Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/b8606c5ab4fbb4df33f6a24ea94bad/KG1_FFPE_01_RNA_0003_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/6cff9ce2c66ad1fc36099f30c20a56/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/6cff9ce2c66ad1fc36099f30c20a56/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/df0c6bc4195efe00c3a134004f3c6d/KG1_FFPE_01_RNA_0003_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory