.command.out - Workdir - NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:ARRIBA_FILTER (EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1)

File Info

Filename: .command.out
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/59efe192b3e49258ed2d55b6096ca2/.command.out
Size: 980 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:ARRIBA_FILTER (EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1)
Attempt

Content

  AIH curated blacklist: matched 0 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 4
  Pass (FILTER=PASS): 0 (0.0%)
  Fail (FILTER=FAIL): 4 (100.0%)

Failure reasons (top 15):
  confidence_below_min(medium<high): 1
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 1

Breakdown by confidence:
  low: 0 pass, 3 fail (total: 3)
  medium: 0 pass, 1 fail (total: 1)
Arriba filter: 4 rows -> 0 PASS; wrote EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1.arriba.fusions.filtered.tsv and EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1.arriba.fusions.filter_summary.txt