Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/515159faf899f64ec69ac58bfc815d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/7132df26e7863175c76594056fc136/BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/515159faf899f64ec69ac58bfc815d/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory