File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/8423d1baae2c793bae46f9393bf6c4/.command.log
Size
748 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (FFPE_HD789_01_RNA_0004_B23LG7FLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/8423d1baae2c793bae46f9393bf6c4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/a30f0765d97b932dcd42a024fa94a4/FFPE_HD789_01_RNA_0004_B23LG7FLT4_1.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/8423d1baae2c793bae46f9393bf6c4/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  FFPE_HD789_01_RNA_0004_B23LG7FLT4_1: vaf_p90=0.706603 -> CONTAMINATED (~63.1%)

Output saved to: FFPE_HD789_01_RNA_0004_B23LG7FLT4_1.predictions.csv
Summary: 1/1 samples flagged as contaminated