#!/bin/bash -euo pipefail
FusionInspector \
--fusions A673_FFPE_RNA_0001_B23LG7FLT4_3.fusionreport.tsv \
--genome_lib ctat_genome_lib_build_dir \
--left_fq A673_FFPE_RNA_0001_B23LG7FLT4_3_1.fastp.fastq.gz --right_fq A673_FFPE_RNA_0001_B23LG7FLT4_3_2.fastp.fastq.gz \
--CPU 8 \
-O . \
--out_prefix A673_FFPE_RNA_0001_B23LG7FLT4_3 \
--vis --annotate --examine_coding_effect
cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR":
STAR-Fusion: $(STAR-Fusion --version 2>&1 | grep -i 'version' | sed 's/STAR-Fusion version: //')
END_VERSIONS