Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/60cba0e7fffdff2e512939cdc248ae/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/60cba0e7fffdff2e512939cdc248ae/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/85e53f18a4d4efbebcf92d0d204721/ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/85e53f18a4d4efbebcf92d0d204721/ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory