Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/fe6be0afd233563a374fa5f66e9f3b/ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1_1.fastp.fastq.gz Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/b6b14176c7d694cac572e562d1258c/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/b6b14176c7d694cac572e562d1258c/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/fe6be0afd233563a374fa5f66e9f3b/ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1_2.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/79d41d845d919e12d76bc84f4807d2/ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1.Chimeric.out.junction ==> STAGING COMPLETE (6 inputs) -ctat genome lib [/tmp/nxf.mRecrwSqmA/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.mRecrwSqmA/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary -sample contains 108305891 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.mRecrwSqmA/ctat_genome_lib_build_dir -J /tmp/nxf.mRecrwSqmA/ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1.Chimeric.out.junction -O /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.mRecrwSqmA/ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1.Chimeric.out.junction -building interval tree based on /tmp/nxf.mRecrwSqmA/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.08 min). -mapping reads to genes [10000], rate=23076.92/min [20000], rate=28571.43/min [30000], rate=29508.20/min [40000], rate=28235.29/min [50000], rate=27777.78/min [60000], rate=28800.00/min [70000], rate=28965.52/min [80000], rate=29447.85/min [90000], rate=30681.82/min [100000], rate=31746.03/min [110000], rate=32038.83/min [120000], rate=33179.72/min [130000], rate=33620.69/min [140000], rate=34567.90/min [150000], rate=35294.12/min [160000], rate=34285.71/min [170000], rate=32484.08/min [180000], rate=30857.14/min [190000], rate=30400.00/min [200000], rate=30075.19/min [210000], rate=29857.82/min [220000], rate=30000.00/min [230000], rate=29805.62/min [240000], rate=29875.52/min [250000], rate=30364.37/min [260000], rate=30409.36/min [270000], rate=30740.04/min [280000], rate=31168.83/min [290000], rate=31464.74/min [300000], rate=31634.45/min [310000], rate=31632.65/min [320000], rate=31372.55/min [330000], rate=31730.77/min [340000], rate=32125.98/min [350000], rate=32608.70/min [360000], rate=32876.71/min [370000], rate=33383.46/min [380000], rate=33827.89/min [390000], rate=34411.76/min [400000], rate=34090.91/min [410000], rate=33606.56/min [420000], rate=33070.87/min [430000], rate=32330.83/min [440000], rate=31922.61/min [450000], rate=31690.14/min [460000], rate=31292.52/min [470000], rate=31263.86/min [480000], rate=31067.96/min [490000], rate=31012.66/min [500000], rate=31023.78/min [510000], rate=30940.34/min [520000], rate=30952.38/min [530000], rate=30933.85/min [540000], rate=31153.85/min [550000], rate=31250.00/min [560000], rate=31431.24/min [570000], rate=31608.13/min [580000], rate=31636.36/min [590000], rate=31978.32/min [600000], rate=32114.18/min [610000], rate=32360.74/min [620000], rate=32517.48/min [630000], rate=32614.32/min [640000], rate=32876.71/min [650000], rate=33078.88/min [660000], rate=33305.30/min [670000], rate=32977.85/min [680000], rate=32718.52/min [690000], rate=32343.75/min [700000], rate=32061.07/min [710000], rate=31649.33/min [720000], rate=31555.88/min [730000], rate=31533.48/min [740000], rate=31489.36/min [750000], rate=31556.80/min [760000], rate=31448.28/min [770000], rate=31535.84/min [780000], rate=31643.00/min [790000], rate=31495.02/min [800000], rate=31558.19/min [810000], rate=31537.96/min [820000], rate=31599.23/min [830000], rate=31578.95/min [840000], rate=31578.95/min [850000], rate=31559.41/min [860000], rate=31695.33/min [870000], rate=31829.27/min [880000], rate=31922.61/min [890000], rate=31995.21/min [900000], rate=32181.17/min [910000], rate=32326.82/min [920000], rate=32470.59/min [930000], rate=32460.73/min [940000], rate=32525.95/min [950000], rate=32702.24/min [960000], rate=32857.96/min [970000], rate=32993.20/min [980000], rate=32996.63/min [990000], rate=32926.83/min [1000000], rate=32930.85/min [1010000], rate=32899.02/min [1020000], rate=32885.55/min [1030000], rate=32802.55/min [1040000], rate=32824.83/min [1050000], rate=32915.36/min [1060000], rate=33021.81/min [1070000], rate=33109.85/min [1080000], rate=33213.74/min [1090000], rate=33299.39/min [1100000], rate=33417.72/min [1110000], rate=33534.74/min [1120000], rate=33684.21/min [1130000], rate=33866.13/min [1140000], rate=34080.72/min [1150000], rate=34345.45/min [1160000], rate=34523.81/min [1170000], rate=34666.67/min [1180000], rate=34722.90/min [1190000], rate=34727.63/min [1200000], rate=34749.03/min [1210000], rate=34820.14/min [1220000], rate=34741.34/min [1230000], rate=34582.94/min [1240000], rate=34669.15/min [1250000], rate=34690.10/min [1260000], rate=34710.74/min [1270000], rate=34667.88/min [1280000], rate=34766.86/min [1290000], rate=34880.58/min [1300000], rate=34977.58/min [1310000], rate=34933.33/min [1320000], rate=35013.26/min [1330000], rate=35107.79/min [1340000], rate=35216.82/min [1350000], rate=35417.58/min [1360000], rate=35571.05/min [1370000], rate=35723.60/min [1380000], rate=35875.22/min [1390000], rate=36025.92/min [1400000], rate=36222.51/min [1410000], rate=36231.26/min [1420000], rate=36178.34/min [1430000], rate=36233.11/min [1440000], rate=36226.42/min [1450000], rate=36250.00/min [1460000], rate=36258.28/min [1470000], rate=36326.19/min [1480000], rate=36423.30/min [1490000], rate=36489.80/min [1500000], rate=36585.37/min [1510000], rate=36680.16/min [1520000], rate=36789.03/min [1530000], rate=36911.94/min [1540000], rate=37034.07/min [1550000], rate=37185.13/min [1560000], rate=37335.46/min [1570000], rate=37410.64/min [1580000], rate=37529.69/min [1590000], rate=37677.73/min -building interval tree based on /tmp/nxf.mRecrwSqmA/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=37500.00/min [20000], rate=42857.14/min [30000], rate=47368.42/min [40000], rate=43636.36/min [50000], rate=45454.55/min [60000], rate=45000.00/min [70000], rate=43298.97/min [80000], rate=41739.13/min [90000], rate=42519.69/min [100000], rate=43478.26/min [110000], rate=44594.59/min [120000], rate=44444.44/min [130000], rate=44827.59/min [140000], rate=45901.64/min [150000], rate=46875.00/min [160000], rate=42666.67/min [170000], rate=41632.65/min [180000], rate=41221.37/min [190000], rate=40569.40/min [200000], rate=40268.46/min [210000], rate=40384.62/min [220000], rate=40243.90/min [230000], rate=40350.88/min [240000], rate=40793.20/min [250000], rate=41436.46/min [260000], rate=41379.31/min [270000], rate=41326.53/min [280000], rate=41277.64/min [290000], rate=41726.62/min [300000], rate=42857.14/min [310000], rate=43867.92/min [320000], rate=43636.36/min [330000], rate=44098.00/min [340000], rate=44736.84/min [350000], rate=45652.17/min [360000], rate=46854.66/min [370000], rate=48156.18/min [380000], rate=48717.95/min [390000], rate=49159.66/min [400000], rate=48879.84/min [410000], rate=47490.35/min [420000], rate=45901.64/min [430000], rate=45422.54/min [440000], rate=45051.19/min [450000], rate=44701.99/min [460000], rate=43879.17/min [470000], rate=44131.46/min [480000], rate=44651.16/min [490000], rate=44277.11/min [500000], rate=43604.65/min [510000], rate=43159.38/min [520000], rate=43213.30/min [530000], rate=43442.62/min [540000], rate=43607.00/min [550000], rate=43650.79/min [560000], rate=43807.04/min [570000], rate=44129.03/min [580000], rate=44387.76/min [590000], rate=44416.56/min [600000], rate=44389.64/min [610000], rate=43884.89/min [620000], rate=43055.56/min [630000], rate=42234.64/min [640000], rate=42244.22/min [650000], rate=41800.64/min [660000], rate=41078.84/min [670000], rate=40483.38/min [680000], rate=40000.00/min [690000], rate=39922.85/min [700000], rate=39810.43/min [710000], rate=39627.91/min [720000], rate=39779.01/min [730000], rate=39963.50/min [740000], rate=39501.78/min [750000], rate=39404.55/min [760000], rate=39208.94/min [770000], rate=39252.34/min [780000], rate=39360.81/min [790000], rate=39368.77/min [800000], rate=39344.26/min [810000], rate=39225.18/min [820000], rate=38985.74/min [830000], rate=39058.82/min [840000], rate=39130.43/min [850000], rate=39140.45/min [860000], rate=39209.73/min [870000], rate=39189.19/min [880000], rate=39169.14/min [890000], rate=38921.28/min [900000], rate=39073.81/min [910000], rate=39167.86/min [920000], rate=39038.19/min [930000], rate=39020.98/min [940000], rate=38869.75/min [950000], rate=38881.31/min [960000], rate=38945.23/min [970000], rate=39008.04/min [980000], rate=39121.76/min [990000], rate=39104.67/min [1000000], rate=39113.43/min [1010000], rate=39325.11/min [1020000], rate=39255.93/min [1030000], rate=39089.18/min [1040000], rate=39048.81/min [1050000], rate=38985.15/min [1060000], rate=38922.89/min [1070000], rate=38791.54/min [1080000], rate=38594.40/min [1090000], rate=38721.14/min [1100000], rate=38869.26/min [1110000], rate=38970.16/min [1120000], rate=39138.03/min [1130000], rate=39281.58/min [1140000], rate=39242.69/min [1150000], rate=38504.46/min [1160000], rate=37991.27/min [1170000], rate=37360.30/min [1180000], rate=37029.29/min [1190000], rate=36766.22/min [1200000], rate=36566.79/min [1210000], rate=36281.86/min [1220000], rate=36166.01/min [1230000], rate=36088.02/min [1240000], rate=35976.79/min [1250000], rate=35936.75/min [1260000], rate=36017.15/min [1270000], rate=36028.37/min [1280000], rate=35971.90/min [1290000], rate=35933.15/min [1300000], rate=35862.07/min [1310000], rate=35857.66/min [1320000], rate=35918.37/min [1330000], rate=35945.95/min [1340000], rate=35828.88/min [1350000], rate=35840.71/min [1360000], rate=35773.78/min [1370000], rate=35754.68/min [1380000], rate=35797.67/min [1390000], rate=35793.99/min [1400000], rate=35851.47/min [1410000], rate=35954.10/min [1420000], rate=36040.61/min [1430000], rate=36141.53/min [1440000], rate=36256.82/min [1450000], rate=36250.00/min [1460000], rate=36183.40/min [1470000], rate=36221.77/min [1480000], rate=36274.51/min [1490000], rate=36474.91/min [1500000], rate=36511.16/min [1510000], rate=36620.86/min [1520000], rate=36729.76/min [1530000], rate=36823.10/min [1540000], rate=36945.22/min [1550000], rate=36890.12/min [1560000], rate=36619.72/min [1570000], rate=36441.01/min [1580000], rate=36307.93/min -building interval tree based on /tmp/nxf.mRecrwSqmA/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.10 min). -mapping reads to genes [10000], rate=12765.96/min [20000], rate=13636.36/min [30000], rate=15254.24/min [40000], rate=16901.41/min [50000], rate=17647.06/min [60000], rate=18274.11/min [70000], rate=19090.91/min [80000], rate=19433.20/min [90000], rate=19014.08/min [100000], rate=18867.92/min [110000], rate=19526.63/min [120000], rate=19618.53/min [130000], rate=20155.04/min [140000], rate=20792.08/min [150000], rate=21126.76/min [160000], rate=21768.71/min [170000], rate=22173.91/min [180000], rate=22689.08/min [190000], rate=23076.92/min [200000], rate=23437.50/min [210000], rate=23908.92/min [220000], rate=24535.32/min [230000], rate=24954.79/min [240000], rate=25668.45/min [250000], rate=26362.04/min [260000], rate=26218.49/min [270000], rate=25391.85/min [280000], rate=24489.80/min [290000], rate=23868.31/min [300000], rate=23591.09/min [310000], rate=23484.85/min [320000], rate=23558.28/min [330000], rate=23404.26/min [340000], rate=23448.28/min [350000], rate=23516.24/min [360000], rate=23351.35/min [370000], rate=23591.92/min [380000], rate=23849.37/min [390000], rate=23901.94/min [400000], rate=24000.00/min [410000], rate=24165.03/min [420000], rate=24418.60/min [430000], rate=24641.83/min [440000], rate=24858.76/min [450000], rate=25046.38/min [460000], rate=25113.74/min [470000], rate=25156.11/min [480000], rate=25130.89/min [490000], rate=25257.73/min [500000], rate=25445.29/min [510000], rate=25500.00/min [520000], rate=25657.89/min [530000], rate=25790.75/min [540000], rate=26045.02/min [550000], rate=26232.11/min [560000], rate=26540.28/min [570000], rate=26865.67/min [580000], rate=26934.98/min [590000], rate=27105.67/min [600000], rate=27293.40/min [610000], rate=27539.50/min [620000], rate=27719.82/min [630000], rate=27979.27/min [640000], rate=28029.20/min [650000], rate=27997.13/min [660000], rate=28005.66/min [670000], rate=28170.99/min [680000], rate=28353.02/min [690000], rate=28375.60/min [700000], rate=28571.43/min [710000], rate=28783.78/min [720000], rate=28954.42/min [730000], rate=29102.99/min [740000], rate=29172.14/min [750000], rate=29258.78/min [760000], rate=29362.52/min [770000], rate=29539.64/min [780000], rate=29827.92/min [790000], rate=30133.50/min [800000], rate=30341.34/min [810000], rate=30527.64/min [820000], rate=30635.12/min [830000], rate=30874.15/min [840000], rate=31015.38/min [850000], rate=31059.68/min [860000], rate=31253.79/min [870000], rate=31370.19/min [880000], rate=31372.55/min [890000], rate=31356.43/min [900000], rate=31431.90/min [910000], rate=31560.69/min [920000], rate=31742.38/min [930000], rate=32032.15/min [940000], rate=32228.57/min [950000], rate=32349.60/min [960000], rate=32395.95/min [970000], rate=32532.14/min [980000], rate=32757.66/min [990000], rate=32817.68/min [1000000], rate=32985.16/min [1010000], rate=33132.86/min [1020000], rate=33188.72/min [1030000], rate=33190.12/min [1040000], rate=33280.00/min [1050000], rate=33421.75/min [1060000], rate=33508.96/min [1070000], rate=33683.11/min [1080000], rate=33855.80/min [1090000], rate=33974.03/min [1100000], rate=34143.82/min [1110000], rate=34206.47/min [1120000], rate=34303.22/min [1130000], rate=34433.72/min [1140000], rate=34493.19/min [1150000], rate=34569.14/min [1160000], rate=34765.23/min [1170000], rate=34804.16/min [1180000], rate=34739.94/min [1190000], rate=34778.37/min [1200000], rate=34849.95/min [1210000], rate=34954.26/min [1220000], rate=35023.92/min [1230000], rate=35142.86/min [1240000], rate=35294.12/min [1250000], rate=35377.36/min [1260000], rate=35443.04/min [1270000], rate=35458.35/min [1280000], rate=35473.44/min [1290000], rate=35472.04/min [1300000], rate=35278.15/min [1310000], rate=34948.87/min [1320000], rate=34752.08/min [1330000], rate=34605.38/min [1340000], rate=34491.63/min [1350000], rate=34351.15/min [1360000], rate=34228.19/min [1370000], rate=34023.18/min [1380000], rate=33795.92/min [1390000], rate=33710.59/min [1400000], rate=33600.00/min [1410000], rate=33624.80/min [1420000], rate=33702.53/min [1430000], rate=33739.68/min [1440000], rate=33816.05/min [1450000], rate=33838.97/min [1460000], rate=33861.62/min [1470000], rate=33949.19/min [1480000], rate=33983.93/min [1490000], rate=33979.48/min [1500000], rate=34039.33/min [1510000], rate=34111.45/min [1520000], rate=34221.39/min [1530000], rate=34343.43/min [1540000], rate=34464.75/min [1550000], rate=34585.35/min [1560000], rate=34718.10/min [1570000], rate=34811.53/min [1580000], rate=34750.73/min [1590000], rate=34741.44/min -building interval tree based on /tmp/nxf.mRecrwSqmA/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.10 min). -mapping reads to genes [10000], rate=60000.00/min [20000], rate=57142.86/min [30000], rate=58064.52/min [40000], rate=63157.89/min [50000], rate=63829.79/min [60000], rate=67924.53/min [70000], rate=71186.44/min [80000], rate=71641.79/min [90000], rate=71052.63/min [100000], rate=71428.57/min [110000], rate=70967.74/min [120000], rate=72727.27/min [130000], rate=74285.71/min [140000], rate=75000.00/min [150000], rate=72000.00/min [160000], rate=72727.27/min [170000], rate=74452.55/min [180000], rate=74482.76/min [190000], rate=76510.07/min [200000], rate=76433.12/min [210000], rate=76829.27/min [220000], rate=76744.19/min [230000], rate=73015.87/min [240000], rate=70935.96/min [250000], rate=72463.77/min [260000], rate=73239.44/min [270000], rate=73303.17/min [280000], rate=73362.45/min [290000], rate=74678.11/min [300000], rate=74688.80/min [310000], rate=74103.59/min [320000], rate=72452.83/min [330000], rate=73062.73/min [340000], rate=72857.14/min [350000], rate=71672.35/min [360000], rate=72483.22/min [370000], rate=70476.19/min [380000], rate=69724.77/min [390000], rate=70481.93/min [400000], rate=70588.24/min [410000], rate=68907.56/min [420000], rate=60287.08/min [430000], rate=53305.79/min [440000], rate=48175.18/min [450000], rate=44481.05/min [460000], rate=41317.37/min [470000], rate=38789.55/min [480000], rate=36734.69/min [490000], rate=35294.12/min [500000], rate=33860.05/min [510000], rate=32380.95/min [520000], rate=31515.15/min [530000], rate=30430.62/min [540000], rate=29401.09/min [550000], rate=28645.83/min [560000], rate=27814.57/min [570000], rate=27099.84/min [580000], rate=26687.12/min [590000], rate=26358.90/min [600000], rate=26181.82/min [610000], rate=26049.82/min [620000], rate=25995.81/min [630000], rate=25961.54/min [640000], rate=25876.01/min [650000], rate=25725.59/min [660000], rate=25581.40/min [670000], rate=25556.26/min [680000], rate=25373.13/min [690000], rate=25336.60/min [700000], rate=25362.32/min [710000], rate=25372.25/min [720000], rate=25381.90/min [730000], rate=25347.22/min [740000], rate=25356.94/min [750000], rate=25366.40/min [760000], rate=25361.51/min [770000], rate=25454.55/min [780000], rate=25587.75/min [790000], rate=25677.14/min [800000], rate=25834.23/min [810000], rate=25975.41/min [820000], rate=26128.52/min [830000], rate=26321.35/min [840000], rate=26512.36/min [850000], rate=26562.50/min [860000], rate=26749.61/min [870000], rate=26921.09/min [880000], rate=27021.49/min [890000], rate=27106.60/min [900000], rate=27162.98/min [910000], rate=27218.34/min [920000], rate=27299.70/min [930000], rate=27406.68/min [940000], rate=27525.62/min [950000], rate=27629.67/min [960000], rate=27785.82/min [970000], rate=27900.29/min [980000], rate=28000.00/min [990000], rate=28032.09/min [1000000], rate=28169.01/min [1010000], rate=28238.58/min [1020000], rate=28307.12/min [1030000], rate=28361.63/min [1040000], rate=28467.15/min [1050000], rate=28584.39/min [1060000], rate=28752.26/min [1070000], rate=28931.95/min [1080000], rate=29110.51/min [1090000], rate=29287.95/min [1100000], rate=29255.32/min [1110000], rate=29146.61/min [1120000], rate=29090.91/min [1130000], rate=29123.71/min [1140000], rate=28970.78/min [1150000], rate=28906.58/min [1160000], rate=28855.72/min [1170000], rate=28888.89/min [1180000], rate=28933.39/min [1190000], rate=28906.88/min [1200000], rate=28880.87/min [1210000], rate=28866.80/min [1220000], rate=28909.95/min [1230000], rate=28941.18/min [1240000], rate=28938.16/min [1250000], rate=28979.91/min [1260000], rate=28998.85/min [1270000], rate=29017.52/min [1280000], rate=29101.93/min [1290000], rate=29130.60/min [1300000], rate=29202.55/min [1310000], rate=29317.42/min [1320000], rate=29420.51/min [1330000], rate=29522.75/min [1340000], rate=29624.17/min [1350000], rate=29713.87/min [1360000], rate=29824.56/min [1370000], rate=29945.36/min [1380000], rate=30087.21/min [1390000], rate=30162.75/min [1400000], rate=30096.74/min [1410000], rate=30031.95/min [1420000], rate=30021.14/min [1430000], rate=30031.50/min [1440000], rate=30052.17/min [1450000], rate=30103.81/min [1460000], rate=30165.29/min [1470000], rate=30205.48/min [1480000], rate=30255.54/min [1490000], rate=30284.55/min [1500000], rate=30343.90/min [1510000], rate=30402.68/min [1520000], rate=30481.28/min [1530000], rate=30569.43/min [1540000], rate=30656.93/min [1550000], rate=30743.80/min [1560000], rate=30860.53/min [1570000], rate=30966.47/min [1580000], rate=31081.97/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.mRecrwSqmA/ctat_genome_lib_build_dir --filt_file /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -parsing /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info. 6000000.00 reads per min processed... 12000000.00 reads per min processed... 9000000.00 reads per min processed... 8000000.00 reads per min processed... 7500000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 5400000.00 reads per min processed... 5454545.45 reads per min processed... 5500000.00 reads per min processed... 5142857.14 reads per min processed... 5200000.00 reads per min processed... 5250000.00 reads per min processed... 5000000.00 reads per min processed... 5052631.58 reads per min processed... 4857142.86 reads per min processed... 4909090.91 reads per min processed... 4750000.00 reads per min processed... 4615384.62 reads per min processed... 4500000.00 reads per min processed... 4400000.00 reads per min processed... 4312500.00 reads per min processed... 4363636.36 reads per min processed... 4285714.29 reads per min processed... 4333333.33 reads per min processed... 4378378.38 reads per min processed... 4307692.31 reads per min processed... 4350000.00 reads per min processed... 4390243.90 reads per min processed... 4325581.40 reads per min processed... 4363636.36 reads per min processed... 4400000.00 reads per min processed... 4434782.61 reads per min processed... 4468085.11 reads per min processed... 4500000.00 reads per min processed... 4625000.00 reads per min processed... 4560000.00 reads per min processed... 4588235.29 reads per min processed... 4615384.62 reads per min processed... 4641509.43 reads per min processed... 4581818.18 reads per min processed... 4607142.86 reads per min processed... 4631578.95 reads per min processed... 4655172.41 reads per min processed... 4677966.10 reads per min processed... 4622950.82 reads per min processed... 4645161.29 reads per min processed... 4666666.67 reads per min processed... 4615384.62 reads per min processed... 4636363.64 reads per min processed... 4656716.42 reads per min processed... 4608695.65 reads per min processed... 4628571.43 reads per min processed... done. * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion -parsing fusion evidence: /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -outputting fusion candidates to file: /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.mRecrwSqmA/ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.mRecrwSqmA/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion CMD: mkdir -p /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir EM: Starting log likelihood: -97750.751918 EM: Round [1] log likelihood: -97629.597789 EM: Round [2] log likelihood: -97582.383505 EM: Round [3] log likelihood: -97559.525493 EM: Round [4] log likelihood: -97547.308813 EM: Round [5] log likelihood: -97540.416320 EM: Round [6] log likelihood: -97536.351404 EM: Round [7] log likelihood: -97533.843730 EM: Round [8] log likelihood: -97532.224880 EM: Round [9] log likelihood: -97531.134117 EM: Round [10] log likelihood: -97530.370802 EM: Round [11] log likelihood: -97529.819233 EM: Round [12] log likelihood: -97529.409980 EM: Round [13] log likelihood: -97529.099664 EM: Round [14] log likelihood: -97528.860122 EM: Round [15] log likelihood: -97528.672424 EM: Round [16] log likelihood: -97528.523459 EM: Round [17] log likelihood: -97528.403909 EM: Round [18] log likelihood: -97528.307011 EM: Round [19] log likelihood: -97528.227767 EM: Round [20] log likelihood: -97528.162427 EM: Round [21] log likelihood: -97528.108143 EM: Round [22] log likelihood: -97528.062723 EM: Round [23] log likelihood: -97528.024470 EM: Round [24] log likelihood: -97527.992053 EM: Round [25] log likelihood: -97527.964422 EM: Round [26] log likelihood: -97527.940740 EM: Round [27] log likelihood: -97527.920341 EM: Round [28] log likelihood: -97527.902683 EM: Round [29] log likelihood: -97527.887329 EM: Round [30] log likelihood: -97527.873923 EM: Round [31] log likelihood: -97527.862170 EM: Round [32] log likelihood: -97527.851828 EM: Round [33] log likelihood: -97527.842697 EM: Round [34] log likelihood: -97527.834607 EM: Round [35] log likelihood: -97527.827420 EM: Round [36] log likelihood: -97527.821015 EM: Round [37] log likelihood: -97527.815292 EM: Round [38] log likelihood: -97527.810167 EM: Round [39] log likelihood: -97527.805565 EM: Round [40] log likelihood: -97527.801425 EM: Round [41] log likelihood: -97527.797691 EM: Round [42] log likelihood: -97527.794319 EM: Round [43] log likelihood: -97527.791267 EM: Round [44] log likelihood: -97527.788500 EM: Round [45] log likelihood: -97527.785987 EM: Round [46] log likelihood: -97527.783702 EM: Round [47] log likelihood: -97527.781621 EM: Round [48] log likelihood: -97527.779722 EM: Round [49] log likelihood: -97527.777988 EM: Round [50] log likelihood: -97527.776402 EM: Round [51] log likelihood: -97527.774951 EM: Round [52] log likelihood: -97527.773619 EM: Round [53] log likelihood: -97527.772398 EM: Round [54] log likelihood: -97527.771275 EM: Round [55] log likelihood: -97527.770243 EM: Round [56] log likelihood: -97527.769292 EM: Round [57] log likelihood: -97527.768415 EM: Round [58] log likelihood: -97527.767607 EM: Round [59] log likelihood: -97527.766860 EM: Round [60] log likelihood: -97527.766170 EM: Round [61] log likelihood: -97527.765531 EM: Round [62] log likelihood: -97527.764939 EM: Round [63] log likelihood: -97527.764390 EM: Round [64] log likelihood: -97527.763881 EM: Round [65] log likelihood: -97527.763409 EM: Round [66] log likelihood: -97527.762969 EM: Round [67] log likelihood: -97527.762560 EM: Round [68] log likelihood: -97527.762180 EM: Round [69] log likelihood: -97527.761825 EM: Round [70] log likelihood: -97527.761494 EM: Round [71] log likelihood: -97527.761185 EM: Round [72] log likelihood: -97527.760896 EM: Round [73] log likelihood: -97527.760626 EM: Round [74] log likelihood: -97527.760374 EM: Round [75] log likelihood: -97527.760137 EM: Round [76] log likelihood: -97527.759915 EM: Round [77] log likelihood: -97527.759707 EM: Round [78] log likelihood: -97527.759512 EM: Round [79] log likelihood: -97527.759329 EM: Round [80] log likelihood: -97527.759156 EM: Round [81] log likelihood: -97527.758994 EM: Round [82] log likelihood: -97527.758841 EM: Round [83] log likelihood: -97527.758697 EM: Round [84] log likelihood: -97527.758561 EM: Round [85] log likelihood: -97527.758433 EM: Round [86] log likelihood: -97527.758312 EM: Round [87] log likelihood: -97527.758198 EM: Round [88] log likelihood: -97527.758090 EM: Round [89] log likelihood: -97527.757987 EM: Round [90] log likelihood: -97527.757890 EM: Stopping iterations at round 90 due to insufficient improvement in likelihood. EM: Starting log likelihood: -97708.897608 EM: Round [1] log likelihood: -97602.223964 EM: Round [2] log likelihood: -97561.772370 EM: Round [3] log likelihood: -97542.648916 EM: Round [4] log likelihood: -97532.636367 EM: Round [5] log likelihood: -97527.088487 EM: Round [6] log likelihood: -97523.872219 EM: Round [7] log likelihood: -97521.921835 EM: Round [8] log likelihood: -97520.684009 EM: Round [9] log likelihood: -97519.863436 EM: Round [10] log likelihood: -97519.297699 EM: Round [11] log likelihood: -97518.894274 EM: Round [12] log likelihood: -97518.598378 EM: Round [13] log likelihood: -97518.376262 EM: Round [14] log likelihood: -97518.206324 EM: Round [15] log likelihood: -97518.074238 EM: Round [16] log likelihood: -97517.970200 EM: Round [17] log likelihood: -97517.887316 EM: Round [18] log likelihood: -97517.820625 EM: Round [19] log likelihood: -97517.766489 EM: Round [20] log likelihood: -97517.722194 EM: Round [21] log likelihood: -97517.685688 EM: Round [22] log likelihood: -97517.655401 EM: Round [23] log likelihood: -97517.630117 EM: Round [24] log likelihood: -97517.608888 EM: Round [25] log likelihood: -97517.590966 EM: Round [26] log likelihood: -97517.575761 EM: Round [27] log likelihood: -97517.562797 EM: Round [28] log likelihood: -97517.551694 EM: Round [29] log likelihood: -97517.542143 EM: Round [30] log likelihood: -97517.533893 EM: Round [31] log likelihood: -97517.526740 EM: Round [32] log likelihood: -97517.520514 EM: Round [33] log likelihood: -97517.515075 EM: Round [34] log likelihood: -97517.510307 EM: Round [35] log likelihood: -97517.506114 EM: Round [36] log likelihood: -97517.502414 EM: Round [37] log likelihood: -97517.499140 EM: Round [38] log likelihood: -97517.496233 EM: Round [39] log likelihood: -97517.493646 EM: Round [40] log likelihood: -97517.491336 EM: Round [41] log likelihood: -97517.489268 EM: Round [42] log likelihood: -97517.487412 EM: Round [43] log likelihood: -97517.485743 EM: Round [44] log likelihood: -97517.484237 EM: Round [45] log likelihood: -97517.482876 EM: Round [46] log likelihood: -97517.481642 EM: Round [47] log likelihood: -97517.480522 EM: Round [48] log likelihood: -97517.479502 EM: Round [49] log likelihood: -97517.478572 EM: Round [50] log likelihood: -97517.477722 EM: Round [51] log likelihood: -97517.476944 EM: Round [52] log likelihood: -97517.476230 EM: Round [53] log likelihood: -97517.475573 EM: Round [54] log likelihood: -97517.474968 EM: Round [55] log likelihood: -97517.474411 EM: Round [56] log likelihood: -97517.473895 EM: Round [57] log likelihood: -97517.473418 EM: Round [58] log likelihood: -97517.472976 EM: Round [59] log likelihood: -97517.472565 EM: Round [60] log likelihood: -97517.472183 EM: Round [61] log likelihood: -97517.471827 EM: Round [62] log likelihood: -97517.471495 EM: Round [63] log likelihood: -97517.471185 EM: Round [64] log likelihood: -97517.470896 EM: Round [65] log likelihood: -97517.470624 EM: Round [66] log likelihood: -97517.470370 EM: Round [67] log likelihood: -97517.470131 EM: Round [68] log likelihood: -97517.469907 EM: Round [69] log likelihood: -97517.469696 EM: Round [70] log likelihood: -97517.469497 EM: Round [71] log likelihood: -97517.469310 EM: Round [72] log likelihood: -97517.469133 EM: Round [73] log likelihood: -97517.468966 EM: Round [74] log likelihood: -97517.468808 EM: Round [75] log likelihood: -97517.468659 EM: Round [76] log likelihood: -97517.468517 EM: Round [77] log likelihood: -97517.468383 EM: Round [78] log likelihood: -97517.468256 EM: Round [79] log likelihood: -97517.468136 EM: Round [80] log likelihood: -97517.468021 EM: Round [81] log likelihood: -97517.467912 EM: Round [82] log likelihood: -97517.467809 EM: Round [83] log likelihood: -97517.467710 EM: Stopping iterations at round 83 due to insufficient improvement in likelihood. CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.mRecrwSqmA/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.mRecrwSqmA/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.mRecrwSqmA/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20 CMD: cp /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged CMD: ln -sf /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered * Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 108305891 > /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM * Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.mRecrwSqmA/ctat_genome_lib_build_dir > /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.mRecrwSqmA/ctat_genome_lib_build_dir --annotate /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot * Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.mRecrwSqmA/ctat_genome_lib_build_dir -done, see /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass * Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.mRecrwSqmA/ctat_genome_lib_build_dir -filter_likely_RT_artifacts: (pass: 692, filtered: 6698) * Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001 * Running CMD: cp /tmp/nxf.mRecrwSqmA/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv * Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.mRecrwSqmA/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv WARNING, no entry stored in dbm for [ENSG00000229739.4] WARNING, no entry stored in dbm for [ENSG00000237296.9] WARNING, no entry stored in dbm for [ENSG00000227681.5] WARNING, no entry stored in dbm for [ENSG00000225594.1] WARNING, no entry stored in dbm for [ENSG00000224897.8] WARNING, no entry stored in dbm for [ENSG00000277862.1] WARNING, no entry stored in dbm for [ENSG00000287721.1] WARNING, no entry stored in dbm for [ENSG00000285094.1] WARNING, no entry stored in dbm for [ENSG00000225851.1] WARNING, no entry stored in dbm for [ENSG00000227195.11] WARNING, no entry stored in dbm for [ENSG00000263883.1] WARNING, no entry stored in dbm for [ENSG00000234715.2] WARNING, no entry stored in dbm for [ENSG00000287215.1] WARNING, no entry stored in dbm for [ENSG00000235263.1] WARNING, no entry stored in dbm for [ENSG00000228685.1] WARNING, no entry stored in dbm for [ENSG00000234851.4] WARNING, no entry stored in dbm for [ENSG00000279096.2] WARNING, no entry stored in dbm for [ENSG00000258440.1] WARNING, no entry stored in dbm for [ENSG00000259294.1] WARNING, no entry stored in dbm for [ENSG00000228623.6] WARNING, no entry stored in dbm for [ENSG00000258711.2] WARNING, no entry stored in dbm for [ENSG00000285470.1] WARNING, no entry stored in dbm for [ENSG00000230565.1] WARNING, no entry stored in dbm for [ENSG00000234420.7] WARNING, no entry stored in dbm for [ENSG00000287353.1] WARNING, no entry stored in dbm for [ENSG00000250205.1] WARNING, no entry stored in dbm for [ENSG00000266356.1] WARNING, no entry stored in dbm for [ENSG00000230202.1] WARNING, no entry stored in dbm for [ENSG00000269486.2] WARNING, no entry stored in dbm for [ENSG00000228775.8] WARNING, no entry stored in dbm for [ENSG00000225292.2] WARNING, no entry stored in dbm for [ENSG00000231507.2] WARNING, no entry stored in dbm for [ENSG00000181984.11] WARNING, no entry stored in dbm for [ENSG00000227986.1] WARNING, no entry stored in dbm for [ENSG00000287985.1] WARNING, no entry stored in dbm for [ENSG00000186825.6] WARNING, no entry stored in dbm for [ENSG00000241743.4] WARNING, no entry stored in dbm for [ENSG00000255182.2] WARNING, no entry stored in dbm for [ENSG00000278754.1] WARNING, no entry stored in dbm for [ENSG00000241570.8] WARNING, no entry stored in dbm for [ENSG00000266733.7] WARNING, no entry stored in dbm for [ENSG00000286746.1] WARNING, no entry stored in dbm for [ENSG00000255041.1] WARNING, no entry stored in dbm for [ENSG00000227195.11] WARNING, no entry stored in dbm for [ENSG00000128438.10] WARNING, no entry stored in dbm for [ENSG00000236959.1] WARNING, no entry stored in dbm for [ENSG00000244502.2] WARNING, no entry stored in dbm for [ENSG00000277072.5] WARNING, no entry stored in dbm for [ENSG00000223738.3] WARNING, no entry stored in dbm for [ENSG00000285527.1] WARNING, no entry stored in dbm for [ENSG00000268140.1] WARNING, no entry stored in dbm for [ENSG00000263934.5] WARNING, no entry stored in dbm for [ENSG00000200318.2] WARNING, no entry stored in dbm for [ENSG00000188004.11] WARNING, no entry stored in dbm for [ENSG00000267322.2] WARNING, no entry stored in dbm for [ENSG00000283627.1] WARNING, no entry stored in dbm for [ENSG00000255136.3] WARNING, no entry stored in dbm for [ENSG00000244945.1] WARNING, no entry stored in dbm for [ENSG00000244945.1] WARNING, no entry stored in dbm for [ENSG00000182257.8] WARNING, no entry stored in dbm for [ENSG00000226107.1] WARNING, no entry stored in dbm for [ENSG00000241081.1] WARNING, no entry stored in dbm for [ENSG00000225483.1] WARNING, no entry stored in dbm for [ENSG00000273295.1] WARNING, no entry stored in dbm for [ENSG00000271705.1] WARNING, no entry stored in dbm for [ENSG00000232463.1] WARNING, no entry stored in dbm for [ENSG00000218716.1] WARNING, no entry stored in dbm for [ENSG00000240606.3] WARNING, no entry stored in dbm for [ENSG00000275014.1] WARNING, no entry stored in dbm for [ENSG00000244642.3] WARNING, no entry stored in dbm for [ENSG00000223202.1] WARNING, no entry stored in dbm for [ENSG00000200966.1] WARNING, no entry stored in dbm for [ENSG00000223117.1] WARNING, no entry stored in dbm for [ENSG00000200708.1] WARNING, no entry stored in dbm for [ENSG00000223117.1] WARNING, no entry stored in dbm for [ENSG00000207269.1] WARNING, no entry stored in dbm for [ENSG00000199831.1] WARNING, no entry stored in dbm for [ENSG00000222068.1] WARNING, no entry stored in dbm for [ENSG00000267080.6] WARNING, no entry stored in dbm for [ENSG00000258545.6] WARNING, no entry stored in dbm for [ENSG00000234647.2] WARNING, no entry stored in dbm for [ENSG00000273192.1] WARNING, no entry stored in dbm for [ENSG00000283907.1] WARNING, no entry stored in dbm for [ENSG00000245293.3] WARNING, no entry stored in dbm for [ENSG00000241597.2] WARNING, no entry stored in dbm for [ENSG00000239653.1] WARNING, no entry stored in dbm for [ENSG00000249859.12] WARNING, no entry stored in dbm for [ENSG00000124224.17] WARNING, no entry stored in dbm for [ENSG00000254081.2] WARNING, no entry stored in dbm for [ENSG00000203739.4] WARNING, no entry stored in dbm for [ENSG00000279182.1] WARNING, no entry stored in dbm for [ENSG00000272655.2] WARNING, no entry stored in dbm for [ENSG00000250778.1] WARNING, no entry stored in dbm for [ENSG00000067601.8] WARNING, no entry stored in dbm for [ENSG00000249680.2] WARNING, no entry stored in dbm for [ENSG00000226541.1] WARNING, no entry stored in dbm for [ENSG00000260464.1] WARNING, no entry stored in dbm for [ENSG00000241570.8] WARNING, no entry stored in dbm for [ENSG00000223891.6] WARNING, no entry stored in dbm for [ENSG00000279182.1] WARNING, no entry stored in dbm for [ENSG00000234895.1] WARNING, no entry stored in dbm for [ENSG00000247556.6] WARNING, no entry stored in dbm for [ENSG00000257740.1] WARNING, no entry stored in dbm for [ENSG00000244009.1] WARNING, no entry stored in dbm for [ENSG00000259275.4] WARNING, no entry stored in dbm for [ENSG00000273125.2] WARNING, no entry stored in dbm for [ENSG00000245532.9] WARNING, no entry stored in dbm for [ENSG00000259374.2] WARNING, no entry stored in dbm for [ENSG00000267382.1] WARNING, no entry stored in dbm for [ENSG00000250687.6] WARNING, no entry stored in dbm for [ENSG00000203865.11] WARNING, no entry stored in dbm for [ENSG00000262708.1] WARNING, no entry stored in dbm for [ENSG00000236051.7] WARNING, no entry stored in dbm for [ENSG00000283426.1] WARNING, no entry stored in dbm for [ENSG00000225531.1] WARNING, no entry stored in dbm for [ENSG00000253927.1] WARNING, no entry stored in dbm for [ENSG00000264538.6] WARNING, no entry stored in dbm for [ENSG00000267532.5] WARNING, no entry stored in dbm for [ENSG00000233006.8] WARNING, no entry stored in dbm for [ENSG00000233006.8] WARNING, no entry stored in dbm for [ENSG00000223446.2] WARNING, no entry stored in dbm for [ENSG00000258861.1] WARNING, no entry stored in dbm for [ENSG00000272690.6] WARNING, no entry stored in dbm for [ENSG00000281248.1] WARNING, no entry stored in dbm for [ENSG00000260337.4] WARNING, no entry stored in dbm for [ENSG00000234456.8] WARNING, no entry stored in dbm for [ENSG00000286279.1] WARNING, no entry stored in dbm for [ENSG00000249072.1] WARNING, no entry stored in dbm for [ENSG00000250986.1] WARNING, no entry stored in dbm for [ENSG00000232190.3] WARNING, no entry stored in dbm for [ENSG00000234323.8] WARNING, no entry stored in dbm for [ENSG00000241369.6] WARNING, no entry stored in dbm for [ENSG00000281912.1] WARNING, no entry stored in dbm for [ENSG00000235366.2] WARNING, no entry stored in dbm for [ENSG00000235687.9] WARNING, no entry stored in dbm for [ENSG00000225269.3] WARNING, no entry stored in dbm for [ENSG00000225249.6] WARNING, no entry stored in dbm for [ENSG00000286322.1] WARNING, no entry stored in dbm for [ENSG00000275055.1] WARNING, no entry stored in dbm for [ENSG00000286027.1] WARNING, no entry stored in dbm for [ENSG00000213197.3] WARNING, no entry stored in dbm for [ENSG00000262585.1] WARNING, no entry stored in dbm for [ENSG00000240637.3] WARNING, no entry stored in dbm for [ENSG00000254034.2] WARNING, no entry stored in dbm for [ENSG00000165874.13] WARNING, no entry stored in dbm for [ENSG00000260464.1] WARNING, no entry stored in dbm for [ENSG00000276206.1] WARNING, no entry stored in dbm for [ENSG00000227638.2] WARNING, no entry stored in dbm for [ENSG00000259722.2] WARNING, no entry stored in dbm for [ENSG00000224557.7] WARNING, no entry stored in dbm for [ENSG00000225851.1] WARNING, no entry stored in dbm for [ENSG00000270255.1] WARNING, no entry stored in dbm for [ENSG00000229807.12] WARNING, no entry stored in dbm for [ENSG00000241549.8] WARNING, no entry stored in dbm for [ENSG00000255199.2] WARNING, no entry stored in dbm for [ENSG00000234323.8] WARNING, no entry stored in dbm for [ENSG00000232354.8] WARNING, no entry stored in dbm for [ENSG00000277741.4] WARNING, no entry stored in dbm for [ENSG00000187812.12] WARNING, no entry stored in dbm for [ENSG00000279359.1] WARNING, no entry stored in dbm for [ENSG00000269821.1] WARNING, no entry stored in dbm for [ENSG00000205318.5] WARNING, no entry stored in dbm for [ENSG00000266835.6] WARNING, no entry stored in dbm for [ENSG00000275294.4] WARNING, no entry stored in dbm for [ENSG00000279485.1] WARNING, no entry stored in dbm for [ENSG00000270641.1] WARNING, no entry stored in dbm for [ENSG00000288025.1] WARNING, no entry stored in dbm for [ENSG00000264044.1] WARNING, no entry stored in dbm for [ENSG00000261614.1] WARNING, no entry stored in dbm for [ENSG00000279390.1] WARNING, no entry stored in dbm for [ENSG00000250195.1] WARNING, no entry stored in dbm for [ENSG00000203930.12] WARNING, no entry stored in dbm for [ENSG00000226567.2] WARNING, no entry stored in dbm for [ENSG00000249072.1] WARNING, no entry stored in dbm for [ENSG00000100068.14] WARNING, no entry stored in dbm for [ENSG00000203585.4] WARNING, no entry stored in dbm for [ENSG00000227195.11] WARNING, no entry stored in dbm for [ENSG00000259488.2] WARNING, no entry stored in dbm for [ENSG00000287687.2] WARNING, no entry stored in dbm for [ENSG00000168405.17] WARNING, no entry stored in dbm for [ENSG00000172342.5] WARNING, no entry stored in dbm for [ENSG00000283426.1] WARNING, no entry stored in dbm for [ENSG00000256847.1] WARNING, no entry stored in dbm for [ENSG00000233098.9] WARNING, no entry stored in dbm for [ENSG00000241131.2] WARNING, no entry stored in dbm for [ENSG00000236283.5] WARNING, no entry stored in dbm for [ENSG00000241597.2] WARNING, no entry stored in dbm for [ENSG00000165121.11] WARNING, no entry stored in dbm for [ENSG00000283003.2] WARNING, no entry stored in dbm for [ENSG00000257252.6] WARNING, no entry stored in dbm for [ENSG00000272922.1] WARNING, no entry stored in dbm for [ENSG00000214293.9] WARNING, no entry stored in dbm for [ENSG00000224078.15] WARNING, no entry stored in dbm for [ENSG00000256591.5] WARNING, no entry stored in dbm for [ENSG00000242779.7] WARNING, no entry stored in dbm for [ENSG00000256591.5] WARNING, no entry stored in dbm for [ENSG00000256591.5] WARNING, no entry stored in dbm for [ENSG00000285219.2] WARNING, no entry stored in dbm for [ENSG00000261798.1] WARNING, no entry stored in dbm for [ENSG00000224635.2] WARNING, no entry stored in dbm for [ENSG00000235749.3] WARNING, no entry stored in dbm for [ENSG00000258776.1] WARNING, no entry stored in dbm for [ENSG00000230381.2] WARNING, no entry stored in dbm for [ENSG00000282564.1] WARNING, no entry stored in dbm for [ENSG00000230869.1] WARNING, no entry stored in dbm for [ENSG00000272140.2] WARNING, no entry stored in dbm for [ENSG00000223959.8] WARNING, no entry stored in dbm for [ENSG00000255185.6] WARNING, no entry stored in dbm for [ENSG00000288555.1] WARNING, no entry stored in dbm for [ENSG00000233123.1] WARNING, no entry stored in dbm for [ENSG00000234667.2] WARNING, no entry stored in dbm for [ENSG00000224141.6] WARNING, no entry stored in dbm for [ENSG00000287474.1] WARNING, no entry stored in dbm for [ENSG00000279047.4] WARNING, no entry stored in dbm for [ENSG00000286009.2] WARNING, no entry stored in dbm for [ENSG00000224216.1] WARNING, no entry stored in dbm for [ENSG00000275121.1] WARNING, no entry stored in dbm for [ENSG00000282508.2] WARNING, no entry stored in dbm for [ENSG00000261819.1] WARNING, no entry stored in dbm for [ENSG00000229930.1] WARNING, no entry stored in dbm for [ENSG00000235126.1] WARNING, no entry stored in dbm for [ENSG00000248376.2] WARNING, no entry stored in dbm for [ENSG00000286329.1] WARNING, no entry stored in dbm for [ENSG00000251600.8] WARNING, no entry stored in dbm for [ENSG00000251314.2] WARNING, no entry stored in dbm for [ENSG00000270177.1] WARNING, no entry stored in dbm for [ENSG00000080947.15] WARNING, no entry stored in dbm for [ENSG00000285729.1] WARNING, no entry stored in dbm for [ENSG00000282375.1] WARNING, no entry stored in dbm for [ENSG00000287400.1] WARNING, no entry stored in dbm for [ENSG00000280828.1] WARNING, no entry stored in dbm for [ENSG00000267305.2] WARNING, no entry stored in dbm for [ENSG00000237087.1] WARNING, no entry stored in dbm for [ENSG00000287440.1] WARNING, no entry stored in dbm for [ENSG00000254951.7] WARNING, no entry stored in dbm for [ENSG00000261386.2] WARNING, no entry stored in dbm for [ENSG00000213527.5] WARNING, no entry stored in dbm for [ENSG00000278969.1] WARNING, no entry stored in dbm for [ENSG00000223628.2] WARNING, no entry stored in dbm for [ENSG00000241846.1] WARNING, no entry stored in dbm for [ENSG00000248605.5] WARNING, no entry stored in dbm for [ENSG00000285106.2] WARNING, no entry stored in dbm for [ENSG00000258034.1] WARNING, no entry stored in dbm for [ENSG00000225840.2] WARNING, no entry stored in dbm for [ENSG00000272702.1] WARNING, no entry stored in dbm for [ENSG00000111788.10] WARNING, no entry stored in dbm for [ENSG00000286797.1] WARNING, no entry stored in dbm for [ENSG00000284959.2] WARNING, no entry stored in dbm for [ENSG00000279660.1] WARNING, no entry stored in dbm for [ENSG00000230305.2] WARNING, no entry stored in dbm for [ENSG00000250778.1] WARNING, no entry stored in dbm for [ENSG00000185065.6] WARNING, no entry stored in dbm for [ENSG00000237036.5] * STAR-Fusion complete. See output: /tmp/nxf.mRecrwSqmA/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)