AIH curated blacklist: matched 3 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 28
Pass (FILTER=PASS): 0 (0.0%)
Fail (FILTER=FAIL): 28 (100.0%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 3
All 3 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 10
confidence_below_min(low<high): 4
confidence_below_min(medium<high): 3
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 3
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 2
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 2
confidence_below_min(medium<high);aih_curated_blacklist: 1
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0);aih_curated_blacklist: 1
confidence_below_min(low<high);aih_curated_blacklist: 1
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 1
Breakdown by confidence:
low: 0 pass, 21 fail (total: 21)
medium: 0 pass, 7 fail (total: 7)
Arriba filter: 28 rows -> 0 PASS; wrote BT-20_FFPE_RNA_0001_B23LG7FLT4_3.arriba.fusions.filtered.tsv and BT-20_FFPE_RNA_0001_B23LG7FLT4_3.arriba.fusions.filtered_pass_only.tsv
Summary written to: BT-20_FFPE_RNA_0001_B23LG7FLT4_3.arriba.fusions.filter_summary.txt