.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT (A673_FFPE_RNA_0001_B23LG7FLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/b62236618b1df538d81b4aebd12cd0/.command.log
Size: 1.2 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT (A673_FFPE_RNA_0001_B23LG7FLT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/10969d152b67b7bff931c3629f53c6/A673_FFPE_RNA_0001_B23LG7FLT4_1.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/b62236618b1df538d81b4aebd12cd0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/1aefd3b3f956d69c2b6dc48da48593/A673_FFPE_RNA_0001_B23LG7FLT4_1.fusions.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/1aefd3b3f956d69c2b6dc48da48593/A673_FFPE_RNA_0001_B23LG7FLT4_1_fusionreport_index.html
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/hgnc/hgnc_complete_set.txt
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/hgnc/HGNC-DB-timestamp.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/773afeab2c42db221419cace5f22dc/A673_FFPE_RNA_0001_B23LG7FLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/6b00395483f4902fc346076cb01524/A673_FFPE_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.abridged.tsv.annotated.coding_effect
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/b62236618b1df538d81b4aebd12cd0/.command.run
==> STAGING COMPLETE (9 inputs)