File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/7a052bc78fb99aa809b4fa7bfa517e/.command.out
Size
1.5 KB
Attempt
  AIH curated blacklist: matched 3 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 15
  Pass (FILTER=PASS): 0 (0.0%)
  Fail (FILTER=FAIL): 15 (100.0%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 3
  All 3 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 4
  confidence_below_min(medium<high);aih_curated_blacklist: 2
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 2
  confidence_below_min(medium<high): 1
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 1
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0);aih_curated_blacklist: 1
  confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 1
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 1

Breakdown by confidence:
  low: 0 pass, 8 fail (total: 8)
  medium: 0 pass, 7 fail (total: 7)
Arriba filter: 15 rows -> 0 PASS; wrote SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1.arriba.fusions.filtered.tsv and SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1.arriba.fusions.filter_summary.txt