP23 HAVANA gene 92719 105068 . + . FI_gene_label "SNAP23^ENSG00000092531.10" ; ID "HERC2--SNAP23^SNAP23^ENSG00000092531.10" ; ccdsid "CCDS10087.1" ; exon_id "ENSE00003547573.1" ; exon_number 2 ; gene_id "HERC2--SNAP23^SNAP23^ENSG00000092531.10" ; gene_name SNAP23 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130625.7" ; havana_transcript "OTTHUMT00000253111.5" ; hgnc_id "HGNC:11131" ; level 2 ; orig_coord_info "chr15,42511847,42511903,+" ; protein_id "ENSP00000249647.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HERC2--SNAP23^ENST00000249647.8" ; transcript_name "SNAP23-201" ; transcript_support_level 1 ; transcript_type protein_coding
HERC2--SNAP23 HAVANA mRNA 92719 105068 . + . FI_gene_label "SNAP23^ENSG00000092531.10" ; ID "HERC2--SNAP23^ENST00000249647.8" ; Parent "HERC2--SNAP23^SNAP23^ENSG00000092531.10" ; ccdsid "CCDS10087.1" ; exon_id "ENSE00003547573.1" ; exon_number 2 ; gene_id "HERC2--SNAP23^SNAP23^ENSG00000092531.10" ; gene_name SNAP23 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130625.7" ; havana_transcript "OTTHUMT00000253111.5" ; hgnc_id "HGNC:11131" ; level 2 ; orig_coord_info "chr15,42511847,42511903,+" ; protein_id "ENSP00000249647.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HERC2--SNAP23^ENST00000249647.8" ; transcript_name "SNAP23-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HERC2--SNAP23 HAVANA gene 1001 86848 . + . FI_gene_label "HERC2^ENSG00000128731.18" ; ID "HERC2--SNAP23^HERC2^ENSG00000128731.18" ; ccdsid "CCDS10021.1" ; exon_id "ENSE00003655270.1" ; exon_number 2 ; gene_id "HERC2--SNAP23^HERC2^ENSG00000128731.18" ; gene_name HERC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129251.7" ; havana_transcript "OTTHUMT00000251358.3" ; hgnc_id "HGNC:4868" ; level 2 ; orig_coord_info "chr15,28321362,28321433,-" ; protein_id "ENSP00000261609.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HERC2--SNAP23^ENST00000261609.13" ; transcript_name "HERC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
HERC2--SNAP23 HAVANA mRNA 1001 86848 . + . FI_gene_label "HERC2^ENSG00000128731.18" ; ID "HERC2--SNAP23^ENST00000261609.13" ; Parent "HERC2--SNAP23^HERC2^ENSG00000128731.18" ; ccdsid "CCDS10021.1" ; exon_id "ENSE00003655270.1" ; exon_number 2 ; gene_id "HERC2--SNAP23^HERC2^ENSG00000128731.18" ; gene_name HERC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129251.7" ; havana_transcript "OTTHUMT00000251358.3" ; hgnc_id "HGNC:4868" ; level 2 ; orig_coord_info "chr15,28321362,28321433,-" ; protein_id "ENSP00000261609.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HERC2--SNAP23^ENST00000261609.13" ; transcript_name "HERC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HNRNPM--TIMM29 HAVANA gene 22514 23957 . + . FI_gene_label "TIMM29^ENSG00000142444.7" ; ID "HNRNPM--TIMM29^TIMM29^ENSG00000142444.7" ; ccdsid "CCDS12252.1" ; exon_id "ENSE00000954157.10" ; exon_number 1 ; gene_id "HNRNPM--TIMM29^TIMM29^ENSG00000142444.7" ; gene_name TIMM29 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180700.2" ; havana_transcript "OTTHUMT00000452635.2" ; hgnc_id "HGNC:25152" ; level 2 ; orig_coord_info "chr19,10928823,10928916,+" ; protein_id "ENSP00000270502.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HNRNPM--TIMM29^ENST00000270502.7" ; transcript_name "TIMM29-201" ; transcript_support_level 1 ; transcript_type protein_coding
HNRNPM--TIMM29 HAVANA mRNA 22514 23957 . + . FI_gene_label "TIMM29^ENSG00000142444.7" ; ID "HNRNPM--TIMM29^ENST00000270502.7" ; Parent "HNRNPM--TIMM29^TIMM29^ENSG00000142444.7" ; ccdsid "CCDS12252.1" ; exon_id "ENSE00000954157.10" ; exon_number 1 ; gene_id "HNRNPM--TIMM29^TIMM29^ENSG00000142444.7" ; gene_name TIMM29 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180700.2" ; havana_transcript "OTTHUMT00000452635.2" ; hgnc_id "HGNC:25152" ; level 2 ; orig_coord_info "chr19,10928823,10928916,+" ; protein_id "ENSP00000270502.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HNRNPM--TIMM29^ENST00000270502.7" ; transcript_name "TIMM29-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HNRNPM--TIMM29 HAVANA gene 1209 19513 . + . FI_gene_label "HNRNPM^ENSG00000099783.12" ; ID "HNRNPM--TIMM29^HNRNPM^ENSG00000099783.12" ; ccdsid "CCDS12203.1" ; exon_id "ENSE00003153491.2" ; exon_number 1 ; gene_id "HNRNPM--TIMM29^HNRNPM^ENSG00000099783.12" ; gene_name HNRNPM ; gene_type protein_coding ; havana_gene "OTTHUMG00000182383.7" ; havana_transcript "OTTHUMT00000460894.2" ; hgnc_id "HGNC:5046" ; level 2 ; orig_coord_info "chr19,8444999,8445111,+" ; protein_id "ENSP00000325376.2" ; tag retained_intron_CDS basic MANE_Select appris_principal_4 CCDS ; transcript_id "HNRNPM--TIMM29^ENST00000325495.9" ; transcript_name "HNRNPM-201" ; transcript_support_level 1 ; transcript_type protein_coding
HNRNPM--TIMM29 HAVANA mRNA 1209 19513 . + . FI_gene_label "HNRNPM^ENSG00000099783.12" ; ID "HNRNPM--TIMM29^ENST00000325495.9" ; Parent "HNRNPM--TIMM29^HNRNPM^ENSG00000099783.12" ; ccdsid "CCDS12203.1" ; exon_id "ENSE00003153491.2" ; exon_number 1 ; gene_id "HNRNPM--TIMM29^HNRNPM^ENSG00000099783.12" ; gene_name HNRNPM ; gene_type protein_coding ; havana_gene "OTTHUMG00000182383.7" ; havana_transcript "OTTHUMT00000460894.2" ; hgnc_id "HGNC:5046" ; level 2 ; orig_coord_info "chr19,8444999,8445111,+" ; protein_id "ENSP00000325376.2" ; tag retained_intron_CDS basic MANE_Select appris_principal_4 CCDS ; transcript_id "HNRNPM--TIMM29^ENST00000325495.9" ; transcript_name "HNRNPM-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KDM4B--CYP4F22 HAVANA gene 1001 37721 . + . FI_gene_label "KDM4B^ENSG00000127663.15" ; ID "KDM4B--CYP4F22^KDM4B^ENSG00000127663.15" ; ccdsid "CCDS12138.1" ; exon_id "ENSE00000874797.2" ; exon_number 3 ; gene_id "KDM4B--CYP4F22^KDM4B^ENSG00000127663.15" ; gene_name KDM4B ; gene_type protein_coding ; havana_gene "OTTHUMG00000180281.5" ; havana_transcript "OTTHUMT00000450558.3" ; hgnc_id "HGNC:29136" ; level 2 ; orig_coord_info "chr19,5032891,5033031,+" ; protein_id "ENSP00000159111.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "KDM4B--CYP4F22^ENST00000159111.9" ; transcript_name "KDM4B-201" ; transcript_support_level 1 ; transcript_type protein_coding
KDM4B--CYP4F22 HAVANA mRNA 1001 37721 . + . FI_gene_label "KDM4B^ENSG00000127663.15" ; ID "KDM4B--CYP4F22^ENST00000159111.9" ; Parent "KDM4B--CYP4F22^KDM4B^ENSG00000127663.15" ; ccdsid "CCDS12138.1" ; exon_id "ENSE00000874797.2" ; exon_number 3 ; gene_id "KDM4B--CYP4F22^KDM4B^ENSG00000127663.15" ; gene_name KDM4B ; gene_type protein_coding ; havana_gene "OTTHUMG00000180281.5" ; havana_transcript "OTTHUMT00000450558.3" ; hgnc_id "HGNC:29136" ; level 2 ; orig_coord_info "chr19,5032891,5033031,+" ; protein_id "ENSP00000159111.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "KDM4B--CYP4F22^ENST00000159111.9" ; transcript_name "KDM4B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KDM4B--CYP4F22 HAVANA gene 40722 53207 . + . FI_gene_label "CYP4F22^ENSG00000171954.13" ; ID "KDM4B--CYP4F22^CYP4F22^ENSG00000171954.13" ; ccdsid "CCDS12331.1" ; exon_id "ENSE00003216302.1" ; exon_number 3 ; gene_id "KDM4B--CYP4F22^CYP4F22^ENSG00000171954.13" ; gene_name CYP4F22 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182451.3" ; havana_transcript "OTTHUMT00000461338.3" ; hgnc_id "HGNC:26820" ; level 2 ; orig_coord_info "chr19,15525337,15525558,+" ; protein_id "ENSP00000269703.1" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "KDM4B--CYP4F22^ENST00000269703.8" ; transcript_name "CYP4F22-201" ; transcript_support_level 2 ; transcript_type protein_coding
KDM4B--CYP4F22 HAVANA mRNA 40722 53207 . + . FI_gene_label "CYP4F22^ENSG00000171954.13" ; ID "KDM4B--CYP4F22^ENST00000269703.8" ; Parent "KDM4B--CYP4F22^CYP4F22^ENSG00000171954.13" ; ccdsid "CCDS12331.1" ; exon_id "ENSE00003216302.1" ; exon_number 3 ; gene_id "KDM4B--CYP4F22^CYP4F22^ENSG00000171954.13" ; gene_name CYP4F22 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182451.3" ; havana_transcript "OTTHUMT00000461338.3" ; hgnc_id "HGNC:26820" ; level 2 ; orig_coord_info "chr19,15525337,15525558,+" ; protein_id "ENSP00000269703.1" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "KDM4B--CYP4F22^ENST00000269703.8" ; transcript_name "CYP4F22-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^ENST00000240618.11" ; Parent "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^ENST00000309384.2" ; Parent "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MGA--GABRB3 ENSEMBL gene 2367 37518 . + . FI_gene_label "MGA^ENSG00000174197.16" ; ID "MGA--GABRB3^MGA^ENSG00000174197.16" ; ccdsid "CCDS55959.1" ; exon_id "ENSE00001762919.1" ; exon_number 2 ; gene_id "MGA--GABRB3^MGA^ENSG00000174197.16" ; gene_name MGA ; gene_type protein_coding ; havana_gene "OTTHUMG00000172719.3" ; hgnc_id "HGNC:14010" ; level 3 ; orig_coord_info "chr15,41668895,41669958,+" ; protein_id "ENSP00000219905.7" ; tag basic appris_principal_4 CCDS ; transcript_id "MGA--GABRB3^ENST00000219905.11" ; transcript_name "MGA-201" ; transcript_support_level 5 ; transcript_type protein_coding
MGA--GABRB3 ENSEMBL mRNA 2367 37518 . + . FI_gene_label "MGA^ENSG00000174197.16" ; ID "MGA--GABRB3^ENST00000219905.11" ; Parent "MGA--GABRB3^MGA^ENSG00000174197.16" ; ccdsid "CCDS55959.1" ; exon_id "ENSE00001762919.1" ; exon_number 2 ; gene_id "MGA--GABRB3^MGA^ENSG00000174197.16" ; gene_name MGA ; gene_type protein_coding ; havana_gene "OTTHUMG00000172719.3" ; hgnc_id "HGNC:14010" ; level 3 ; orig_coord_info "chr15,41668895,41669958,+" ; protein_id "ENSP00000219905.7" ; tag basic appris_principal_4 CCDS ; transcript_id "MGA--GABRB3^ENST00000219905.11" ; transcript_name "MGA-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MGA--GABRB3 HAVANA gene 49823 81568 . + . FI_gene_label "GABRB3^ENSG00000166206.15" ; ID "MGA--GABRB3^GABRB3^ENSG00000166206.15" ; ccdsid "CCDS10018.1" ; exon_id "ENSE00001238881.5" ; exon_number 1 ; gene_id "MGA--GABRB3^GABRB3^ENSG00000166206.15" ; gene_name GABRB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129231.10" ; havana_transcript "OTTHUMT00000251329.5" ; hgnc_id "HGNC:4083" ; level 2 ; orig_coord_info "chr15,26773645,26773724,-" ; protein_id "ENSP00000299267.4" ; tag basic CCDS ; transcript_id "MGA--GABRB3^ENST00000299267.8" ; transcript_name "GABRB3-201" ; transcript_support_level 1 ; transcript_type protein_coding
MGA--GABRB3 HAVANA mRNA 49823 81568 . + . FI_gene_label "GABRB3^ENSG00000166206.15" ; ID "MGA--GABRB3^ENST00000299267.8" ; Parent "MGA--GABRB3^GABRB3^ENSG00000166206.15" ; ccdsid "CCDS10018.1" ; exon_id "ENSE00001238881.5" ; exon_number 1 ; gene_id "MGA--GABRB3^GABRB3^ENSG00000166206.15" ; gene_name GABRB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129231.10" ; havana_transcript "OTTHUMT00000251329.5" ; hgnc_id "HGNC:4083" ; level 2 ; orig_coord_info "chr15,26773645,26773724,-" ; protein_id "ENSP00000299267.4" ; tag basic CCDS ; transcript_id "MGA--GABRB3^ENST00000299267.8" ; transcript_name "GABRB3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MIPOL1--TTC6 ENSEMBL gene 72124 88111 . + . FI_gene_label "TTC6^ENSG00000139865.16" ; ID "MIPOL1--TTC6^TTC6^ENSG00000139865.16" ; exon_id "ENSE00003549424.1" ; exon_number 2 ; gene_id "MIPOL1--TTC6^TTC6^ENSG00000139865.16" ; gene_name TTC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157369.8" ; hgnc_id "HGNC:19739" ; level 3 ; orig_coord_info "chr14,37796310,37796370,+" ; protein_id "ENSP00000267368.7" ; tag basic ; transcript_id "MIPOL1--TTC6^ENST00000267368.11" ; transcript_name "TTC6-201" ; transcript_support_level 5 ; transcript_type protein_coding
MIPOL1--TTC6 ENSEMBL mRNA 72124 88111 . + . FI_gene_label "TTC6^ENSG00000139865.16" ; ID "MIPOL1--TTC6^ENST00000267368.11" ; Parent "MIPOL1--TTC6^TTC6^ENSG00000139865.16" ; exon_id "ENSE00003549424.1" ; exon_number 2 ; gene_id "MIPOL1--TTC6^TTC6^ENSG00000139865.16" ; gene_name TTC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157369.8" ; hgnc_id "HGNC:19739" ; level 3 ; orig_coord_info "chr14,37796310,37796370,+" ; protein_id "ENSP00000267368.7" ; tag basic ; transcript_id "MIPOL1--TTC6^ENST00000267368.11" ; transcript_name "TTC6-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MIPOL1--TTC6 HAVANA gene 1038 44487 . + . FI_gene_label "MIPOL1^ENSG00000151338.18" ; ID "MIPOL1--TTC6^MIPOL1^ENSG00000151338.18" ; ccdsid "CCDS9664.1" ; exon_id "ENSE00003679602.1" ; exon_number 4 ; gene_id "MIPOL1--TTC6^MIPOL1^ENSG00000151338.18" ; gene_name MIPOL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140252.3" ; havana_transcript "OTTHUMT00000276734.1" ; hgnc_id "HGNC:21460" ; level 2 ; orig_coord_info "chr14,37247889,37247907,+" ; protein_id "ENSP00000333539.7" ; tag basic appris_principal_2 CCDS ; transcript_id "MIPOL1--TTC6^ENST00000327441.11" ; transcript_name "MIPOL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MIPOL1--TTC6 HAVANA mRNA 1038 44487 . + . FI_gene_label "MIPOL1^ENSG00000151338.18" ; ID "MIPOL1--TTC6^ENST00000327441.11" ; Parent "MIPOL1--TTC6^MIPOL1^ENSG00000151338.18" ; ccdsid "CCDS9664.1" ; exon_id "ENSE00003679602.1" ; exon_number 4 ; gene_id "MIPOL1--TTC6^MIPOL1^ENSG00000151338.18" ; gene_name MIPOL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140252.3" ; havana_transcript "OTTHUMT00000276734.1" ; hgnc_id "HGNC:21460" ; level 2 ; orig_coord_info "chr14,37247889,37247907,+" ; protein_id "ENSP00000333539.7" ; tag basic appris_principal_2 CCDS ; transcript_id "MIPOL1--TTC6^ENST00000327441.11" ; transcript_name "MIPOL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MRPS14--TNR ENSEMBL gene 10171 37407 . + . FI_gene_label "TNR^ENSG00000116147.17" ; ID "MRPS14--TNR^TNR^ENSG00000116147.17" ; ccdsid "CCDS1318.1" ; exon_id "ENSE00001445343.1" ; exon_number 4 ; gene_id "MRPS14--TNR^TNR^ENSG00000116147.17" ; gene_name TNR ; gene_type protein_coding ; havana_gene "OTTHUMG00000034876.7" ; hgnc_id "HGNC:11953" ; level 3 ; orig_coord_info "chr1,175406216,175406714,-" ; protein_id "ENSP00000263525.2" ; tag basic appris_principal_1 CCDS ; transcript_id "MRPS14--TNR^ENST00000263525.6" ; transcript_name "TNR-201" ; transcript_support_level 5 ; transcript_type protein_coding
MRPS14--TNR ENSEMBL mRNA 10171 37407 . + . FI_gene_label "TNR^ENSG00000116147.17" ; ID "MRPS14--TNR^ENST00000263525.6" ; Parent "MRPS14--TNR^TNR^ENSG00000116147.17" ; ccdsid "CCDS1318.1" ; exon_id "ENSE00001445343.1" ; exon_number 4 ; gene_id "MRPS14--TNR^TNR^ENSG00000116147.17" ; gene_name TNR ; gene_type protein_coding ; havana_gene "OTTHUMG00000034876.7" ; hgnc_id "HGNC:11953" ; level 3 ; orig_coord_info "chr1,175406216,175406714,-" ; protein_id "ENSP00000263525.2" ; tag basic appris_principal_1 CCDS ; transcript_id "MRPS14--TNR^ENST00000263525.6" ; transcript_name "TNR-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MRPS14--TNR HAVANA gene 1011 3920 . + . FI_gene_label "MRPS14^ENSG00000120333.4" ; ID "MRPS14--TNR^MRPS14^ENSG00000120333.4" ; exon_id "ENSE00001932658.1" ; exon_number 1 ; gene_id "MRPS14--TNR^MRPS14^ENSG00000120333.4" ; gene_name MRPS14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000034878.4" ; havana_transcript "OTTHUMT00000084417.4" ; hgnc_id "HGNC:14049" ; level 2 ; orig_coord_info "chr1,175023272,175023408,-" ; protein_id "ENSP00000431220.1" ; transcript_id "MRPS14--TNR^ENST00000367677.3" ; transcript_name "MRPS14-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
MRPS14--TNR HAVANA mRNA 1011 3920 . + . FI_gene_label "MRPS14^ENSG00000120333.4" ; ID "MRPS14--TNR^ENST00000367677.3" ; Parent "MRPS14--TNR^MRPS14^ENSG00000120333.4" ; exon_id "ENSE00001932658.1" ; exon_number 1 ; gene_id "MRPS14--TNR^MRPS14^ENSG00000120333.4" ; gene_name MRPS14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000034878.4" ; havana_transcript "OTTHUMT00000084417.4" ; hgnc_id "HGNC:14049" ; level 2 ; orig_coord_info "chr1,175023272,175023408,-" ; protein_id "ENSP00000431220.1" ; transcript_id "MRPS14--TNR^ENST00000367677.3" ; transcript_name "MRPS14-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
MYO5C--SHC4 HAVANA gene 1001 48312 . + . FI_gene_label "MYO5C^ENSG00000128833.13" ; ID "MYO5C--SHC4^MYO5C^ENSG00000128833.13" ; ccdsid "CCDS42036.1" ; exon_id "ENSE00002566073.2" ; exon_number 1 ; gene_id "MYO5C--SHC4^MYO5C^ENSG00000128833.13" ; gene_name MYO5C ; gene_type protein_coding ; havana_gene "OTTHUMG00000172630.3" ; havana_transcript "OTTHUMT00000419562.2" ; hgnc_id "HGNC:7604" ; level 2 ; orig_coord_info "chr15,52295610,52295636,-" ; protein_id "ENSP00000261839.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MYO5C--SHC4^ENST00000261839.12" ; transcript_name "MYO5C-201" ; transcript_support_level 1 ; transcript_type protein_coding
MYO5C--SHC4 HAVANA mRNA 1001 48312 . + . FI_gene_label "MYO5C^ENSG00000128833.13" ; ID "MYO5C--SHC4^ENST00000261839.12" ; Parent "MYO5C--SHC4^MYO5C^ENSG00000128833.13" ; ccdsid "CCDS42036.1" ; exon_id "ENSE00002566073.2" ; exon_number 1 ; gene_id "MYO5C--SHC4^MYO5C^ENSG00000128833.13" ; gene_name MYO5C ; gene_type protein_coding ; havana_gene "OTTHUMG00000172630.3" ; havana_transcript "OTTHUMT00000419562.2" ; hgnc_id "HGNC:7604" ; level 2 ; orig_coord_info "chr15,52295610,52295636,-" ; protein_id "ENSP00000261839.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MYO5C--SHC4^ENST00000261839.12" ; transcript_name "MYO5C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MYO5C--SHC4 HAVANA gene 51313 69922 . + . FI_gene_label "SHC4^ENSG00000185634.12" ; ID "MYO5C--SHC4^SHC4^ENSG00000185634.12" ; ccdsid "CCDS10130.1" ; exon_id "ENSE00001316485.5" ; exon_number 1 ; gene_id "MYO5C--SHC4^SHC4^ENSG00000185634.12" ; gene_name SHC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131513.3" ; havana_transcript "OTTHUMT00000254371.2" ; hgnc_id "HGNC:16743" ; level 2 ; orig_coord_info "chr15,48962431,48963015,-" ; protein_id "ENSP00000329668.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MYO5C--SHC4^ENST00000332408.9" ; transcript_name "SHC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
MYO5C--SHC4 HAVANA mRNA 51313 69922 . + . FI_gene_label "SHC4^ENSG00000185634.12" ; ID "MYO5C--SHC4^ENST00000332408.9" ; Parent "MYO5C--SHC4^SHC4^ENSG00000185634.12" ; ccdsid "CCDS10130.1" ; exon_id "ENSE00001316485.5" ; exon_number 1 ; gene_id "MYO5C--SHC4^SHC4^ENSG00000185634.12" ; gene_name SHC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131513.3" ; havana_transcript "OTTHUMT00000254371.2" ; hgnc_id "HGNC:16743" ; level 2 ; orig_coord_info "chr15,48962431,48963015,-" ; protein_id "ENSP00000329668.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MYO5C--SHC4^ENST00000332408.9" ; transcript_name "SHC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PANK2--MAVS HAVANA gene 1085 18641 . + . FI_gene_label "PANK2^ENSG00000125779.23" ; ID "PANK2--MAVS^PANK2^ENSG00000125779.23" ; ccdsid "CCDS13071.2" ; exon_id "ENSE00001481494.2" ; exon_number 1 ; gene_id "PANK2--MAVS^PANK2^ENSG00000125779.23" ; gene_name PANK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031768.7" ; havana_transcript "OTTHUMT00000077793.2" ; hgnc_id "HGNC:15894" ; level 2 ; orig_coord_info "chr20,3889101,3889728,+" ; protein_id "ENSP00000313377.4" ; tag basic appris_principal_2 CCDS ; transcript_id "PANK2--MAVS^ENST00000316562.9" ; transcript_name "PANK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PANK2--MAVS HAVANA mRNA 1085 18641 . + . FI_gene_label "PANK2^ENSG00000125779.23" ; ID "PANK2--MAVS^ENST00000316562.9" ; Parent "PANK2--MAVS^PANK2^ENSG00000125779.23" ; ccdsid "CCDS13071.2" ; exon_id "ENSE00001481494.2" ; exon_number 1 ; gene_id "PANK2--MAVS^PANK2^ENSG00000125779.23" ; gene_name PANK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031768.7" ; havana_transcript "OTTHUMT00000077793.2" ; hgnc_id "HGNC:15894" ; level 2 ; orig_coord_info "chr20,3889101,3889728,+" ; protein_id "ENSP00000313377.4" ; tag basic appris_principal_2 CCDS ; transcript_id "PANK2--MAVS^ENST00000316562.9" ; transcript_name "PANK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PANK2--MAVS ENSEMBL gene 21642 39055 . + . FI_gene_label "MAVS^ENSG00000088888.18" ; ID "PANK2--MAVS^MAVS^ENSG00000088888.18" ; ccdsid "CCDS56176.1" ; exon_id "ENSE00003545296.1" ; exon_number 3 ; gene_id "PANK2--MAVS^MAVS^ENSG00000088888.18" ; gene_name MAVS ; gene_type protein_coding ; havana_gene "OTTHUMG00000031765.5" ; hgnc_id "HGNC:29233" ; level 3 ; orig_coord_info "chr20,3861463,3861504,+" ; protein_id "ENSP00000413749.2" ; tag basic CCDS ; transcript_id "PANK2--MAVS^ENST00000416600.6" ; transcript_name "MAVS-201" ; transcript_support_level 1 ; transcript_type protein_coding
PANK2--MAVS ENSEMBL mRNA 21642 39055 . + . FI_gene_label "MAVS^ENSG00000088888.18" ; ID "PANK2--MAVS^ENST00000416600.6" ; Parent "PANK2--MAVS^MAVS^ENSG00000088888.18" ; ccdsid "CCDS56176.1" ; exon_id "ENSE00003545296.1" ; exon_number 3 ; gene_id "PANK2--MAVS^MAVS^ENSG00000088888.18" ; gene_name MAVS ; gene_type protein_coding ; havana_gene "OTTHUMG00000031765.5" ; hgnc_id "HGNC:29233" ; level 3 ; orig_coord_info "chr20,3861463,3861504,+" ; protein_id "ENSP00000413749.2" ; tag basic CCDS ; transcript_id "PANK2--MAVS^ENST00000416600.6" ; transcript_name "MAVS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PEX3--AIG1 HAVANA gene 16188 29637 . + . FI_gene_label "AIG1^ENSG00000146416.19" ; ID "PEX3--AIG1^AIG1^ENSG00000146416.19" ; exon_id "ENSE00001288659.3" ; exon_number 1 ; gene_id "PEX3--AIG1^AIG1^ENSG00000146416.19" ; gene_name AIG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015721.9" ; havana_transcript "OTTHUMT00000042510.1" ; hgnc_id "HGNC:21607" ; level 2 ; orig_coord_info "chr6,143060926,143061066,+" ; protein_id "ENSP00000275235.4" ; tag basic ; transcript_id "PEX3--AIG1^ENST00000275235.8" ; transcript_name "AIG1-201" ; transcript_support_level 2 ; transcript_type protein_coding
PEX3--AIG1 HAVANA mRNA 16188 29637 . + . FI_gene_label "AIG1^ENSG00000146416.19" ; ID "PEX3--AIG1^ENST00000275235.8" ; Parent "PEX3--AIG1^AIG1^ENSG00000146416.19" ; exon_id "ENSE00001288659.3" ; exon_number 1 ; gene_id "PEX3--AIG1^AIG1^ENSG00000146416.19" ; gene_name AIG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015721.9" ; havana_transcript "OTTHUMT00000042510.1" ; hgnc_id "HGNC:21607" ; level 2 ; orig_coord_info "chr6,143060926,143061066,+" ; protein_id "ENSP00000275235.4" ; tag basic ; transcript_id "PEX3--AIG1^ENST00000275235.8" ; transcript_name "AIG1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PEX3--AIG1 HAVANA gene 1001 12782 . + . FI_gene_label "PEX3^ENSG00000034693.15" ; ID "PEX3--AIG1^PEX3^ENSG00000034693.15" ; ccdsid "CCDS5199.1" ; exon_id "ENSE00001856565.2" ; exon_number 1 ; gene_id "PEX3--AIG1^PEX3^ENSG00000034693.15" ; gene_name PEX3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015730.4" ; havana_transcript "OTTHUMT00000042525.2" ; hgnc_id "HGNC:8858" ; level 2 ; orig_coord_info "chr6,143451043,143451115,+" ; protein_id "ENSP00000356563.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PEX3--AIG1^ENST00000367591.5" ; transcript_name "PEX3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PEX3--AIG1 HAVANA mRNA 1001 12782 . + . FI_gene_label "PEX3^ENSG00000034693.15" ; ID "PEX3--AIG1^ENST00000367591.5" ; Parent "PEX3--AIG1^PEX3^ENSG00000034693.15" ; ccdsid "CCDS5199.1" ; exon_id "ENSE00001856565.2" ; exon_number 1 ; gene_id "PEX3--AIG1^PEX3^ENSG00000034693.15" ; gene_name PEX3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015730.4" ; havana_transcript "OTTHUMT00000042525.2" ; hgnc_id "HGNC:8858" ; level 2 ; orig_coord_info "chr6,143451043,143451115,+" ; protein_id "ENSP00000356563.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PEX3--AIG1^ENST00000367591.5" ; transcript_name "PEX3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPIP5K1--OTUD7A HAVANA gene 29825 57013 . + . FI_gene_label "OTUD7A^ENSG00000169918.10" ; ID "PPIP5K1--OTUD7A^OTUD7A^ENSG00000169918.10" ; exon_id "ENSE00003477088.1" ; exon_number 3 ; gene_id "PPIP5K1--OTUD7A^OTUD7A^ENSG00000169918.10" ; gene_name OTUD7A ; gene_type protein_coding ; havana_gene "OTTHUMG00000129275.3" ; hgnc_id "HGNC:20718" ; level 2 ; orig_coord_info "chr15,31655096,31655246,-" ; protein_id "ENSP00000305926.5" ; tag CAGE_supported_TSS mRNA_end_NF MANE_Select appris_principal_5 ; transcript_id "PPIP5K1--OTUD7A^ENST00000307050.6" ; transcript_name "OTUD7A-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPIP5K1--OTUD7A HAVANA mRNA 29825 57013 . + . FI_gene_label "OTUD7A^ENSG00000169918.10" ; ID "PPIP5K1--OTUD7A^ENST00000307050.6" ; Parent "PPIP5K1--OTUD7A^OTUD7A^ENSG00000169918.10" ; exon_id "ENSE00003477088.1" ; exon_number 3 ; gene_id "PPIP5K1--OTUD7A^OTUD7A^ENSG00000169918.10" ; gene_name OTUD7A ; gene_type protein_coding ; havana_gene "OTTHUMG00000129275.3" ; hgnc_id "HGNC:20718" ; level 2 ; orig_coord_info "chr15,31655096,31655246,-" ; protein_id "ENSP00000305926.5" ; tag CAGE_supported_TSS mRNA_end_NF MANE_Select appris_principal_5 ; transcript_id "PPIP5K1--OTUD7A^ENST00000307050.6" ; transcript_name "OTUD7A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPIP5K1--OTUD7A HAVANA gene 1053 26708 . + . FI_gene_label "PPIP5K1^ENSG00000168781.22" ; ID "PPIP5K1--OTUD7A^PPIP5K1^ENSG00000168781.22" ; ccdsid "CCDS32215.1" ; exon_id "ENSE00003692465.1" ; exon_number 2 ; gene_id "PPIP5K1--OTUD7A^PPIP5K1^ENSG00000168781.22" ; gene_name PPIP5K1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059758.19" ; havana_transcript "OTTHUMT00000132910.1" ; hgnc_id "HGNC:29023" ; level 2 ; orig_coord_info "chr15,43584358,43584504,-" ; protein_id "ENSP00000334779.4" ; tag basic appris_principal_4 CCDS ; transcript_id "PPIP5K1--OTUD7A^ENST00000334933.8" ; transcript_name "PPIP5K1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPIP5K1--OTUD7A HAVANA mRNA 1053 26708 . + . FI_gene_label "PPIP5K1^ENSG00000168781.22" ; ID "PPIP5K1--OTUD7A^ENST00000334933.8" ; Parent "PPIP5K1--OTUD7A^PPIP5K1^ENSG00000168781.22" ; ccdsid "CCDS32215.1" ; exon_id "ENSE00003692465.1" ; exon_number 2 ; gene_id "PPIP5K1--OTUD7A^PPIP5K1^ENSG00000168781.22" ; gene_name PPIP5K1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059758.19" ; havana_transcript "OTTHUMT00000132910.1" ; hgnc_id "HGNC:29023" ; level 2 ; orig_coord_info "chr15,43584358,43584504,-" ; protein_id "ENSP00000334779.4" ; tag basic appris_principal_4 CCDS ; transcript_id "PPIP5K1--OTUD7A^ENST00000334933.8" ; transcript_name "PPIP5K1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPL--SEC14L5 HAVANA gene 26449 45543 . + . FI_gene_label "SEC14L5^ENSG00000103184.12" ; ID "PPL--SEC14L5^SEC14L5^ENSG00000103184.12" ; ccdsid "CCDS45403.1" ; exon_id "ENSE00001178287.1" ; exon_number 2 ; gene_id "PPL--SEC14L5^SEC14L5^ENSG00000103184.12" ; gene_name SEC14L5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000176942.4" ; havana_transcript "OTTHUMT00000434379.2" ; hgnc_id "HGNC:29032" ; level 2 ; orig_coord_info "chr16,4959324,4959386,+" ; protein_id "ENSP00000251170.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPL--SEC14L5^ENST00000251170.12" ; transcript_name "SEC14L5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPL--SEC14L5 HAVANA mRNA 26449 45543 . + . FI_gene_label "SEC14L5^ENSG00000103184.12" ; ID "PPL--SEC14L5^ENST00000251170.12" ; Parent "PPL--SEC14L5^SEC14L5^ENSG00000103184.12" ; ccdsid "CCDS45403.1" ; exon_id "ENSE00001178287.1" ; exon_number 2 ; gene_id "PPL--SEC14L5^SEC14L5^ENSG00000103184.12" ; gene_name SEC14L5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000176942.4" ; havana_transcript "OTTHUMT00000434379.2" ; hgnc_id "HGNC:29032" ; level 2 ; orig_coord_info "chr16,4959324,4959386,+" ; protein_id "ENSP00000251170.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPL--SEC14L5^ENST00000251170.12" ; transcript_name "SEC14L5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPL--SEC14L5 HAVANA gene 2179 23448 . + . FI_gene_label "PPL^ENSG00000118898.16" ; ID "PPL--SEC14L5^PPL^ENSG00000118898.16" ; ccdsid "CCDS10526.1" ; exon_id "ENSE00001318895.4" ; exon_number 1 ; gene_id "PPL--SEC14L5^PPL^ENSG00000118898.16" ; gene_name PPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000129528.9" ; havana_transcript "OTTHUMT00000251715.2" ; hgnc_id "HGNC:9273" ; level 2 ; orig_coord_info "chr16,4936984,4937045,-" ; protein_id "ENSP00000340510.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PPL--SEC14L5^ENST00000345988.7" ; transcript_name "PPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPL--SEC14L5 HAVANA mRNA 2179 23448 . + . FI_gene_label "PPL^ENSG00000118898.16" ; ID "PPL--SEC14L5^ENST00000345988.7" ; Parent "PPL--SEC14L5^PPL^ENSG00000118898.16" ; ccdsid "CCDS10526.1" ; exon_id "ENSE00001318895.4" ; exon_number 1 ; gene_id "PPL--SEC14L5^PPL^ENSG00000118898.16" ; gene_name PPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000129528.9" ; havana_transcript "OTTHUMT00000251715.2" ; hgnc_id "HGNC:9273" ; level 2 ; orig_coord_info "chr16,4936984,4937045,-" ; protein_id "ENSP00000340510.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PPL--SEC14L5^ENST00000345988.7" ; transcript_name "PPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBM14--RBM4 HAVANA gene 15043 21268 . + . FI_gene_label "RBM4^ENSG00000173933.21" ; ID "RBM14--RBM4^RBM4^ENSG00000173933.21" ; ccdsid "CCDS41676.1" ; exon_id "ENSE00003513724.1" ; exon_number 2 ; gene_id "RBM14--RBM4^RBM4^ENSG00000173933.21" ; gene_name RBM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154171.7" ; havana_transcript "OTTHUMT00000334210.2" ; hgnc_id "HGNC:9901" ; level 2 ; orig_coord_info "chr11,66639712,66640123,+" ; protein_id "ENSP00000309166.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310092.12" ; transcript_name "RBM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM14--RBM4 HAVANA mRNA 15043 21268 . + . FI_gene_label "RBM4^ENSG00000173933.21" ; ID "RBM14--RBM4^ENST00000310092.12" ; Parent "RBM14--RBM4^RBM4^ENSG00000173933.21" ; ccdsid "CCDS41676.1" ; exon_id "ENSE00003513724.1" ; exon_number 2 ; gene_id "RBM14--RBM4^RBM4^ENSG00000173933.21" ; gene_name RBM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154171.7" ; havana_transcript "OTTHUMT00000334210.2" ; hgnc_id "HGNC:9901" ; level 2 ; orig_coord_info "chr11,66639712,66640123,+" ; protein_id "ENSP00000309166.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310092.12" ; transcript_name "RBM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBM14--RBM4 HAVANA gene 1005 12006 . + . FI_gene_label "RBM14^ENSG00000239306.5" ; ID "RBM14--RBM4^RBM14^ENSG00000239306.5" ; ccdsid "CCDS8147.1" ; exon_id "ENSE00003902856.1" ; exon_number 1 ; gene_id "RBM14--RBM4^RBM14^ENSG00000239306.5" ; gene_name RBM14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140380.5" ; havana_transcript "OTTHUMT00000277128.1" ; hgnc_id "HGNC:14219" ; level 2 ; orig_coord_info "chr11,66616721,66617057,+" ; protein_id "ENSP00000311747.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310137.5" ; transcript_name "RBM14-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM14--RBM4 HAVANA mRNA 1005 12006 . + . FI_gene_label "RBM14^ENSG00000239306.5" ; ID "RBM14--RBM4^ENST00000310137.5" ; Parent "RBM14--RBM4^RBM14^ENSG00000239306.5" ; ccdsid "CCDS8147.1" ; exon_id "ENSE00003902856.1" ; exon_number 1 ; gene_id "RBM14--RBM4^RBM14^ENSG00000239306.5" ; gene_name RBM14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140380.5" ; havana_transcript "OTTHUMT00000277128.1" ; hgnc_id "HGNC:14219" ; level 2 ; orig_coord_info "chr11,66616721,66617057,+" ; protein_id "ENSP00000311747.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310137.5" ; transcript_name "RBM14-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SFMBT1--RFT1 HAVANA gene 31676 48007 . + . FI_gene_label "RFT1^ENSG00000163933.10" ; ID "SFMBT1--RFT1^RFT1^ENSG00000163933.10" ; ccdsid "CCDS2869.1" ; exon_id "ENSE00001906545.2" ; exon_number 1 ; gene_id "SFMBT1--RFT1^RFT1^ENSG00000163933.10" ; gene_name RFT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000074035.6" ; havana_transcript "OTTHUMT00000157136.3" ; hgnc_id "HGNC:30220" ; level 2 ; orig_coord_info "chr3,53130338,53130400,-" ; protein_id "ENSP00000296292.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SFMBT1--RFT1^ENST00000296292.8" ; transcript_name "RFT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SFMBT1--RFT1 HAVANA mRNA 31676 48007 . + . FI_gene_label "RFT1^ENSG00000163933.10" ; ID "SFMBT1--RFT1^ENST00000296292.8" ; Parent "SFMBT1--RFT1^RFT1^ENSG00000163933.10" ; ccdsid "CCDS2869.1" ; exon_id "ENSE00001906545.2" ; exon_number 1 ; gene_id "SFMBT1--RFT1^RFT1^ENSG00000163933.10" ; gene_name RFT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000074035.6" ; havana_transcript "OTTHUMT00000157136.3" ; hgnc_id "HGNC:30220" ; level 2 ; orig_coord_info "chr3,53130338,53130400,-" ; protein_id "ENSP00000296292.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SFMBT1--RFT1^ENST00000296292.8" ; transcript_name "RFT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SFMBT1--RFT1 HAVANA gene 1678 28657 . + . FI_gene_label "SFMBT1^ENSG00000163935.14" ; ID "SFMBT1--RFT1^SFMBT1^ENSG00000163935.14" ; ccdsid "CCDS2867.1" ; exon_id "ENSE00003602396.1" ; exon_number 2 ; gene_id "SFMBT1--RFT1^SFMBT1^ENSG00000163935.14" ; gene_name SFMBT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159052.15" ; havana_transcript "OTTHUMT00000353040.4" ; hgnc_id "HGNC:20255" ; level 2 ; orig_coord_info "chr3,52969101,52969128,-" ; protein_id "ENSP00000378235.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SFMBT1--RFT1^ENST00000394752.8" ; transcript_name "SFMBT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SFMBT1--RFT1 HAVANA mRNA 1678 28657 . + . FI_gene_label "SFMBT1^ENSG00000163935.14" ; ID "SFMBT1--RFT1^ENST00000394752.8" ; Parent "SFMBT1--RFT1^SFMBT1^ENSG00000163935.14" ; ccdsid "CCDS2867.1" ; exon_id "ENSE00003602396.1" ; exon_number 2 ; gene_id "SFMBT1--RFT1^SFMBT1^ENSG00000163935.14" ; gene_name SFMBT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159052.15" ; havana_transcript "OTTHUMT00000353040.4" ; hgnc_id "HGNC:20255" ; level 2 ; orig_coord_info "chr3,52969101,52969128,-" ; protein_id "ENSP00000378235.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SFMBT1--RFT1^ENST00000394752.8" ; transcript_name "SFMBT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC34A2--ROS1 HAVANA gene 21924 69303 . + . FI_gene_label "ROS1^ENSG00000047936.11" ; ID "SLC34A2--ROS1^ROS1^ENSG00000047936.11" ; exon_id "ENSE00003906517.1" ; exon_number 1 ; gene_id "SLC34A2--ROS1^ROS1^ENSG00000047936.11" ; gene_name ROS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016188.1" ; havana_transcript "OTTHUMT00000043465.1" ; hgnc_id "HGNC:10261" ; level 2 ; orig_coord_info "chr6,117425534,117425656,-" ; protein_id "ENSP00000357493.3" ; tag basic MANE_Select appris_principal_4 ; transcript_id "SLC34A2--ROS1^ENST00000368507.8" ; transcript_name "ROS1-201" ; transcript_support_level 5 ; transcript_type protein_coding
SLC34A2--ROS1 HAVANA mRNA 21924 69303 . + . FI_gene_label "ROS1^ENSG00000047936.11" ; ID "SLC34A2--ROS1^ENST00000368507.8" ; Parent "SLC34A2--ROS1^ROS1^ENSG00000047936.11" ; exon_id "ENSE00003906517.1" ; exon_number 1 ; gene_id "SLC34A2--ROS1^ROS1^ENSG00000047936.11" ; gene_name ROS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016188.1" ; havana_transcript "OTTHUMT00000043465.1" ; hgnc_id "HGNC:10261" ; level 2 ; orig_coord_info "chr6,117425534,117425656,-" ; protein_id "ENSP00000357493.3" ; tag basic MANE_Select appris_principal_4 ; transcript_id "SLC34A2--ROS1^ENST00000368507.8" ; transcript_name "ROS1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
SLC34A2--ROS1 HAVANA gene 2897 18923 . + . FI_gene_label "SLC34A2^ENSG00000157765.13" ; ID "SLC34A2--ROS1^SLC34A2^ENSG00000157765.13" ; ccdsid "CCDS3435.1" ; exon_id "ENSE00001034812.5" ; exon_number 2 ; gene_id "SLC34A2--ROS1^SLC34A2^ENSG00000157765.13" ; gene_name SLC34A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000097757.6" ; havana_transcript "OTTHUMT00000214990.2" ; hgnc_id "HGNC:11020" ; level 2 ; orig_coord_info "chr4,25662501,25662612,+" ; protein_id "ENSP00000371483.3" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "SLC34A2--ROS1^ENST00000382051.8" ; transcript_name "SLC34A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC34A2--ROS1 HAVANA mRNA 2897 18923 . + . FI_gene_label "SLC34A2^ENSG00000157765.13" ; ID "SLC34A2--ROS1^ENST00000382051.8" ; Parent "SLC34A2--ROS1^SLC34A2^ENSG00000157765.13" ; ccdsid "CCDS3435.1" ; exon_id "ENSE00001034812.5" ; exon_number 2 ; gene_id "SLC34A2--ROS1^SLC34A2^ENSG00000157765.13" ; gene_name SLC34A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000097757.6" ; havana_transcript "OTTHUMT00000214990.2" ; hgnc_id "HGNC:11020" ; level 2 ; orig_coord_info "chr4,25662501,25662612,+" ; protein_id "ENSP00000371483.3" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "SLC34A2--ROS1^ENST00000382051.8" ; transcript_name "SLC34A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SMYD3--AHCTF1 HAVANA gene 33845 74514 . + . FI_gene_label "AHCTF1^ENSG00000153207.16" ; ID "SMYD3--AHCTF1^AHCTF1^ENSG00000153207.16" ; ccdsid "CCDS1629.2" ; exon_id "ENSE00003580612.1" ; exon_number 1 ; gene_id "SMYD3--AHCTF1^AHCTF1^ENSG00000153207.16" ; gene_name AHCTF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040706.4" ; havana_transcript "OTTHUMT00000097818.1" ; hgnc_id "HGNC:24618" ; level 2 ; orig_coord_info "chr1,246931308,246931327,-" ; protein_id "ENSP00000355465.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "SMYD3--AHCTF1^ENST00000326225.3" ; transcript_name "AHCTF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SMYD3--AHCTF1 HAVANA mRNA 33845 74514 . + . FI_gene_label "AHCTF1^ENSG00000153207.16" ; ID "SMYD3--AHCTF1^ENST00000326225.3" ; Parent "SMYD3--AHCTF1^AHCTF1^ENSG00000153207.16" ; ccdsid "CCDS1629.2" ; exon_id "ENSE00003580612.1" ; exon_number 1 ; gene_id "SMYD3--AHCTF1^AHCTF1^ENSG00000153207.16" ; gene_name AHCTF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040706.4" ; havana_transcript "OTTHUMT00000097818.1" ; hgnc_id "HGNC:24618" ; level 2 ; orig_coord_info "chr1,246931308,246931327,-" ; protein_id "ENSP00000355465.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "SMYD3--AHCTF1^ENST00000326225.3" ; transcript_name "AHCTF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SMYD3--AHCTF1 HAVANA gene 11792 25666 . + . FI_gene_label "SMYD3^ENSG00000185420.19" ; ID "SMYD3--AHCTF1^SMYD3^ENSG00000185420.19" ; exon_id "ENSE00003645014.1" ; exon_number 3 ; gene_id "SMYD3--AHCTF1^SMYD3^ENSG00000185420.19" ; gene_name SMYD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040508.8" ; havana_transcript "OTTHUMT00000318377.3" ; hgnc_id "HGNC:15513" ; level 2 ; orig_coord_info "chr1,245929870,245929901,-" ; protein_id "ENSP00000375712.2" ; tag mRNA_end_NF cds_end_NF ; transcript_id "SMYD3--AHCTF1^ENST00000391836.3" ; transcript_name "SMYD3-203" ; transcript_support_level 5 ; transcript_type protein_coding
SMYD3--AHCTF1 HAVANA mRNA 11792 25666 . + . FI_gene_label "SMYD3^ENSG00000185420.19" ; ID "SMYD3--AHCTF1^ENST00000391836.3" ; Parent "SMYD3--AHCTF1^SMYD3^ENSG00000185420.19" ; exon_id "ENSE00003645014.1" ; exon_number 3 ; gene_id "SMYD3--AHCTF1^SMYD3^ENSG00000185420.19" ; gene_name SMYD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040508.8" ; havana_transcript "OTTHUMT00000318377.3" ; hgnc_id "HGNC:15513" ; level 2 ; orig_coord_info "chr1,245929870,245929901,-" ; protein_id "ENSP00000375712.2" ; tag mRNA_end_NF cds_end_NF ; transcript_id "SMYD3--AHCTF1^ENST00000391836.3" ; transcript_name "SMYD3-203" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
SNU13--LLPH HAVANA gene 4331 9276 . + . FI_gene_label "SNU13^ENSG00000100138.15" ; ID "SNU13--LLPH^SNU13^ENSG00000100138.15" ; ccdsid "CCDS14022.1" ; exon_id "ENSE00001388935.4" ; exon_number 1 ; gene_id "SNU13--LLPH^SNU13^ENSG00000100138.15" ; gene_name SNU13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151189.9" ; havana_transcript "OTTHUMT00000321683.2" ; hgnc_id "HGNC:7819" ; level 2 ; orig_coord_info "chr22,41682356,41682358,-" ; protein_id "ENSP00000215956.5" ; tag basic appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000215956.10" ; transcript_name "SNU13-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNU13--LLPH HAVANA mRNA 4331 9276 . + . FI_gene_label "SNU13^ENSG00000100138.15" ; ID "SNU13--LLPH^ENST00000215956.10" ; Parent "SNU13--LLPH^SNU13^ENSG00000100138.15" ; ccdsid "CCDS14022.1" ; exon_id "ENSE00001388935.4" ; exon_number 1 ; gene_id "SNU13--LLPH^SNU13^ENSG00000100138.15" ; gene_name SNU13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151189.9" ; havana_transcript "OTTHUMT00000321683.2" ; hgnc_id "HGNC:7819" ; level 2 ; orig_coord_info "chr22,41682356,41682358,-" ; protein_id "ENSP00000215956.5" ; tag basic appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000215956.10" ; transcript_name "SNU13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SNU13--LLPH HAVANA gene 13051 23027 . + . FI_gene_label "LLPH^ENSG00000139233.7" ; ID "SNU13--LLPH^LLPH^ENSG00000139233.7" ; ccdsid "CCDS8974.1" ; exon_id "ENSE00003592110.1" ; exon_number 2 ; gene_id "SNU13--LLPH^LLPH^ENSG00000139233.7" ; gene_name LLPH ; gene_type protein_coding ; havana_gene "OTTHUMG00000168959.4" ; havana_transcript "OTTHUMT00000401752.4" ; hgnc_id "HGNC:28229" ; level 2 ; orig_coord_info "chr12,66128896,66129106,-" ; protein_id "ENSP00000266604.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000266604.7" ; transcript_name "LLPH-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNU13--LLPH HAVANA mRNA 13051 23027 . + . FI_gene_label "LLPH^ENSG00000139233.7" ; ID "SNU13--LLPH^ENST00000266604.7" ; Parent "SNU13--LLPH^LLPH^ENSG00000139233.7" ; ccdsid "CCDS8974.1" ; exon_id "ENSE00003592110.1" ; exon_number 2 ; gene_id "SNU13--LLPH^LLPH^ENSG00000139233.7" ; gene_name LLPH ; gene_type protein_coding ; havana_gene "OTTHUMG00000168959.4" ; havana_transcript "OTTHUMT00000401752.4" ; hgnc_id "HGNC:28229" ; level 2 ; orig_coord_info "chr12,66128896,66129106,-" ; protein_id "ENSP00000266604.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000266604.7" ; transcript_name "LLPH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SOGA3--KIAA0408 HAVANA gene 20137 25049 . + . FI_gene_label "KIAA0408^ENSG00000189367.15" ; ID "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; exon_id "ENSE00001831610.2" ; exon_number 1 ; gene_id "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; gene_name KIAA0408 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166439.4" ; havana_transcript "OTTHUMT00000042140.2" ; hgnc_id "HGNC:21636" ; level 1 ; orig_coord_info "chr6,127446872,127447085,-" ; protein_id "ENSP00000436178.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SOGA3--KIAA0408^ENST00000465254.2" ; transcript_name "KIAA0408-202" ; transcript_support_level 2 ; transcript_type protein_coding
SOGA3--KIAA0408 HAVANA mRNA 20137 25049 . + . FI_gene_label "KIAA0408^ENSG00000189367.15" ; ID "SOGA3--KIAA0408^ENST00000465254.2" ; Parent "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; exon_id "ENSE00001831610.2" ; exon_number 1 ; gene_id "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; gene_name KIAA0408 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166439.4" ; havana_transcript "OTTHUMT00000042140.2" ; hgnc_id "HGNC:21636" ; level 1 ; orig_coord_info "chr6,127446872,127447085,-" ; protein_id "ENSP00000436178.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SOGA3--KIAA0408^ENST00000465254.2" ; transcript_name "KIAA0408-202" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SOGA3--KIAA0408 HAVANA gene 1301 11362 . + . FI_gene_label "SOGA3^ENSG00000214338.10" ; ID "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; exon_id "ENSE00003609368.1" ; exon_number 2 ; gene_id "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; gene_name SOGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166438.2" ; havana_transcript "OTTHUMT00000388286.1" ; hgnc_id "HGNC:21494" ; level 2 ; orig_coord_info "chr6,127515514,127516614,-" ; protein_id "ENSP00000435559.1" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "SOGA3--KIAA0408^ENST00000465909.2" ; transcript_name "SOGA3-201" ; transcript_support_level 5 ; transcript_type protein_coding
SOGA3--KIAA0408 HAVANA mRNA 1301 11362 . + . FI_gene_label "SOGA3^ENSG00000214338.10" ; ID "SOGA3--KIAA0408^ENST00000465909.2" ; Parent "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; exon_id "ENSE00003609368.1" ; exon_number 2 ; gene_id "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; gene_name SOGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166438.2" ; havana_transcript "OTTHUMT00000388286.1" ; hgnc_id "HGNC:21494" ; level 2 ; orig_coord_info "chr6,127515514,127516614,-" ; protein_id "ENSP00000435559.1" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "SOGA3--KIAA0408^ENST00000465909.2" ; transcript_name "SOGA3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
SYNCRIP--SNX14 HAVANA gene 22890 54175 . + . FI_gene_label "SNX14^ENSG00000135317.13" ; ID "SYNCRIP--SNX14^SNX14^ENSG00000135317.13" ; ccdsid "CCDS5004.1" ; exon_id "ENSE00002068092.2" ; exon_number 1 ; gene_id "SYNCRIP--SNX14^SNX14^ENSG00000135317.13" ; gene_name SNX14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015140.7" ; havana_transcript "OTTHUMT00000041393.3" ; hgnc_id "HGNC:14977" ; level 2 ; orig_coord_info "chr6,85593579,85593718,-" ; protein_id "ENSP00000313121.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "SYNCRIP--SNX14^ENST00000314673.8" ; transcript_name "SNX14-201" ; transcript_support_level 1 ; transcript_type protein_coding
SYNCRIP--SNX14 HAVANA mRNA 22890 54175 . + . FI_gene_label "SNX14^ENSG00000135317.13" ; ID "SYNCRIP--SNX14^ENST00000314673.8" ; Parent "SYNCRIP--SNX14^SNX14^ENSG00000135317.13" ; ccdsid "CCDS5004.1" ; exon_id "ENSE00002068092.2" ; exon_number 1 ; gene_id "SYNCRIP--SNX14^SNX14^ENSG00000135317.13" ; gene_name SNX14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015140.7" ; havana_transcript "OTTHUMT00000041393.3" ; hgnc_id "HGNC:14977" ; level 2 ; orig_coord_info "chr6,85593579,85593718,-" ; protein_id "ENSP00000313121.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "SYNCRIP--SNX14^ENST00000314673.8" ; transcript_name "SNX14-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SYNCRIP--SNX14 HAVANA gene 2073 19035 . + . FI_gene_label "SYNCRIP^ENSG00000135316.19" ; ID "SYNCRIP--SNX14^SYNCRIP^ENSG00000135316.19" ; ccdsid "CCDS55041.1" ; exon_id "ENSE00001450462.1" ; exon_number 2 ; gene_id "SYNCRIP--SNX14^SYNCRIP^ENSG00000135316.19" ; gene_name SYNCRIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000015141.5" ; havana_transcript "OTTHUMT00000041397.2" ; hgnc_id "HGNC:16918" ; level 2 ; orig_coord_info "chr6,85641292,85641439,-" ; protein_id "ENSP00000347380.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "SYNCRIP--SNX14^ENST00000355238.11" ; transcript_name "SYNCRIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
SYNCRIP--SNX14 HAVANA mRNA 2073 19035 . + . FI_gene_label "SYNCRIP^ENSG00000135316.19" ; ID "SYNCRIP--SNX14^ENST00000355238.11" ; Parent "SYNCRIP--SNX14^SYNCRIP^ENSG00000135316.19" ; ccdsid "CCDS55041.1" ; exon_id "ENSE00001450462.1" ; exon_number 2 ; gene_id "SYNCRIP--SNX14^SYNCRIP^ENSG00000135316.19" ; gene_name SYNCRIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000015141.5" ; havana_transcript "OTTHUMT00000041397.2" ; hgnc_id "HGNC:16918" ; level 2 ; orig_coord_info "chr6,85641292,85641439,-" ; protein_id "ENSP00000347380.6" ; tag basic appris_alternative_1 CCDS ; transcript_id "SYNCRIP--SNX14^ENST00000355238.11" ; transcript_name "SYNCRIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TCF7L2--AL158212.1 HAVANA gene 15542 23732 . + . FI_gene_label "TCF7L2^ENSG00000148737.17" ; ID "TCF7L2--AL158212.1^TCF7L2^ENSG00000148737.17" ; exon_id "ENSE00001738678.1" ; exon_number 1 ; gene_id "TCF7L2--AL158212.1^TCF7L2^ENSG00000148737.17" ; gene_name TCF7L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019070.11" ; havana_transcript "OTTHUMT00000050420.2" ; hgnc_id "HGNC:11641" ; level 2 ; orig_coord_info "chr10,113146072,113146097,+" ; protein_id "ENSP00000277945.7" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "TCF7L2--AL158212.1^ENST00000277945.11" ; transcript_name "TCF7L2-201" ; transcript_support_level 5 ; transcript_type protein_coding
TCF7L2--AL158212.1 HAVANA mRNA 15542 23732 . + . FI_gene_label "TCF7L2^ENSG00000148737.17" ; ID "TCF7L2--AL158212.1^ENST00000277945.11" ; Parent "TCF7L2--AL158212.1^TCF7L2^ENSG00000148737.17" ; exon_id "ENSE00001738678.1" ; exon_number 1 ; gene_id "TCF7L2--AL158212.1^TCF7L2^ENSG00000148737.17" ; gene_name TCF7L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019070.11" ; havana_transcript "OTTHUMT00000050420.2" ; hgnc_id "HGNC:11641" ; level 2 ; orig_coord_info "chr10,113146072,113146097,+" ; protein_id "ENSP00000277945.7" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "TCF7L2--AL158212.1^ENST00000277945.11" ; transcript_name "TCF7L2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
THAP12--ACO1 HAVANA gene 1001 14888 . + . FI_gene_label "THAP12^ENSG00000137492.8" ; ID "THAP12--ACO1^THAP12^ENSG00000137492.8" ; ccdsid "CCDS8243.1" ; exon_id "ENSE00000927649.4" ; exon_number 1 ; gene_id "THAP12--ACO1^THAP12^ENSG00000137492.8" ; gene_name THAP12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165280.2" ; havana_transcript "OTTHUMT00000383188.2" ; hgnc_id "HGNC:9440" ; level 2 ; orig_coord_info "chr11,76380748,76380836,-" ; protein_id "ENSP00000260045.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "THAP12--ACO1^ENST00000260045.8" ; transcript_name "THAP12-201" ; transcript_support_level 1 ; transcript_type protein_coding
THAP12--ACO1 HAVANA mRNA 1001 14888 . + . FI_gene_label "THAP12^ENSG00000137492.8" ; ID "THAP12--ACO1^ENST00000260045.8" ; Parent "THAP12--ACO1^THAP12^ENSG00000137492.8" ; ccdsid "CCDS8243.1" ; exon_id "ENSE00000927649.4" ; exon_number 1 ; gene_id "THAP12--ACO1^THAP12^ENSG00000137492.8" ; gene_name THAP12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165280.2" ; havana_transcript "OTTHUMT00000383188.2" ; hgnc_id "HGNC:9440" ; level 2 ; orig_coord_info "chr11,76380748,76380836,-" ; protein_id "ENSP00000260045.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "THAP12--ACO1^ENST00000260045.8" ; transcript_name "THAP12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
THAP12--ACO1 HAVANA gene 17929 44655 . + . FI_gene_label "ACO1^ENSG00000122729.19" ; ID "THAP12--ACO1^ACO1^ENSG00000122729.19" ; ccdsid "CCDS6525.1" ; exon_id "ENSE00003738356.1" ; exon_number 2 ; gene_id "THAP12--ACO1^ACO1^ENSG00000122729.19" ; gene_name ACO1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019740.4" ; havana_transcript "OTTHUMT00000051998.4" ; hgnc_id "HGNC:117" ; level 2 ; orig_coord_info "chr9,32405507,32405603,+" ; protein_id "ENSP00000309477.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "THAP12--ACO1^ENST00000309951.8" ; transcript_name "ACO1-201" ; transcript_support_level 1 ; transcript_type protein_coding
THAP12--ACO1 HAVANA mRNA 17929 44655 . + . FI_gene_label "ACO1^ENSG00000122729.19" ; ID "THAP12--ACO1^ENST00000309951.8" ; Parent "THAP12--ACO1^ACO1^ENSG00000122729.19" ; ccdsid "CCDS6525.1" ; exon_id "ENSE00003738356.1" ; exon_number 2 ; gene_id "THAP12--ACO1^ACO1^ENSG00000122729.19" ; gene_name ACO1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019740.4" ; havana_transcript "OTTHUMT00000051998.4" ; hgnc_id "HGNC:117" ; level 2 ; orig_coord_info "chr9,32405507,32405603,+" ; protein_id "ENSP00000309477.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "THAP12--ACO1^ENST00000309951.8" ; transcript_name "ACO1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMEM241--GREB1L HAVANA gene 30014 68964 . + . FI_gene_label "GREB1L^ENSG00000141449.15" ; ID "TMEM241--GREB1L^GREB1L^ENSG00000141449.15" ; exon_id "ENSE00003694289.1" ; exon_number 3 ; gene_id "TMEM241--GREB1L^GREB1L^ENSG00000141449.15" ; gene_name GREB1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000178892.3" ; havana_transcript "OTTHUMT00000443781.2" ; hgnc_id "HGNC:31042" ; level 2 ; orig_coord_info "chr18,21383519,21383675,+" ; protein_id "ENSP00000269218.6" ; tag basic ; transcript_id "TMEM241--GREB1L^ENST00000269218.10" ; transcript_name "GREB1L-201" ; transcript_support_level 5 ; transcript_type protein_coding
TMEM241--GREB1L HAVANA mRNA 30014 68964 . + . FI_gene_label "GREB1L^ENSG00000141449.15" ; ID "TMEM241--GREB1L^ENST00000269218.10" ; Parent "TMEM241--GREB1L^GREB1L^ENSG00000141449.15" ; exon_id "ENSE00003694289.1" ; exon_number 3 ; gene_id "TMEM241--GREB1L^GREB1L^ENSG00000141449.15" ; gene_name GREB1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000178892.3" ; havana_transcript "OTTHUMT00000443781.2" ; hgnc_id "HGNC:31042" ; level 2 ; orig_coord_info "chr18,21383519,21383675,+" ; protein_id "ENSP00000269218.6" ; tag basic ; transcript_id "TMEM241--GREB1L^ENST00000269218.10" ; transcript_name "GREB1L-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TMEM241--GREB1L HAVANA gene 1001 20378 . + . FI_gene_label "TMEM241^ENSG00000134490.14" ; ID "TMEM241--GREB1L^TMEM241^ENSG00000134490.14" ; ccdsid "CCDS11876.2" ; exon_id "ENSE00002168027.1" ; exon_number 1 ; gene_id "TMEM241--GREB1L^TMEM241^ENSG00000134490.14" ; gene_name TMEM241 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131771.8" ; havana_transcript "OTTHUMT00000254702.4" ; hgnc_id "HGNC:31723" ; level 2 ; orig_coord_info "chr18,23437781,23437852,-" ; protein_id "ENSP00000372720.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM241--GREB1L^ENST00000383233.8" ; transcript_name "TMEM241-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMEM241--GREB1L HAVANA mRNA 1001 20378 . + . FI_gene_label "TMEM241^ENSG00000134490.14" ; ID "TMEM241--GREB1L^ENST00000383233.8" ; Parent "TMEM241--GREB1L^TMEM241^ENSG00000134490.14" ; ccdsid "CCDS11876.2" ; exon_id "ENSE00002168027.1" ; exon_number 1 ; gene_id "TMEM241--GREB1L^TMEM241^ENSG00000134490.14" ; gene_name TMEM241 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131771.8" ; havana_transcript "OTTHUMT00000254702.4" ; hgnc_id "HGNC:31723" ; level 2 ; orig_coord_info "chr18,23437781,23437852,-" ; protein_id "ENSP00000372720.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM241--GREB1L^ENST00000383233.8" ; transcript_name "TMEM241-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRIP10--KDM4B HAVANA gene 14550 51270 . + . FI_gene_label "KDM4B^ENSG00000127663.15" ; ID "TRIP10--KDM4B^KDM4B^ENSG00000127663.15" ; ccdsid "CCDS12138.1" ; exon_id "ENSE00000874797.2" ; exon_number 3 ; gene_id "TRIP10--KDM4B^KDM4B^ENSG00000127663.15" ; gene_name KDM4B ; gene_type protein_coding ; havana_gene "OTTHUMG00000180281.5" ; havana_transcript "OTTHUMT00000450558.3" ; hgnc_id "HGNC:29136" ; level 2 ; orig_coord_info "chr19,5032891,5033031,+" ; protein_id "ENSP00000159111.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "TRIP10--KDM4B^ENST00000159111.9" ; transcript_name "KDM4B-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRIP10--KDM4B HAVANA mRNA 14550 51270 . + . FI_gene_label "KDM4B^ENSG00000127663.15" ; ID "TRIP10--KDM4B^ENST00000159111.9" ; Parent "TRIP10--KDM4B^KDM4B^ENSG00000127663.15" ; ccdsid "CCDS12138.1" ; exon_id "ENSE00000874797.2" ; exon_number 3 ; gene_id "TRIP10--KDM4B^KDM4B^ENSG00000127663.15" ; gene_name KDM4B ; gene_type protein_coding ; havana_gene "OTTHUMG00000180281.5" ; havana_transcript "OTTHUMT00000450558.3" ; hgnc_id "HGNC:29136" ; level 2 ; orig_coord_info "chr19,5032891,5033031,+" ; protein_id "ENSP00000159111.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "TRIP10--KDM4B^ENST00000159111.9" ; transcript_name "KDM4B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRIP10--KDM4B HAVANA gene 2756 11549 . + . FI_gene_label "TRIP10^ENSG00000125733.18" ; ID "TRIP10--KDM4B^TRIP10^ENSG00000125733.18" ; ccdsid "CCDS74271.1" ; exon_id "ENSE00003038028.1" ; exon_number 1 ; gene_id "TRIP10--KDM4B^TRIP10^ENSG00000125733.18" ; gene_name TRIP10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150255.6" ; havana_transcript "OTTHUMT00000317129.3" ; hgnc_id "HGNC:12304" ; level 2 ; orig_coord_info "chr19,6739762,6739785,+" ; protein_id "ENSP00000320117.7" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "TRIP10--KDM4B^ENST00000313244.14" ; transcript_name "TRIP10-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRIP10--KDM4B HAVANA mRNA 2756 11549 . + . FI_gene_label "TRIP10^ENSG00000125733.18" ; ID "TRIP10--KDM4B^ENST00000313244.14" ; Parent "TRIP10--KDM4B^TRIP10^ENSG00000125733.18" ; ccdsid "CCDS74271.1" ; exon_id "ENSE00003038028.1" ; exon_number 1 ; gene_id "TRIP10--KDM4B^TRIP10^ENSG00000125733.18" ; gene_name TRIP10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150255.6" ; havana_transcript "OTTHUMT00000317129.3" ; hgnc_id "HGNC:12304" ; level 2 ; orig_coord_info "chr19,6739762,6739785,+" ; protein_id "ENSP00000320117.7" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "TRIP10--KDM4B^ENST00000313244.14" ; transcript_name "TRIP10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WAC--SFMBT2 HAVANA gene 1821 22421 . + . FI_gene_label "WAC^ENSG00000095787.24" ; ID "WAC--SFMBT2^WAC^ENSG00000095787.24" ; ccdsid "CCDS7160.1" ; exon_id "ENSE00001823796.1" ; exon_number 1 ; gene_id "WAC--SFMBT2^WAC^ENSG00000095787.24" ; gene_name WAC ; gene_type protein_coding ; havana_gene "OTTHUMG00000017872.11" ; havana_transcript "OTTHUMT00000047360.4" ; hgnc_id "HGNC:17327" ; level 1 ; orig_coord_info "chr10,28533580,28533620,+" ; protein_id "ENSP00000311106.4" ; tag basic appris_alternative_1 exp_conf CCDS ; transcript_id "WAC--SFMBT2^ENST00000347934.8" ; transcript_name "WAC-202" ; transcript_support_level 5 ; transcript_type protein_coding
WAC--SFMBT2 HAVANA mRNA 1821 22421 . + . FI_gene_label "WAC^ENSG00000095787.24" ; ID "WAC--SFMBT2^ENST00000347934.8" ; Parent "WAC--SFMBT2^WAC^ENSG00000095787.24" ; ccdsid "CCDS7160.1" ; exon_id "ENSE00001823796.1" ; exon_number 1 ; gene_id "WAC--SFMBT2^WAC^ENSG00000095787.24" ; gene_name WAC ; gene_type protein_coding ; havana_gene "OTTHUMG00000017872.11" ; havana_transcript "OTTHUMT00000047360.4" ; hgnc_id "HGNC:17327" ; level 1 ; orig_coord_info "chr10,28533580,28533620,+" ; protein_id "ENSP00000311106.4" ; tag basic appris_alternative_1 exp_conf CCDS ; transcript_id "WAC--SFMBT2^ENST00000347934.8" ; transcript_name "WAC-202" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
WAC--SFMBT2 HAVANA gene 29617 59188 . + . FI_gene_label "SFMBT2^ENSG00000198879.12" ; ID "WAC--SFMBT2^SFMBT2^ENSG00000198879.12" ; ccdsid "CCDS31138.1" ; exon_id "ENSE00001215204.1" ; exon_number 2 ; gene_id "WAC--SFMBT2^SFMBT2^ENSG00000198879.12" ; gene_name SFMBT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017630.3" ; havana_transcript "OTTHUMT00000046673.1" ; hgnc_id "HGNC:20256" ; level 2 ; orig_coord_info "chr10,7381799,7381898,-" ; protein_id "ENSP00000355109.4" ; tag basic appris_principal_2 CCDS ; transcript_id "WAC--SFMBT2^ENST00000361972.8" ; transcript_name "SFMBT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
WAC--SFMBT2 HAVANA mRNA 29617 59188 . + . FI_gene_label "SFMBT2^ENSG00000198879.12" ; ID "WAC--SFMBT2^ENST00000361972.8" ; Parent "WAC--SFMBT2^SFMBT2^ENSG00000198879.12" ; ccdsid "CCDS31138.1" ; exon_id "ENSE00001215204.1" ; exon_number 2 ; gene_id "WAC--SFMBT2^SFMBT2^ENSG00000198879.12" ; gene_name SFMBT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017630.3" ; havana_transcript "OTTHUMT00000046673.1" ; hgnc_id "HGNC:20256" ; level 2 ; orig_coord_info "chr10,7381799,7381898,-" ; protein_id "ENSP00000355109.4" ; tag basic appris_principal_2 CCDS ; transcript_id "WAC--SFMBT2^ENST00000361972.8" ; transcript_name "SFMBT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZDHHC9--AL034405.1 HAVANA gene 1024 14946 . + . FI_gene_label "ZDHHC9^ENSG00000188706.13" ; ID "ZDHHC9--AL034405.1^ZDHHC9^ENSG00000188706.13" ; ccdsid "CCDS35395.1" ; exon_id "ENSE00001430041.1" ; exon_number 3 ; gene_id "ZDHHC9--AL034405.1^ZDHHC9^ENSG00000188706.13" ; gene_name ZDHHC9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022375.3" ; havana_transcript "OTTHUMT00000058213.2" ; hgnc_id "HGNC:18475" ; level 2 ; orig_coord_info "chrX,129841779,129841945,-" ; protein_id "ENSP00000349689.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZDHHC9--AL034405.1^ENST00000357166.11" ; transcript_name "ZDHHC9-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZDHHC9--AL034405.1 HAVANA mRNA 1024 14946 . + . FI_gene_label "ZDHHC9^ENSG00000188706.13" ; ID "ZDHHC9--AL034405.1^ENST00000357166.11" ; Parent "ZDHHC9--AL034405.1^ZDHHC9^ENSG00000188706.13" ; ccdsid "CCDS35395.1" ; exon_id "ENSE00001430041.1" ; exon_number 3 ; gene_id "ZDHHC9--AL034405.1^ZDHHC9^ENSG00000188706.13" ; gene_name ZDHHC9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022375.3" ; havana_transcript "OTTHUMT00000058213.2" ; hgnc_id "HGNC:18475" ; level 2 ; orig_coord_info "chrX,129841779,129841945,-" ; protein_id "ENSP00000349689.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZDHHC9--AL034405.1^ENST00000357166.11" ; transcript_name "ZDHHC9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF227--GAB2 HAVANA gene 2342 11885 . + . FI_gene_label "ZNF227^ENSG00000131115.16" ; ID "ZNF227--GAB2^ZNF227^ENSG00000131115.16" ; ccdsid "CCDS12636.1" ; exon_id "ENSE00002522182.1" ; exon_number 3 ; gene_id "ZNF227--GAB2^ZNF227^ENSG00000131115.16" ; gene_name ZNF227 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182352.3" ; havana_transcript "OTTHUMT00000460720.2" ; hgnc_id "HGNC:13020" ; level 2 ; orig_coord_info "chr19,44217793,44217852,+" ; protein_id "ENSP00000321049.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF227--GAB2^ENST00000313040.12" ; transcript_name "ZNF227-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF227--GAB2 HAVANA mRNA 2342 11885 . + . FI_gene_label "ZNF227^ENSG00000131115.16" ; ID "ZNF227--GAB2^ENST00000313040.12" ; Parent "ZNF227--GAB2^ZNF227^ENSG00000131115.16" ; ccdsid "CCDS12636.1" ; exon_id "ENSE00002522182.1" ; exon_number 3 ; gene_id "ZNF227--GAB2^ZNF227^ENSG00000131115.16" ; gene_name ZNF227 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182352.3" ; havana_transcript "OTTHUMT00000460720.2" ; hgnc_id "HGNC:13020" ; level 2 ; orig_coord_info "chr19,44217793,44217852,+" ; protein_id "ENSP00000321049.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF227--GAB2^ENST00000313040.12" ; transcript_name "ZNF227-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF227--GAB2 HAVANA gene 17677 34298 . + . FI_gene_label "GAB2^ENSG00000033327.13" ; ID "ZNF227--GAB2^GAB2^ENSG00000033327.13" ; ccdsid "CCDS8260.1" ; exon_id "ENSE00003464974.1" ; exon_number 2 ; gene_id "ZNF227--GAB2^GAB2^ENSG00000033327.13" ; gene_name GAB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166673.3" ; havana_transcript "OTTHUMT00000391084.1" ; hgnc_id "HGNC:14458" ; level 2 ; orig_coord_info "chr11,78280601,78280862,-" ; protein_id "ENSP00000343959.2" ; tag basic CCDS ; transcript_id "ZNF227--GAB2^ENST00000340149.6" ; transcript_name "GAB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF227--GAB2 HAVANA mRNA 17677 34298 . + . FI_gene_label "GAB2^ENSG00000033327.13" ; ID "ZNF227--GAB2^ENST00000340149.6" ; Parent "ZNF227--GAB2^GAB2^ENSG00000033327.13" ; ccdsid "CCDS8260.1" ; exon_id "ENSE00003464974.1" ; exon_number 2 ; gene_id "ZNF227--GAB2^GAB2^ENSG00000033327.13" ; gene_name GAB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166673.3" ; havana_transcript "OTTHUMT00000391084.1" ; hgnc_id "HGNC:14458" ; level 2 ; orig_coord_info "chr11,78280601,78280862,-" ; protein_id "ENSP00000343959.2" ; tag basic CCDS ; transcript_id "ZNF227--GAB2^ENST00000340149.6" ; transcript_name "GAB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF419--ZNF772 HAVANA gene 1040 9388 . + . FI_gene_label "ZNF419^ENSG00000105136.21" ; ID "ZNF419--ZNF772^ZNF419^ENSG00000105136.21" ; ccdsid "CCDS54326.1" ; exon_id "ENSE00002119234.1" ; exon_number 1 ; gene_id "ZNF419--ZNF772^ZNF419^ENSG00000105136.21" ; gene_name ZNF419 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037073.10" ; havana_transcript "OTTHUMT00000378506.1" ; hgnc_id "HGNC:20648" ; level 2 ; orig_coord_info "chr19,57487951,57487983,+" ; protein_id "ENSP00000221735.7" ; tag NAGNAG_splice_site basic MANE_Select appris_alternative_2 CCDS ; transcript_id "ZNF419--ZNF772^ENST00000221735.12" ; transcript_name "ZNF419-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF419--ZNF772 HAVANA mRNA 1040 9388 . + . FI_gene_label "ZNF419^ENSG00000105136.21" ; ID "ZNF419--ZNF772^ENST00000221735.12" ; Parent "ZNF419--ZNF772^ZNF419^ENSG00000105136.21" ; ccdsid "CCDS54326.1" ; exon_id "ENSE00002119234.1" ; exon_number 1 ; gene_id "ZNF419--ZNF772^ZNF419^ENSG00000105136.21" ; gene_name ZNF419 ; gene_type protein_coding ; havana_gene "OTTHUMG00000037073.10" ; havana_transcript "OTTHUMT00000378506.1" ; hgnc_id "HGNC:20648" ; level 2 ; orig_coord_info "chr19,57487951,57487983,+" ; protein_id "ENSP00000221735.7" ; tag NAGNAG_splice_site basic MANE_Select appris_alternative_2 CCDS ; transcript_id "ZNF419--ZNF772^ENST00000221735.12" ; transcript_name "ZNF419-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF419--ZNF772 HAVANA gene 12389 20373 . + . FI_gene_label "ZNF772^ENSG00000197128.12" ; ID "ZNF419--ZNF772^ZNF772^ENSG00000197128.12" ; ccdsid "CCDS33133.1" ; exon_id "ENSE00003691113.1" ; exon_number 1 ; gene_id "ZNF419--ZNF772^ZNF772^ENSG00000197128.12" ; gene_name ZNF772 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168007.3" ; havana_transcript "OTTHUMT00000397447.1" ; hgnc_id "HGNC:33106" ; level 2 ; orig_coord_info "chr19,57477277,57477309,-" ; protein_id "ENSP00000341165.4" ; tag basic appris_principal_4 CCDS ; transcript_id "ZNF419--ZNF772^ENST00000343280.8" ; transcript_name "ZNF772-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF419--ZNF772 HAVANA mRNA 12389 20373 . + . FI_gene_label "ZNF772^ENSG00000197128.12" ; ID "ZNF419--ZNF772^ENST00000343280.8" ; Parent "ZNF419--ZNF772^ZNF772^ENSG00000197128.12" ; ccdsid "CCDS33133.1" ; exon_id "ENSE00003691113.1" ; exon_number 1 ; gene_id "ZNF419--ZNF772^ZNF772^ENSG00000197128.12" ; gene_name ZNF772 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168007.3" ; havana_transcript "OTTHUMT00000397447.1" ; hgnc_id "HGNC:33106" ; level 2 ; orig_coord_info "chr19,57477277,57477309,-" ; protein_id "ENSP00000341165.4" ; tag basic appris_principal_4 CCDS ; transcript_id "ZNF419--ZNF772^ENST00000343280.8" ; transcript_name "ZNF772-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANTXR1--AC011897.1 HAVANA gene 41503 43848 . + . FI_gene_label "AC011897.1^ENSG00000228505.5" ; ID "ANTXR1--AC011897.1^AC011897.1^ENSG00000228505.5" ; exon_id "ENSE00001773060.1" ; exon_number 1 ; gene_id "ANTXR1--AC011897.1^AC011897.1^ENSG00000228505.5" ; gene_name "AC011897.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000151715.1" ; havana_transcript "OTTHUMT00000323611.1" ; level 2 ; orig_coord_info "chr2,14616428,14616485,+" ; transcript_id "ANTXR1--AC011897.1^ENST00000418481.1" ; transcript_name "AC011897.1-202" ; transcript_support_level 5 ; transcript_type lncRNA
ANTXR1--AC011897.1 HAVANA RNA 41503 43848 . + . FI_gene_label "AC011897.1^ENSG00000228505.5" ; ID "ANTXR1--AC011897.1^ENST00000418481.1" ; Parent "ANTXR1--AC011897.1^AC011897.1^ENSG00000228505.5" ; exon_id "ENSE00001773060.1" ; exon_number 1 ; gene_id "ANTXR1--AC011897.1^AC011897.1^ENSG00000228505.5" ; gene_name "AC011897.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000151715.1" ; havana_transcript "OTTHUMT00000323611.1" ; level 2 ; orig_coord_info "chr2,14616428,14616485,+" ; transcript_id "ANTXR1--AC011897.1^ENST00000418481.1" ; transcript_name "AC011897.1-202" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
ANTXR1--RN7SKP168 ENSEMBL gene 41503 41802 . + . FI_gene_label "RN7SKP168^ENSG00000222842.1" ; ID "ANTXR1--RN7SKP168^RN7SKP168^ENSG00000222842.1" ; exon_id "ENSE00001590728.1" ; exon_number 1 ; gene_id "ANTXR1--RN7SKP168^RN7SKP168^ENSG00000222842.1" ; gene_name RN7SKP168 ; gene_type misc_RNA ; hgnc_id "HGNC:45892" ; level 3 ; orig_coord_info "chr2,17122841,17123140,-" ; tag basic ; transcript_id "ANTXR1--RN7SKP168^ENST00000410910.1" ; transcript_name "RN7SKP168-201" ; transcript_support_level NA ; transcript_type misc_RNA
ANTXR1--RN7SKP168 ENSEMBL RNA 41503 41802 . + . FI_gene_label "RN7SKP168^ENSG00000222842.1" ; ID "ANTXR1--RN7SKP168^ENST00000410910.1" ; Parent "ANTXR1--RN7SKP168^RN7SKP168^ENSG00000222842.1" ; exon_id "ENSE00001590728.1" ; exon_number 1 ; gene_id "ANTXR1--RN7SKP168^RN7SKP168^ENSG00000222842.1" ; gene_name RN7SKP168 ; gene_type misc_RNA ; hgnc_id "HGNC:45892" ; level 3 ; orig_coord_info "chr2,17122841,17123140,-" ; tag basic ; transcript_id "ANTXR1--RN7SKP168^ENST00000410910.1" ; transcript_name "RN7SKP168-201" ; transcript_support_level NA ; transcript_type misc_RNA
L1 and L2 created:
ANTXR1--ZFYVE9P2 HAVANA gene 41503 42106 . + . FI_gene_label "ZFYVE9P2^ENSG00000214843.3" ; ID "ANTXR1--ZFYVE9P2^ZFYVE9P2^ENSG00000214843.3" ; exon_id "ENSE00001723705.1" ; exon_number 1 ; gene_id "ANTXR1--ZFYVE9P2^ZFYVE9P2^ENSG00000214843.3" ; gene_name ZFYVE9P2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000151762.1" ; havana_transcript "OTTHUMT00000323802.1" ; hgnc_id "HGNC:39046" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,17284292,17284895,+" ; tag pseudo_consens basic ; transcript_id "ANTXR1--ZFYVE9P2^ENST00000447321.1" ; transcript_name "ZFYVE9P2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
ANTXR1--ZFYVE9P2 HAVANA RNA 41503 42106 . + . FI_gene_label "ZFYVE9P2^ENSG00000214843.3" ; ID "ANTXR1--ZFYVE9P2^ENST00000447321.1" ; Parent "ANTXR1--ZFYVE9P2^ZFYVE9P2^ENSG00000214843.3" ; exon_id "ENSE00001723705.1" ; exon_number 1 ; gene_id "ANTXR1--ZFYVE9P2^ZFYVE9P2^ENSG00000214843.3" ; gene_name ZFYVE9P2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000151762.1" ; havana_transcript "OTTHUMT00000323802.1" ; hgnc_id "HGNC:39046" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,17284292,17284895,+" ; tag pseudo_consens basic ; transcript_id "ANTXR1--ZFYVE9P2^ENST00000447321.1" ; transcript_name "ZFYVE9P2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
CMIP--AP001970.1 HAVANA gene 40988 45913 . + . FI_gene_label "AP001970.1^ENSG00000254710.2" ; ID "CMIP--AP001970.1^AP001970.1^ENSG00000254710.2" ; exon_id "ENSE00002169312.1" ; exon_number 1 ; gene_id "CMIP--AP001970.1^AP001970.1^ENSG00000254710.2" ; gene_name "AP001970.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000166033.2" ; havana_transcript "OTTHUMT00000387548.2" ; level 2 ; orig_coord_info "chr11,123188802,123188936,+" ; tag basic TAGENE ; transcript_id "CMIP--AP001970.1^ENST00000531681.2" ; transcript_name "AP001970.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
CMIP--AP001970.1 HAVANA RNA 40988 45913 . + . FI_gene_label "AP001970.1^ENSG00000254710.2" ; ID "CMIP--AP001970.1^ENST00000531681.2" ; Parent "CMIP--AP001970.1^AP001970.1^ENSG00000254710.2" ; exon_id "ENSE00002169312.1" ; exon_number 1 ; gene_id "CMIP--AP001970.1^AP001970.1^ENSG00000254710.2" ; gene_name "AP001970.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000166033.2" ; havana_transcript "OTTHUMT00000387548.2" ; level 2 ; orig_coord_info "chr11,123188802,123188936,+" ; tag basic TAGENE ; transcript_id "CMIP--AP001970.1^ENST00000531681.2" ; transcript_name "AP001970.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
CMIP--U8 ENSEMBL gene 40988 41115 . + . FI_gene_label "U8^ENSG00000212144.1" ; ID "CMIP--U8^U8^ENSG00000212144.1" ; exon_id "ENSE00001508626.1" ; exon_number 1 ; gene_id "CMIP--U8^U8^ENSG00000212144.1" ; gene_name U8 ; gene_type snoRNA ; level 3 ; orig_coord_info "chr1,234593275,234593402,+" ; tag basic ; transcript_id "CMIP--U8^ENST00000390842.1" ; transcript_name "U8.13-201" ; transcript_support_level NA ; transcript_type snoRNA
CMIP--U8 ENSEMBL RNA 40988 41115 . + . FI_gene_label "U8^ENSG00000212144.1" ; ID "CMIP--U8^ENST00000390842.1" ; Parent "CMIP--U8^U8^ENSG00000212144.1" ; exon_id "ENSE00001508626.1" ; exon_number 1 ; gene_id "CMIP--U8^U8^ENSG00000212144.1" ; gene_name U8 ; gene_type snoRNA ; level 3 ; orig_coord_info "chr1,234593275,234593402,+" ; tag basic ; transcript_id "CMIP--U8^ENST00000390842.1" ; transcript_name "U8.13-201" ; transcript_support_level NA ; transcript_type snoRNA
L1 and L2 created:
DDX1--AC068286.1 HAVANA gene 30552 33018 . + . FI_gene_label "AC068286.1^ENSG00000235127.1" ; ID "DDX1--AC068286.1^AC068286.1^ENSG00000235127.1" ; exon_id "ENSE00001750069.1" ; exon_number 1 ; gene_id "DDX1--AC068286.1^AC068286.1^ENSG00000235127.1" ; gene_name "AC068286.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000151726.1" ; havana_transcript "OTTHUMT00000323666.1" ; level 2 ; orig_coord_info "chr2,14907573,14907664,-" ; tag basic ; transcript_id "DDX1--AC068286.1^ENST00000416173.1" ; transcript_name "AC068286.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
DDX1--AC068286.1 HAVANA RNA 30552 33018 . + . FI_gene_label "AC068286.1^ENSG00000235127.1" ; ID "DDX1--AC068286.1^ENST00000416173.1" ; Parent "DDX1--AC068286.1^AC068286.1^ENSG00000235127.1" ; exon_id "ENSE00001750069.1" ; exon_number 1 ; gene_id "DDX1--AC068286.1^AC068286.1^ENSG00000235127.1" ; gene_name "AC068286.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000151726.1" ; havana_transcript "OTTHUMT00000323666.1" ; level 2 ; orig_coord_info "chr2,14907573,14907664,-" ; tag basic ; transcript_id "DDX1--AC068286.1^ENST00000416173.1" ; transcript_name "AC068286.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
HERC2--AC018362.1 HAVANA gene 89849 90822 . + . FI_gene_label "AC018362.1^ENSG00000261684.2" ; ID "HERC2--AC018362.1^AC018362.1^ENSG00000261684.2" ; exon_id "ENSE00002615376.1" ; exon_number 1 ; gene_id "HERC2--AC018362.1^AC018362.1^ENSG00000261684.2" ; gene_name "AC018362.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000173437.2" ; havana_transcript "OTTHUMT00000423119.1" ; level 2 ; orig_coord_info "chr15,42532330,42532840,-" ; tag dotter_confirmed ; transcript_id "HERC2--AC018362.1^ENST00000564805.1" ; transcript_name "AC018362.1-202" ; transcript_support_level 5 ; transcript_type lncRNA
HERC2--AC018362.1 HAVANA RNA 89849 90822 . + . FI_gene_label "AC018362.1^ENSG00000261684.2" ; ID "HERC2--AC018362.1^ENST00000564805.1" ; Parent "HERC2--AC018362.1^AC018362.1^ENSG00000261684.2" ; exon_id "ENSE00002615376.1" ; exon_number 1 ; gene_id "HERC2--AC018362.1^AC018362.1^ENSG00000261684.2" ; gene_name "AC018362.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000173437.2" ; havana_transcript "OTTHUMT00000423119.1" ; level 2 ; orig_coord_info "chr15,42532330,42532840,-" ; tag dotter_confirmed ; transcript_id "HERC2--AC018362.1^ENST00000564805.1" ; transcript_name "AC018362.1-202" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TCF7L2--AL158212.1 HAVANA gene 28779 31093 . + . FI_gene_label "AL158212.1^ENSG00000225292.2" ; ID "TCF7L2--AL158212.1^AL158212.1^ENSG00000225292.2" ; exon_id "ENSE00001736417.2" ; exon_number 1 ; gene_id "TCF7L2--AL158212.1^AL158212.1^ENSG00000225292.2" ; gene_name "AL158212.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000019067.2" ; havana_transcript "OTTHUMT00000050408.2" ; level 2 ; orig_coord_info "chr10,112888735,112888807,+" ; tag basic ; transcript_id "TCF7L2--AL158212.1^ENST00000428766.2" ; transcript_name "AL158212.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TCF7L2--AL158212.1 HAVANA RNA 28779 31093 . + . FI_gene_label "AL158212.1^ENSG00000225292.2" ; ID "TCF7L2--AL158212.1^ENST00000428766.2" ; Parent "TCF7L2--AL158212.1^AL158212.1^ENSG00000225292.2" ; exon_id "ENSE00001736417.2" ; exon_number 1 ; gene_id "TCF7L2--AL158212.1^AL158212.1^ENSG00000225292.2" ; gene_name "AL158212.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000019067.2" ; havana_transcript "OTTHUMT00000050408.2" ; level 2 ; orig_coord_info "chr10,112888735,112888807,+" ; tag basic ; transcript_id "TCF7L2--AL158212.1^ENST00000428766.2" ; transcript_name "AL158212.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
ZDHHC9--AL034405.1 HAVANA gene 17947 23738 . + . FI_gene_label "AL034405.1^ENSG00000235189.2" ; ID "ZDHHC9--AL034405.1^AL034405.1^ENSG00000235189.2" ; exon_id "ENSE00001623829.1" ; exon_number 1 ; gene_id "ZDHHC9--AL034405.1^AL034405.1^ENSG00000235189.2" ; gene_name "AL034405.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000022377.2" ; havana_transcript "OTTHUMT00000058219.1" ; level 1 ; orig_coord_info "chrX,129957461,129957528,-" ; tag basic exp_conf ; transcript_id "ZDHHC9--AL034405.1^ENST00000432062.1" ; transcript_name "AL034405.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
ZDHHC9--AL034405.1 HAVANA RNA 17947 23738 . + . FI_gene_label "AL034405.1^ENSG00000235189.2" ; ID "ZDHHC9--AL034405.1^ENST00000432062.1" ; Parent "ZDHHC9--AL034405.1^AL034405.1^ENSG00000235189.2" ; exon_id "ENSE00001623829.1" ; exon_number 1 ; gene_id "ZDHHC9--AL034405.1^AL034405.1^ENSG00000235189.2" ; gene_name "AL034405.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000022377.2" ; havana_transcript "OTTHUMT00000058219.1" ; level 1 ; orig_coord_info "chrX,129957461,129957528,-" ; tag basic exp_conf ; transcript_id "ZDHHC9--AL034405.1^ENST00000432062.1" ; transcript_name "AL034405.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
1009 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 1 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
2291 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 1 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 72 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 2 second) ------
GFF3 file parsed