Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ctat_ref_annot.interval_list Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/278e745aa6471c36eb394d2cb8f8ba/A673_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/ca2a98fdde9f059beea0593501bae8/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/ca2a98fdde9f059beea0593501bae8/.command.run Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/ref_annot.gtf.refflat Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/cc27e81fbc52ec9b867b07a3cda21c/A673_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam ==> STAGING COMPLETE (6 inputs) /usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory May 28, 2026 10:29:53 PM com.intel.gkl.NativeLibraryLoader load INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so [Thu May 28 22:29:53 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT A673_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT A673_FFPE_RNA_0001_B23LG7FLT4_2_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Thu May 28 22:29:53 GMT 2026] Executing as ?@nf-a6ca2a98fdde9f059beea0593501bae8-4ba9a-nx68f on Linux 6.12.83 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0 WARNING: BAM index file /tmp/nxf.XXXXTCmx2H/A673_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXXTCmx2H/A673_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam INFO 2026-05-28 22:29:56 CollectRnaSeqMetrics Loaded 58279 genes. INFO 2026-05-28 22:30:15 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 18s. Last read position: chr1:1,286,957 INFO 2026-05-28 22:30:37 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 21s. Last read position: chr1:1,790,558 INFO 2026-05-28 22:30:52 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 14s. Last read position: chr1:6,525,885 INFO 2026-05-28 22:31:10 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 18s. Last read position: chr1:8,865,421 INFO 2026-05-28 22:31:32 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 22s. Last read position: chr1:11,026,879 INFO 2026-05-28 22:31:52 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 19s. Last read position: chr1:12,333,241 INFO 2026-05-28 22:32:04 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 12s. Last read position: chr1:16,348,129 INFO 2026-05-28 22:32:17 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 13s. Last read position: chr1:19,112,674 INFO 2026-05-28 22:32:40 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 23s. Last read position: chr1:20,773,535 INFO 2026-05-28 22:33:01 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 21s. Last read position: chr1:23,081,509 INFO 2026-05-28 22:33:15 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 13s. Last read position: chr1:24,827,061 INFO 2026-05-28 22:33:27 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 12s. Last read position: chr1:26,772,499 INFO 2026-05-28 22:33:39 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 11s. Last read position: chr1:28,279,157 INFO 2026-05-28 22:34:20 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 41s. Last read position: chr1:30,933,231 INFO 2026-05-28 22:34:42 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 22s. Last read position: chr1:32,334,771 INFO 2026-05-28 22:34:57 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 14s. Last read position: chr1:35,190,716 INFO 2026-05-28 22:35:08 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 11s. Last read position: chr1:35,931,421 INFO 2026-05-28 22:35:23 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 15s. Last read position: chr1:38,004,712 INFO 2026-05-28 22:37:03 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 100s. Last read position: chr1:40,043,567 INFO 2026-05-28 22:37:22 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 18s. Last read position: chr1:42,851,601 INFO 2026-05-28 22:37:55 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 32s. Last read position: chr1:44,319,632 INFO 2026-05-28 22:38:16 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 20s. Last read position: chr1:46,006,357 INFO 2026-05-28 22:38:38 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 22s. Last read position: chr1:51,789,575 INFO 2026-05-28 22:39:21 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 43s. Last read position: chr1:51,840,459 INFO 2026-05-28 22:39:37 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 15s. Last read position: chr1:55,075,502 INFO 2026-05-28 22:39:57 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 19s. Last read position: chr1:62,477,741 INFO 2026-05-28 22:40:48 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 50s. Last read position: chr1:67,424,910 INFO 2026-05-28 22:41:15 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 26s. Last read position: chr1:77,878,573 INFO 2026-05-28 22:41:29 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 14s. Last read position: chr1:90,716,935 INFO 2026-05-28 22:41:49 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 19s. Last read position: chr1:99,993,557 INFO 2026-05-28 22:42:09 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 20s. Last read position: chr1:109,273,565 INFO 2026-05-28 22:42:31 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 22s. Last read position: chr1:110,603,392 INFO 2026-05-28 22:42:49 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 17s. Last read position: chr1:113,981,224 INFO 2026-05-28 22:43:08 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 18s. Last read position: chr1:116,388,140 INFO 2026-05-28 22:43:42 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 34s. Last read position: chr1:119,734,650 INFO 2026-05-28 22:44:09 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 27s. Last read position: chr1:121,384,891 INFO 2026-05-28 22:44:22 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 12s. Last read position: chr1:146,298,117 INFO 2026-05-28 22:44:46 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 24s. Last read position: chr1:149,475,734 INFO 2026-05-28 22:44:49 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 2s. Last read position: chr1:149,852,942 INFO 2026-05-28 22:44:58 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 9s. Last read position: chr1:150,552,233 INFO 2026-05-28 22:45:16 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 17s. Last read position: chr1:151,401,276 INFO 2026-05-28 22:45:36 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 19s. Last read position: chr1:153,662,457 INFO 2026-05-28 22:45:58 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 21s. Last read position: chr1:154,170,685 INFO 2026-05-28 22:46:45 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 46s. Last read position: chr1:154,602,474 INFO 2026-05-28 22:47:00 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 15s. Last read position: chr1:155,323,553 INFO 2026-05-28 22:47:41 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 40s. Last read position: chr1:156,042,797 INFO 2026-05-28 22:48:12 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 31s. Last read position: chr1:156,743,314 INFO 2026-05-28 22:48:30 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 17s. Last read position: chr1:160,350,133 INFO 2026-05-28 22:48:56 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 26s. Last read position: chr1:164,560,002 INFO 2026-05-28 22:49:11 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 15s. Last read position: chr1:171,557,647 INFO 2026-05-28 22:49:27 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 15s. Last read position: chr1:179,847,621 INFO 2026-05-28 22:49:39 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 11s. Last read position: chr1:183,630,469 INFO 2026-05-28 22:49:48 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 9s. Last read position: chr1:186,015,185 INFO 2026-05-28 22:50:05 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 16s. Last read position: chr1:186,322,388 INFO 2026-05-28 22:50:29 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 23s. Last read position: chr1:193,076,555 INFO 2026-05-28 22:50:48 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 18s. Last read position: chr1:201,313,520 INFO 2026-05-28 22:51:00 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 12s. Last read position: chr1:202,729,712 INFO 2026-05-28 22:51:25 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:21:28s. Time for last 1,000,000: 25s. Last read position: chr1:205,720,619 INFO 2026-05-28 22:51:42 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 17s. Last read position: chr1:214,383,666 INFO 2026-05-28 22:51:52 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:21:55s. Time for last 1,000,000: 9s. Last read position: chr1:222,627,745 INFO 2026-05-28 22:52:06 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 14s. Last read position: chr1:225,920,522 INFO 2026-05-28 22:52:43 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:22:46s. Time for last 1,000,000: 37s. Last read position: chr1:228,293,475 INFO 2026-05-28 22:53:01 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:23:04s. Time for last 1,000,000: 17s. Last read position: chr1:234,607,116 INFO 2026-05-28 22:53:20 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:23:23s. Time for last 1,000,000: 18s. Last read position: chr1:244,855,478 INFO 2026-05-28 22:53:45 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:23:48s. Time for last 1,000,000: 24s. Last read position: chr2:272,053 INFO 2026-05-28 22:53:54 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:23:57s. Time for last 1,000,000: 9s. Last read position: chr2:8,789,967 INFO 2026-05-28 22:54:06 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:24:09s. Time for last 1,000,000: 11s. Last read position: chr2:11,202,099 INFO 2026-05-28 22:54:25 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:24:28s. Time for last 1,000,000: 19s. Last read position: chr2:23,642,657 INFO 2026-05-28 22:54:41 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:24:44s. Time for last 1,000,000: 15s. Last read position: chr2:26,239,119 INFO 2026-05-28 22:54:52 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:24:55s. Time for last 1,000,000: 11s. Last read position: chr2:27,232,044 INFO 2026-05-28 22:55:08 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:25:11s. Time for last 1,000,000: 15s. Last read position: chr2:28,776,854 INFO 2026-05-28 22:55:23 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:25:26s. Time for last 1,000,000: 14s. Last read position: chr2:32,617,786 INFO 2026-05-28 22:55:27 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:25:30s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,264 INFO 2026-05-28 22:55:38 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:25:41s. Time for last 1,000,000: 10s. Last read position: chr2:32,916,264 INFO 2026-05-28 22:55:41 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:25:44s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,406 INFO 2026-05-28 22:55:43 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:25:46s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,423 INFO 2026-05-28 22:55:53 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:25:56s. Time for last 1,000,000: 10s. Last read position: chr2:38,985,851 INFO 2026-05-28 22:56:09 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:26:12s. Time for last 1,000,000: 16s. Last read position: chr2:43,574,786 INFO 2026-05-28 22:56:26 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:26:29s. Time for last 1,000,000: 16s. Last read position: chr2:47,800,494 INFO 2026-05-28 22:56:42 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:26:45s. Time for last 1,000,000: 15s. Last read position: chr2:55,234,840 INFO 2026-05-28 22:57:34 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:27:37s. Time for last 1,000,000: 52s. Last read position: chr2:61,478,655 INFO 2026-05-28 22:58:10 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:28:13s. Time for last 1,000,000: 35s. Last read position: chr2:65,268,963 INFO 2026-05-28 22:58:39 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:28:42s. Time for last 1,000,000: 28s. Last read position: chr2:70,288,093 INFO 2026-05-28 22:58:53 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:28:56s. Time for last 1,000,000: 14s. Last read position: chr2:73,769,265 INFO 2026-05-28 22:59:10 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:29:13s. Time for last 1,000,000: 16s. Last read position: chr2:74,959,340 INFO 2026-05-28 22:59:22 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:29:25s. Time for last 1,000,000: 12s. Last read position: chr2:86,144,707 INFO 2026-05-28 22:59:30 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:29:33s. Time for last 1,000,000: 7s. Last read position: chr2:96,265,234 INFO 2026-05-28 22:59:43 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:29:46s. Time for last 1,000,000: 13s. Last read position: chr2:99,169,578 INFO 2026-05-28 22:59:59 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:30:02s. Time for last 1,000,000: 15s. Last read position: chr2:107,848,517 INFO 2026-05-28 23:00:04 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:30:07s. Time for last 1,000,000: 5s. Last read position: chr2:108,766,966 INFO 2026-05-28 23:00:11 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:30:14s. Time for last 1,000,000: 6s. Last read position: chr2:110,534,307 INFO 2026-05-28 23:00:21 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:30:24s. Time for last 1,000,000: 9s. Last read position: chr2:112,391,012 INFO 2026-05-28 23:00:30 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:30:33s. Time for last 1,000,000: 9s. Last read position: chr2:120,087,206 INFO 2026-05-28 23:00:45 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:30:48s. Time for last 1,000,000: 15s. Last read position: chr2:130,153,319 INFO 2026-05-28 23:01:00 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:31:03s. Time for last 1,000,000: 15s. Last read position: chr2:135,870,338 INFO 2026-05-28 23:01:21 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:31:24s. Time for last 1,000,000: 21s. Last read position: chr2:151,465,344 INFO 2026-05-28 23:01:35 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:31:38s. Time for last 1,000,000: 13s. Last read position: chr2:165,572,626 INFO 2026-05-28 23:02:02 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:32:05s. Time for last 1,000,000: 26s. Last read position: chr2:171,834,727 INFO 2026-05-28 23:02:12 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:32:15s. Time for last 1,000,000: 9s. Last read position: chr2:177,215,537 INFO 2026-05-28 23:02:48 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:32:51s. Time for last 1,000,000: 36s. Last read position: chr2:183,021,582 INFO 2026-05-28 23:03:04 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:33:07s. Time for last 1,000,000: 15s. Last read position: chr2:196,843,995 INFO 2026-05-28 23:03:23 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:33:26s. Time for last 1,000,000: 19s. Last read position: chr2:200,913,973 INFO 2026-05-28 23:03:57 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:34:00s. Time for last 1,000,000: 33s. Last read position: chr2:206,152,435 INFO 2026-05-28 23:04:11 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:34:14s. Time for last 1,000,000: 14s. Last read position: chr2:214,778,812 INFO 2026-05-28 23:04:33 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:34:37s. Time for last 1,000,000: 22s. Last read position: chr2:215,372,121 INFO 2026-05-28 23:05:09 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:35:12s. Time for last 1,000,000: 35s. Last read position: chr2:215,379,189 INFO 2026-05-28 23:05:58 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:36:01s. Time for last 1,000,000: 49s. Last read position: chr2:215,388,253 INFO 2026-05-28 23:06:56 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:36:59s. Time for last 1,000,000: 58s. Last read position: chr2:215,407,127 INFO 2026-05-28 23:08:06 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:38:09s. Time for last 1,000,000: 69s. Last read position: chr2:215,423,393 INFO 2026-05-28 23:09:17 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:39:20s. Time for last 1,000,000: 70s. Last read position: chr2:216,148,265 INFO 2026-05-28 23:09:34 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:39:37s. Time for last 1,000,000: 17s. Last read position: chr2:218,234,058 INFO 2026-05-28 23:09:47 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:39:50s. Time for last 1,000,000: 13s. Last read position: chr2:219,386,346 INFO 2026-05-28 23:10:02 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:40:05s. Time for last 1,000,000: 14s. Last read position: chr2:226,794,917 INFO 2026-05-28 23:10:23 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:40:26s. Time for last 1,000,000: 20s. Last read position: chr2:231,080,219 INFO 2026-05-28 23:10:57 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:41:00s. Time for last 1,000,000: 34s. Last read position: chr2:232,844,041 INFO 2026-05-28 23:11:17 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:41:20s. Time for last 1,000,000: 19s. Last read position: chr2:240,593,910 INFO 2026-05-28 23:12:36 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:42:39s. Time for last 1,000,000: 79s. Last read position: chr2:241,115,065 INFO 2026-05-28 23:13:01 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:43:04s. Time for last 1,000,000: 25s. Last read position: chr3:3,147,874 INFO 2026-05-28 23:13:24 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:43:27s. Time for last 1,000,000: 23s. Last read position: chr3:10,301,360 INFO 2026-05-28 23:13:40 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:43:43s. Time for last 1,000,000: 16s. Last read position: chr3:14,481,759 INFO 2026-05-28 23:13:51 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:43:54s. Time for last 1,000,000: 10s. Last read position: chr3:25,620,730 INFO 2026-05-28 23:14:10 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:44:13s. Time for last 1,000,000: 18s. Last read position: chr3:37,008,864 INFO 2026-05-28 23:14:34 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:44:37s. Time for last 1,000,000: 24s. Last read position: chr3:44,450,902 INFO 2026-05-28 23:14:47 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:44:50s. Time for last 1,000,000: 13s. Last read position: chr3:47,877,513 INFO 2026-05-28 23:15:09 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:45:12s. Time for last 1,000,000: 22s. Last read position: chr3:49,357,348 INFO 2026-05-28 23:15:21 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:45:24s. Time for last 1,000,000: 12s. Last read position: chr3:52,211,324 INFO 2026-05-28 23:15:39 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:45:42s. Time for last 1,000,000: 17s. Last read position: chr3:58,285,363 INFO 2026-05-28 23:15:57 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:46:00s. Time for last 1,000,000: 18s. Last read position: chr3:88,058,161 INFO 2026-05-28 23:16:19 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:46:22s. Time for last 1,000,000: 21s. Last read position: chr3:101,682,801 INFO 2026-05-28 23:16:30 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:46:33s. Time for last 1,000,000: 11s. Last read position: chr3:119,826,514 INFO 2026-05-28 23:16:44 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:46:47s. Time for last 1,000,000: 13s. Last read position: chr3:125,288,213 INFO 2026-05-28 23:16:53 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:46:56s. Time for last 1,000,000: 8s. Last read position: chr3:128,620,491 INFO 2026-05-28 23:17:10 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:47:13s. Time for last 1,000,000: 17s. Last read position: chr3:132,332,320 INFO 2026-05-28 23:17:26 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:47:29s. Time for last 1,000,000: 16s. Last read position: chr3:139,367,014 INFO 2026-05-28 23:17:43 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:47:46s. Time for last 1,000,000: 16s. Last read position: chr3:149,965,204 INFO 2026-05-28 23:17:53 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:47:56s. Time for last 1,000,000: 10s. Last read position: chr3:156,704,682 INFO 2026-05-28 23:18:10 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:48:13s. Time for last 1,000,000: 16s. Last read position: chr3:172,773,884 INFO 2026-05-28 23:18:32 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:48:35s. Time for last 1,000,000: 22s. Last read position: chr3:183,672,410 INFO 2026-05-28 23:18:55 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:48:58s. Time for last 1,000,000: 23s. Last read position: chr3:184,323,541 INFO 2026-05-28 23:19:21 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:49:24s. Time for last 1,000,000: 25s. Last read position: chr3:186,790,143 INFO 2026-05-28 23:19:41 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:49:45s. Time for last 1,000,000: 20s. Last read position: chr3:194,666,245 INFO 2026-05-28 23:20:10 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:50:13s. Time for last 1,000,000: 28s. Last read position: chr3:197,883,646 INFO 2026-05-28 23:20:23 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:50:26s. Time for last 1,000,000: 13s. Last read position: chr4:1,723,755 INFO 2026-05-28 23:20:40 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:50:43s. Time for last 1,000,000: 16s. Last read position: chr4:1,901,150 INFO 2026-05-28 23:21:06 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:51:09s. Time for last 1,000,000: 25s. Last read position: chr4:3,187,681 INFO 2026-05-28 23:21:21 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:51:24s. Time for last 1,000,000: 15s. Last read position: chr4:7,855,494 INFO 2026-05-28 23:21:33 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:51:36s. Time for last 1,000,000: 12s. Last read position: chr4:17,819,967 INFO 2026-05-28 23:21:46 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:51:49s. Time for last 1,000,000: 12s. Last read position: chr4:30,723,527 INFO 2026-05-28 23:21:57 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:52:00s. Time for last 1,000,000: 10s. Last read position: chr4:41,257,628 INFO 2026-05-28 23:22:12 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:52:15s. Time for last 1,000,000: 15s. Last read position: chr4:56,459,430 INFO 2026-05-28 23:22:30 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:52:33s. Time for last 1,000,000: 17s. Last read position: chr4:78,180,978 INFO 2026-05-28 23:23:01 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:53:04s. Time for last 1,000,000: 30s. Last read position: chr4:86,784,511 INFO 2026-05-28 23:23:17 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:53:20s. Time for last 1,000,000: 15s. Last read position: chr4:101,108,973 INFO 2026-05-28 23:23:33 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:53:36s. Time for last 1,000,000: 16s. Last read position: chr4:107,712,101 INFO 2026-05-28 23:24:01 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:54:04s. Time for last 1,000,000: 28s. Last read position: chr4:121,380,431 INFO 2026-05-28 23:24:15 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:54:18s. Time for last 1,000,000: 13s. Last read position: chr4:127,812,796 INFO 2026-05-28 23:24:25 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:54:28s. Time for last 1,000,000: 9s. Last read position: chr4:143,376,270 INFO 2026-05-28 23:24:46 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:54:49s. Time for last 1,000,000: 21s. Last read position: chr4:152,411,517 INFO 2026-05-28 23:25:09 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:55:12s. Time for last 1,000,000: 23s. Last read position: chr4:169,697,557 INFO 2026-05-28 23:25:19 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:55:22s. Time for last 1,000,000: 10s. Last read position: chr4:186,620,898 INFO 2026-05-28 23:25:31 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:55:34s. Time for last 1,000,000: 11s. Last read position: chr5:5,463,076 INFO 2026-05-28 23:25:48 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:55:51s. Time for last 1,000,000: 16s. Last read position: chr5:14,394,059 INFO 2026-05-28 23:26:18 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:56:21s. Time for last 1,000,000: 30s. Last read position: chr5:16,818,057 INFO 2026-05-28 23:26:30 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:56:33s. Time for last 1,000,000: 11s. Last read position: chr5:34,187,897 INFO 2026-05-28 23:26:44 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:56:47s. Time for last 1,000,000: 13s. Last read position: chr5:37,170,096 INFO 2026-05-28 23:26:58 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:57:01s. Time for last 1,000,000: 14s. Last read position: chr5:43,704,271 INFO 2026-05-28 23:27:07 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:57:10s. Time for last 1,000,000: 8s. Last read position: chr5:61,541,922 INFO 2026-05-28 23:27:26 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:57:29s. Time for last 1,000,000: 19s. Last read position: chr5:69,365,254 INFO 2026-05-28 23:27:31 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:57:34s. Time for last 1,000,000: 4s. Last read position: chr5:71,373,463 INFO 2026-05-28 23:27:44 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:57:47s. Time for last 1,000,000: 13s. Last read position: chr5:73,498,508 INFO 2026-05-28 23:28:00 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:58:03s. Time for last 1,000,000: 15s. Last read position: chr5:80,158,885 INFO 2026-05-28 23:28:13 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:58:16s. Time for last 1,000,000: 12s. Last read position: chr5:95,513,595 INFO 2026-05-28 23:28:31 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:58:34s. Time for last 1,000,000: 17s. Last read position: chr5:112,838,537 INFO 2026-05-28 23:28:51 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:58:54s. Time for last 1,000,000: 20s. Last read position: chr5:126,826,022 INFO 2026-05-28 23:29:04 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:59:07s. Time for last 1,000,000: 12s. Last read position: chr5:134,167,210 INFO 2026-05-28 23:29:16 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:59:19s. Time for last 1,000,000: 11s. Last read position: chr5:138,386,170 INFO 2026-05-28 23:29:41 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:59:44s. Time for last 1,000,000: 25s. Last read position: chr5:139,364,585 INFO 2026-05-28 23:29:57 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 01:00:00s. Time for last 1,000,000: 15s. Last read position: chr5:140,835,035 INFO 2026-05-28 23:30:00 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 01:00:03s. Time for last 1,000,000: 3s. Last read position: chr5:141,188,700 INFO 2026-05-28 23:30:03 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 01:00:06s. Time for last 1,000,000: 3s. Last read position: chr5:141,421,873 INFO 2026-05-28 23:30:26 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 01:00:29s. Time for last 1,000,000: 22s. Last read position: chr5:146,153,758 INFO 2026-05-28 23:30:47 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 01:00:50s. Time for last 1,000,000: 20s. Last read position: chr5:150,131,979 INFO 2026-05-28 23:31:15 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 01:01:18s. Time for last 1,000,000: 28s. Last read position: chr5:154,755,865 INFO 2026-05-28 23:31:27 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 01:01:31s. Time for last 1,000,000: 12s. Last read position: chr5:163,441,080 INFO 2026-05-28 23:31:45 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 01:01:48s. Time for last 1,000,000: 17s. Last read position: chr5:171,391,305 INFO 2026-05-28 23:32:26 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 01:02:29s. Time for last 1,000,000: 41s. Last read position: chr5:171,405,362 INFO 2026-05-28 23:32:43 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 01:02:46s. Time for last 1,000,000: 16s. Last read position: chr5:177,041,142 INFO 2026-05-28 23:32:56 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 01:02:59s. Time for last 1,000,000: 12s. Last read position: chr5:177,538,093 INFO 2026-05-28 23:33:25 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 01:03:28s. Time for last 1,000,000: 29s. Last read position: chr5:179,766,668 INFO 2026-05-28 23:33:41 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 01:03:44s. Time for last 1,000,000: 15s. Last read position: chr6:311,891 INFO 2026-05-28 23:33:48 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 01:03:51s. Time for last 1,000,000: 6s. Last read position: chr6:7,189,215 INFO 2026-05-28 23:34:00 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 01:04:03s. Time for last 1,000,000: 12s. Last read position: chr6:13,617,781 INFO 2026-05-28 23:34:08 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 01:04:11s. Time for last 1,000,000: 8s. Last read position: chr6:24,416,437 INFO 2026-05-28 23:34:11 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 01:04:14s. Time for last 1,000,000: 3s. Last read position: chr6:26,156,366 INFO 2026-05-28 23:34:13 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 01:04:16s. Time for last 1,000,000: 2s. Last read position: chr6:26,240,428 INFO 2026-05-28 23:34:16 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 01:04:19s. Time for last 1,000,000: 2s. Last read position: chr6:27,807,538 INFO 2026-05-28 23:34:18 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 01:04:21s. Time for last 1,000,000: 1s. Last read position: chr6:27,867,105 INFO 2026-05-28 23:34:24 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 01:04:27s. Time for last 1,000,000: 6s. Last read position: chr6:30,546,216 INFO 2026-05-28 23:34:36 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 01:04:39s. Time for last 1,000,000: 12s. Last read position: chr6:31,154,723 INFO 2026-05-28 23:34:53 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 01:04:56s. Time for last 1,000,000: 16s. Last read position: chr6:31,644,179 INFO 2026-05-28 23:35:08 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 01:05:11s. Time for last 1,000,000: 15s. Last read position: chr6:31,829,018 INFO 2026-05-28 23:35:25 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 01:05:28s. Time for last 1,000,000: 16s. Last read position: chr6:33,166,546 INFO 2026-05-28 23:35:37 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 01:05:40s. Time for last 1,000,000: 12s. Last read position: chr6:33,443,507 INFO 2026-05-28 23:35:48 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 01:05:51s. Time for last 1,000,000: 10s. Last read position: chr6:36,107,468 INFO 2026-05-28 23:35:56 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 01:05:59s. Time for last 1,000,000: 8s. Last read position: chr6:41,646,121 INFO 2026-05-28 23:36:08 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 01:06:11s. Time for last 1,000,000: 11s. Last read position: chr6:43,065,652 INFO 2026-05-28 23:36:25 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 01:06:28s. Time for last 1,000,000: 17s. Last read position: chr6:44,232,394 INFO 2026-05-28 23:36:33 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 01:06:36s. Time for last 1,000,000: 8s. Last read position: chr6:52,995,704 INFO 2026-05-28 23:36:56 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 01:06:59s. Time for last 1,000,000: 22s. Last read position: chr6:68,635,942 INFO 2026-05-28 23:37:14 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 01:07:17s. Time for last 1,000,000: 18s. Last read position: chr6:80,168,987 INFO 2026-05-28 23:37:29 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 01:07:33s. Time for last 1,000,000: 15s. Last read position: chr6:87,518,182 INFO 2026-05-28 23:37:44 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 01:07:47s. Time for last 1,000,000: 14s. Last read position: chr6:98,834,955 INFO 2026-05-28 23:37:55 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 01:07:59s. Time for last 1,000,000: 11s. Last read position: chr6:109,443,324 INFO 2026-05-28 23:38:11 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 01:08:15s. Time for last 1,000,000: 15s. Last read position: chr6:116,278,741 INFO 2026-05-28 23:38:24 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 01:08:27s. Time for last 1,000,000: 12s. Last read position: chr6:128,375,163 INFO 2026-05-28 23:38:51 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 01:08:54s. Time for last 1,000,000: 26s. Last read position: chr6:138,944,548 INFO 2026-05-28 23:39:02 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 01:09:05s. Time for last 1,000,000: 11s. Last read position: chr6:149,683,355 INFO 2026-05-28 23:39:18 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 01:09:21s. Time for last 1,000,000: 16s. Last read position: chr6:157,201,006 INFO 2026-05-28 23:39:31 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 01:09:34s. Time for last 1,000,000: 12s. Last read position: chr6:159,783,945 INFO 2026-05-28 23:39:52 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 01:09:55s. Time for last 1,000,000: 21s. Last read position: chr6:168,308,176 INFO 2026-05-28 23:40:06 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 01:10:09s. Time for last 1,000,000: 14s. Last read position: chr7:1,499,095 INFO 2026-05-28 23:40:17 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 01:10:20s. Time for last 1,000,000: 10s. Last read position: chr7:4,781,714 INFO 2026-05-28 23:40:28 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 01:10:31s. Time for last 1,000,000: 11s. Last read position: chr7:5,528,292 INFO 2026-05-28 23:40:41 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 01:10:44s. Time for last 1,000,000: 12s. Last read position: chr7:6,147,766 INFO 2026-05-28 23:40:53 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 01:10:57s. Time for last 1,000,000: 12s. Last read position: chr7:18,086,901 INFO 2026-05-28 23:41:28 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 01:11:31s. Time for last 1,000,000: 34s. Last read position: chr7:26,197,677 INFO 2026-05-28 23:41:58 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 01:12:01s. Time for last 1,000,000: 30s. Last read position: chr7:35,873,745 INFO 2026-05-28 23:42:11 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 01:12:14s. Time for last 1,000,000: 12s. Last read position: chr7:44,112,719 INFO 2026-05-28 23:42:25 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 01:12:29s. Time for last 1,000,000: 14s. Last read position: chr7:48,372,270 INFO 2026-05-28 23:42:36 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 01:12:39s. Time for last 1,000,000: 10s. Last read position: chr7:70,771,570 INFO 2026-05-28 23:42:43 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 01:12:46s. Time for last 1,000,000: 6s. Last read position: chr7:73,596,751 INFO 2026-05-28 23:42:58 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 01:13:01s. Time for last 1,000,000: 14s. Last read position: chr7:75,188,083 INFO 2026-05-28 23:43:07 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 01:13:10s. Time for last 1,000,000: 8s. Last read position: chr7:76,304,026 INFO 2026-05-28 23:43:18 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 01:13:21s. Time for last 1,000,000: 11s. Last read position: chr7:90,232,296 INFO 2026-05-28 23:44:37 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 01:14:40s. Time for last 1,000,000: 78s. Last read position: chr7:92,226,543 INFO 2026-05-28 23:44:56 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 01:14:59s. Time for last 1,000,000: 19s. Last read position: chr7:97,854,663 INFO 2026-05-28 23:45:19 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 01:15:22s. Time for last 1,000,000: 22s. Last read position: chr7:100,023,566 INFO 2026-05-28 23:45:32 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 01:15:35s. Time for last 1,000,000: 13s. Last read position: chr7:100,612,855 INFO 2026-05-28 23:45:48 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 01:15:51s. Time for last 1,000,000: 16s. Last read position: chr7:102,446,518 INFO 2026-05-28 23:46:03 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 01:16:06s. Time for last 1,000,000: 15s. Last read position: chr7:106,099,212 INFO 2026-05-28 23:46:32 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 01:16:35s. Time for last 1,000,000: 28s. Last read position: chr7:116,526,644 INFO 2026-05-28 23:46:47 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 01:16:50s. Time for last 1,000,000: 15s. Last read position: chr7:127,702,500 INFO 2026-05-28 23:46:58 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 01:17:01s. Time for last 1,000,000: 11s. Last read position: chr7:128,974,904 INFO 2026-05-28 23:47:10 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 01:17:14s. Time for last 1,000,000: 12s. Last read position: chr7:135,578,893 INFO 2026-05-28 23:47:20 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 01:17:23s. Time for last 1,000,000: 9s. Last read position: chr7:140,696,712 INFO 2026-05-28 23:47:37 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 01:17:40s. Time for last 1,000,000: 16s. Last read position: chr7:144,364,248 INFO 2026-05-28 23:47:50 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 01:17:53s. Time for last 1,000,000: 13s. Last read position: chr7:151,035,941 INFO 2026-05-28 23:48:19 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 01:18:22s. Time for last 1,000,000: 28s. Last read position: chr7:152,315,224 INFO 2026-05-28 23:48:33 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 01:18:36s. Time for last 1,000,000: 14s. Last read position: chr8:6,444,725 INFO 2026-05-28 23:48:49 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 01:18:52s. Time for last 1,000,000: 15s. Last read position: chr8:12,754,911 INFO 2026-05-28 23:49:06 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 01:19:09s. Time for last 1,000,000: 17s. Last read position: chr8:20,197,415 INFO 2026-05-28 23:49:19 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 01:19:23s. Time for last 1,000,000: 13s. Last read position: chr8:22,618,670 INFO 2026-05-28 23:49:30 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 01:19:33s. Time for last 1,000,000: 10s. Last read position: chr8:26,581,978 INFO 2026-05-28 23:49:41 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 01:19:44s. Time for last 1,000,000: 10s. Last read position: chr8:30,679,667 INFO 2026-05-28 23:49:49 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 01:19:52s. Time for last 1,000,000: 8s. Last read position: chr8:37,745,554 INFO 2026-05-28 23:49:58 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 01:20:01s. Time for last 1,000,000: 9s. Last read position: chr8:38,331,508 INFO 2026-05-28 23:50:36 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 01:20:39s. Time for last 1,000,000: 37s. Last read position: chr8:41,932,963 INFO 2026-05-28 23:50:52 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 01:20:56s. Time for last 1,000,000: 16s. Last read position: chr8:47,860,921 INFO 2026-05-28 23:51:14 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 01:21:17s. Time for last 1,000,000: 21s. Last read position: chr8:55,804,904 INFO 2026-05-28 23:51:26 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 01:21:29s. Time for last 1,000,000: 12s. Last read position: chr8:66,430,018 INFO 2026-05-28 23:51:43 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 01:21:46s. Time for last 1,000,000: 16s. Last read position: chr8:73,595,166 INFO 2026-05-28 23:51:55 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 01:21:58s. Time for last 1,000,000: 12s. Last read position: chr8:96,299,721 INFO 2026-05-28 23:52:26 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 01:22:29s. Time for last 1,000,000: 30s. Last read position: chr8:114,030,093 INFO 2026-05-28 23:52:36 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 01:22:39s. Time for last 1,000,000: 10s. Last read position: chr8:125,787,191 INFO 2026-05-28 23:52:57 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 01:23:00s. Time for last 1,000,000: 20s. Last read position: chr8:132,804,614 INFO 2026-05-28 23:53:21 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 01:23:24s. Time for last 1,000,000: 23s. Last read position: chr8:143,575,069 INFO 2026-05-28 23:53:47 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 01:23:50s. Time for last 1,000,000: 26s. Last read position: chr8:143,821,831 INFO 2026-05-28 23:54:00 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 01:24:03s. Time for last 1,000,000: 12s. Last read position: chr8:144,080,065 INFO 2026-05-28 23:54:11 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 01:24:14s. Time for last 1,000,000: 11s. Last read position: chr8:144,393,358 INFO 2026-05-28 23:54:22 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 01:24:25s. Time for last 1,000,000: 11s. Last read position: chr8:144,625,626 INFO 2026-05-28 23:54:37 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 01:24:40s. Time for last 1,000,000: 14s. Last read position: chr9:6,014,422 INFO 2026-05-28 23:55:02 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 01:25:05s. Time for last 1,000,000: 24s. Last read position: chr9:16,053,807 INFO 2026-05-28 23:55:11 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 01:25:14s. Time for last 1,000,000: 9s. Last read position: chr9:33,462,132 INFO 2026-05-28 23:55:34 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 01:25:38s. Time for last 1,000,000: 23s. Last read position: chr9:35,072,525 INFO 2026-05-28 23:55:45 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 01:25:48s. Time for last 1,000,000: 10s. Last read position: chr9:36,374,809 INFO 2026-05-28 23:55:54 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 01:25:57s. Time for last 1,000,000: 9s. Last read position: chr9:73,160,336 INFO 2026-05-28 23:56:09 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 01:26:12s. Time for last 1,000,000: 15s. Last read position: chr9:86,027,862 INFO 2026-05-28 23:56:35 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 01:26:38s. Time for last 1,000,000: 25s. Last read position: chr9:88,475,174 INFO 2026-05-28 23:56:49 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 01:26:52s. Time for last 1,000,000: 14s. Last read position: chr9:93,557,969 INFO 2026-05-28 23:56:58 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 01:27:01s. Time for last 1,000,000: 9s. Last read position: chr9:100,498,821 INFO 2026-05-28 23:57:22 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 01:27:25s. Time for last 1,000,000: 23s. Last read position: chr9:111,428,093 INFO 2026-05-28 23:57:33 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 01:27:36s. Time for last 1,000,000: 11s. Last read position: chr9:115,059,847 INFO 2026-05-28 23:57:51 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 01:27:54s. Time for last 1,000,000: 17s. Last read position: chr9:121,763,567 INFO 2026-05-28 23:58:04 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 01:28:07s. Time for last 1,000,000: 12s. Last read position: chr9:125,346,805 INFO 2026-05-28 23:58:24 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 01:28:27s. Time for last 1,000,000: 20s. Last read position: chr9:128,345,184 INFO 2026-05-28 23:58:47 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 01:28:51s. Time for last 1,000,000: 23s. Last read position: chr9:128,907,488 INFO 2026-05-28 23:58:59 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 01:29:02s. Time for last 1,000,000: 11s. Last read position: chr9:130,579,726 INFO 2026-05-28 23:59:10 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 01:29:13s. Time for last 1,000,000: 10s. Last read position: chr9:131,475,641 INFO 2026-05-28 23:59:23 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 01:29:26s. Time for last 1,000,000: 13s. Last read position: chr9:133,345,186 INFO 2026-05-28 23:59:31 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 01:29:34s. Time for last 1,000,000: 8s. Last read position: chr9:135,119,970 INFO 2026-05-28 23:59:44 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 01:29:47s. Time for last 1,000,000: 12s. Last read position: chr9:136,476,839 INFO 2026-05-29 00:00:02 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 01:30:05s. Time for last 1,000,000: 17s. Last read position: chr9:136,993,622 INFO 2026-05-29 00:00:13 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 01:30:16s. Time for last 1,000,000: 11s. Last read position: chr9:137,588,658 INFO 2026-05-29 00:00:40 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 01:30:43s. Time for last 1,000,000: 26s. Last read position: chr10:5,453,256 INFO 2026-05-29 00:00:50 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 01:30:54s. Time for last 1,000,000: 10s. Last read position: chr10:12,172,815 INFO 2026-05-29 00:01:03 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 01:31:06s. Time for last 1,000,000: 12s. Last read position: chr10:18,539,239 INFO 2026-05-29 00:01:23 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 01:31:26s. Time for last 1,000,000: 20s. Last read position: chr10:26,670,882 INFO 2026-05-29 00:01:40 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 01:31:43s. Time for last 1,000,000: 17s. Last read position: chr10:32,017,265 INFO 2026-05-29 00:01:47 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 01:31:50s. Time for last 1,000,000: 7s. Last read position: chr10:32,305,787 INFO 2026-05-29 00:02:09 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 01:32:12s. Time for last 1,000,000: 21s. Last read position: chr10:43,119,557 INFO 2026-05-29 00:02:17 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 01:32:20s. Time for last 1,000,000: 7s. Last read position: chr10:49,967,763 INFO 2026-05-29 00:02:27 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 01:32:30s. Time for last 1,000,000: 10s. Last read position: chr10:67,906,907 INFO 2026-05-29 00:02:44 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 01:32:47s. Time for last 1,000,000: 17s. Last read position: chr10:70,099,996 INFO 2026-05-29 00:02:59 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 01:33:02s. Time for last 1,000,000: 14s. Last read position: chr10:73,249,208 INFO 2026-05-29 00:03:18 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 01:33:21s. Time for last 1,000,000: 19s. Last read position: chr10:78,013,772 INFO 2026-05-29 00:03:26 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 01:33:29s. Time for last 1,000,000: 8s. Last read position: chr10:87,152,080 INFO 2026-05-29 00:03:44 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 01:33:47s. Time for last 1,000,000: 17s. Last read position: chr10:92,606,649 INFO 2026-05-29 00:03:59 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 01:34:02s. Time for last 1,000,000: 15s. Last read position: chr10:97,430,491 INFO 2026-05-29 00:04:08 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 01:34:11s. Time for last 1,000,000: 8s. Last read position: chr10:100,950,710 INFO 2026-05-29 00:04:33 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 01:34:36s. Time for last 1,000,000: 25s. Last read position: chr10:102,380,299 INFO 2026-05-29 00:04:48 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 01:34:51s. Time for last 1,000,000: 14s. Last read position: chr10:109,915,011 INFO 2026-05-29 00:04:58 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 01:35:01s. Time for last 1,000,000: 10s. Last read position: chr10:117,005,022 INFO 2026-05-29 00:05:06 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 01:35:09s. Time for last 1,000,000: 8s. Last read position: chr10:120,866,719 INFO 2026-05-29 00:05:15 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 01:35:18s. Time for last 1,000,000: 9s. Last read position: chr10:128,105,391 INFO 2026-05-29 00:05:22 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 01:35:25s. Time for last 1,000,000: 6s. Last read position: chr10:132,404,852 INFO 2026-05-29 00:05:33 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 01:35:36s. Time for last 1,000,000: 11s. Last read position: chr11:824,660 INFO 2026-05-29 00:05:51 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 01:35:54s. Time for last 1,000,000: 17s. Last read position: chr11:6,401,591 INFO 2026-05-29 00:06:09 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 01:36:12s. Time for last 1,000,000: 18s. Last read position: chr11:10,766,677 INFO 2026-05-29 00:06:25 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 01:36:28s. Time for last 1,000,000: 16s. Last read position: chr11:18,339,597 INFO 2026-05-29 00:06:38 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 01:36:41s. Time for last 1,000,000: 13s. Last read position: chr11:32,594,960 INFO 2026-05-29 00:06:50 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 01:36:53s. Time for last 1,000,000: 12s. Last read position: chr11:34,076,452 INFO 2026-05-29 00:07:07 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 01:37:10s. Time for last 1,000,000: 17s. Last read position: chr11:34,916,656 INFO 2026-05-29 00:07:18 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 01:37:21s. Time for last 1,000,000: 10s. Last read position: chr11:44,126,823 INFO 2026-05-29 00:07:35 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 01:37:38s. Time for last 1,000,000: 16s. Last read position: chr11:46,383,503 INFO 2026-05-29 00:07:53 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 01:37:56s. Time for last 1,000,000: 18s. Last read position: chr11:46,809,742 INFO 2026-05-29 00:08:17 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 01:38:20s. Time for last 1,000,000: 23s. Last read position: chr11:47,425,897 INFO 2026-05-29 00:08:30 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 01:38:33s. Time for last 1,000,000: 13s. Last read position: chr11:57,309,324 INFO 2026-05-29 00:08:51 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 01:38:54s. Time for last 1,000,000: 21s. Last read position: chr11:59,639,103 INFO 2026-05-29 00:09:17 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 01:39:20s. Time for last 1,000,000: 25s. Last read position: chr11:61,779,378 INFO 2026-05-29 00:09:35 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 01:39:38s. Time for last 1,000,000: 18s. Last read position: chr11:61,964,619 INFO 2026-05-29 00:09:45 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 01:39:48s. Time for last 1,000,000: 10s. Last read position: chr11:62,639,057 INFO 2026-05-29 00:10:02 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 01:40:05s. Time for last 1,000,000: 16s. Last read position: chr11:63,750,053 INFO 2026-05-29 00:10:14 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 01:40:17s. Time for last 1,000,000: 11s. Last read position: chr11:64,260,091 INFO 2026-05-29 00:10:27 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 01:40:31s. Time for last 1,000,000: 13s. Last read position: chr11:65,108,200 INFO 2026-05-29 00:10:41 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 01:40:44s. Time for last 1,000,000: 13s. Last read position: chr11:65,598,495 INFO 2026-05-29 00:10:55 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 01:40:58s. Time for last 1,000,000: 13s. Last read position: chr11:66,000,078 INFO 2026-05-29 00:11:06 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 01:41:09s. Time for last 1,000,000: 11s. Last read position: chr11:66,593,663 INFO 2026-05-29 00:11:24 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 01:41:27s. Time for last 1,000,000: 17s. Last read position: chr11:67,435,048 INFO 2026-05-29 00:11:38 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 01:41:41s. Time for last 1,000,000: 14s. Last read position: chr11:68,892,516 INFO 2026-05-29 00:11:45 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 01:41:48s. Time for last 1,000,000: 6s. Last read position: chr11:69,643,885 INFO 2026-05-29 00:11:54 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 01:41:57s. Time for last 1,000,000: 9s. Last read position: chr11:71,438,985 INFO 2026-05-29 00:12:19 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 01:42:22s. Time for last 1,000,000: 24s. Last read position: chr11:73,805,065 INFO 2026-05-29 00:12:40 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 01:42:43s. Time for last 1,000,000: 20s. Last read position: chr11:77,622,553 INFO 2026-05-29 00:13:08 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 01:43:11s. Time for last 1,000,000: 27s. Last read position: chr11:85,635,768 INFO 2026-05-29 00:13:20 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 01:43:24s. Time for last 1,000,000: 12s. Last read position: chr11:94,869,251 INFO 2026-05-29 00:13:42 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 01:43:46s. Time for last 1,000,000: 22s. Last read position: chr11:103,243,694 INFO 2026-05-29 00:14:03 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 01:44:06s. Time for last 1,000,000: 20s. Last read position: chr11:111,985,266 INFO 2026-05-29 00:14:17 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 01:44:20s. Time for last 1,000,000: 14s. Last read position: chr11:118,401,701 INFO 2026-05-29 00:14:34 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 01:44:37s. Time for last 1,000,000: 16s. Last read position: chr11:119,023,361 INFO 2026-05-29 00:14:52 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 01:44:55s. Time for last 1,000,000: 17s. Last read position: chr11:123,057,806 INFO 2026-05-29 00:15:10 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 01:45:13s. Time for last 1,000,000: 17s. Last read position: chr11:126,264,190 INFO 2026-05-29 00:15:24 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 01:45:27s. Time for last 1,000,000: 13s. Last read position: chr11:134,261,281 INFO 2026-05-29 00:15:43 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 01:45:47s. Time for last 1,000,000: 19s. Last read position: chr12:2,864,325 INFO 2026-05-29 00:16:00 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 01:46:03s. Time for last 1,000,000: 16s. Last read position: chr12:6,581,666 INFO 2026-05-29 00:16:40 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 01:46:43s. Time for last 1,000,000: 39s. Last read position: chr12:6,921,654 INFO 2026-05-29 00:16:50 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 01:46:53s. Time for last 1,000,000: 9s. Last read position: chr12:9,427,455 INFO 2026-05-29 00:17:02 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 01:47:05s. Time for last 1,000,000: 12s. Last read position: chr12:14,475,878 INFO 2026-05-29 00:17:14 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 01:47:17s. Time for last 1,000,000: 11s. Last read position: chr12:25,225,675 INFO 2026-05-29 00:17:30 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 01:47:33s. Time for last 1,000,000: 16s. Last read position: chr12:42,313,101 INFO 2026-05-29 00:17:55 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 01:47:58s. Time for last 1,000,000: 25s. Last read position: chr12:44,816,034 INFO 2026-05-29 00:18:16 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 01:48:19s. Time for last 1,000,000: 20s. Last read position: chr12:47,798,206 INFO 2026-05-29 00:18:31 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 01:48:34s. Time for last 1,000,000: 14s. Last read position: chr12:49,046,708 INFO 2026-05-29 00:18:38 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 01:48:41s. Time for last 1,000,000: 7s. Last read position: chr12:49,185,470 INFO 2026-05-29 00:18:53 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 01:48:56s. Time for last 1,000,000: 14s. Last read position: chr12:49,999,673 INFO 2026-05-29 00:19:10 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 01:49:13s. Time for last 1,000,000: 17s. Last read position: chr12:53,159,640 INFO 2026-05-29 00:19:30 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 01:49:33s. Time for last 1,000,000: 20s. Last read position: chr12:53,483,872 INFO 2026-05-29 00:19:58 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 01:50:01s. Time for last 1,000,000: 27s. Last read position: chr12:54,343,279 INFO 2026-05-29 00:20:10 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 01:50:13s. Time for last 1,000,000: 12s. Last read position: chr12:55,823,501 INFO 2026-05-29 00:20:25 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 01:50:28s. Time for last 1,000,000: 14s. Last read position: chr12:56,282,880 INFO 2026-05-29 00:20:41 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 01:50:44s. Time for last 1,000,000: 16s. Last read position: chr12:56,688,030 INFO 2026-05-29 00:21:01 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 01:51:04s. Time for last 1,000,000: 20s. Last read position: chr12:57,106,553 INFO 2026-05-29 00:21:23 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 01:51:26s. Time for last 1,000,000: 21s. Last read position: chr12:57,498,447 INFO 2026-05-29 00:21:42 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 01:51:45s. Time for last 1,000,000: 19s. Last read position: chr12:62,384,086 INFO 2026-05-29 00:21:57 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 01:52:00s. Time for last 1,000,000: 14s. Last read position: chr12:68,733,452 INFO 2026-05-29 00:22:15 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 01:52:18s. Time for last 1,000,000: 17s. Last read position: chr12:72,273,180 INFO 2026-05-29 00:22:40 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 01:52:43s. Time for last 1,000,000: 25s. Last read position: chr12:89,350,665 INFO 2026-05-29 00:22:52 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 01:52:55s. Time for last 1,000,000: 12s. Last read position: chr12:96,917,727 INFO 2026-05-29 00:23:07 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 01:53:10s. Time for last 1,000,000: 14s. Last read position: chr12:103,934,179 INFO 2026-05-29 00:23:32 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 01:53:35s. Time for last 1,000,000: 25s. Last read position: chr12:108,788,317 INFO 2026-05-29 00:23:46 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 01:53:49s. Time for last 1,000,000: 14s. Last read position: chr12:110,742,820 INFO 2026-05-29 00:24:10 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 01:54:13s. Time for last 1,000,000: 23s. Last read position: chr12:112,408,418 INFO 2026-05-29 00:24:29 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 01:54:32s. Time for last 1,000,000: 18s. Last read position: chr12:118,036,365 INFO 2026-05-29 00:24:50 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 01:54:53s. Time for last 1,000,000: 21s. Last read position: chr12:120,496,133 INFO 2026-05-29 00:25:04 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 01:55:07s. Time for last 1,000,000: 13s. Last read position: chr12:122,208,437 INFO 2026-05-29 00:25:21 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 01:55:24s. Time for last 1,000,000: 17s. Last read position: chr12:123,597,419 INFO 2026-05-29 00:25:46 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 01:55:49s. Time for last 1,000,000: 24s. Last read position: chr12:124,968,496 INFO 2026-05-29 00:25:56 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 01:55:59s. Time for last 1,000,000: 10s. Last read position: chr12:132,104,965 INFO 2026-05-29 00:26:13 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 01:56:16s. Time for last 1,000,000: 16s. Last read position: chr12:132,825,713 INFO 2026-05-29 00:26:26 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 01:56:29s. Time for last 1,000,000: 13s. Last read position: chr13:21,140,888 INFO 2026-05-29 00:26:33 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 01:56:36s. Time for last 1,000,000: 6s. Last read position: chr13:25,287,242 INFO 2026-05-29 00:26:40 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 01:56:43s. Time for last 1,000,000: 7s. Last read position: chr13:31,137,470 INFO 2026-05-29 00:26:56 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 01:56:59s. Time for last 1,000,000: 15s. Last read position: chr13:36,894,467 INFO 2026-05-29 00:27:07 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 01:57:10s. Time for last 1,000,000: 11s. Last read position: chr13:45,072,221 INFO 2026-05-29 00:27:19 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 01:57:22s. Time for last 1,000,000: 12s. Last read position: chr13:46,359,508 INFO 2026-05-29 00:27:40 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 01:57:43s. Time for last 1,000,000: 20s. Last read position: chr13:52,154,116 INFO 2026-05-29 00:27:49 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 01:57:52s. Time for last 1,000,000: 8s. Last read position: chr13:75,530,148 INFO 2026-05-29 00:28:05 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 01:58:08s. Time for last 1,000,000: 15s. Last read position: chr13:97,976,732 INFO 2026-05-29 00:28:31 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 01:58:34s. Time for last 1,000,000: 26s. Last read position: chr13:99,982,311 INFO 2026-05-29 00:28:40 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 01:58:43s. Time for last 1,000,000: 9s. Last read position: chr13:109,783,627 INFO 2026-05-29 00:28:51 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 01:58:54s. Time for last 1,000,000: 11s. Last read position: chr13:110,901,616 INFO 2026-05-29 00:29:04 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 01:59:07s. Time for last 1,000,000: 12s. Last read position: chr14:20,457,316 INFO 2026-05-29 00:29:25 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 01:59:28s. Time for last 1,000,000: 20s. Last read position: chr14:21,408,466 INFO 2026-05-29 00:29:39 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 01:59:42s. Time for last 1,000,000: 13s. Last read position: chr14:22,924,035 INFO 2026-05-29 00:29:52 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 01:59:55s. Time for last 1,000,000: 13s. Last read position: chr14:23,531,519 INFO 2026-05-29 00:30:11 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 02:00:14s. Time for last 1,000,000: 18s. Last read position: chr14:29,927,384 INFO 2026-05-29 00:30:38 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 02:00:41s. Time for last 1,000,000: 27s. Last read position: chr14:35,123,596 INFO 2026-05-29 00:30:50 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 02:00:53s. Time for last 1,000,000: 12s. Last read position: chr14:49,586,613 INFO 2026-05-29 00:30:54 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 02:00:57s. Time for last 1,000,000: 4s. Last read position: chr14:49,862,671 INFO 2026-05-29 00:31:07 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 02:01:10s. Time for last 1,000,000: 12s. Last read position: chr14:54,775,030 INFO 2026-05-29 00:31:24 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 02:01:27s. Time for last 1,000,000: 16s. Last read position: chr14:58,427,046 INFO 2026-05-29 00:31:59 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 02:02:02s. Time for last 1,000,000: 35s. Last read position: chr14:64,130,233 INFO 2026-05-29 00:32:43 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 02:02:46s. Time for last 1,000,000: 43s. Last read position: chr14:67,769,602 INFO 2026-05-29 00:33:01 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 02:03:04s. Time for last 1,000,000: 18s. Last read position: chr14:72,998,006 INFO 2026-05-29 00:33:15 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 02:03:18s. Time for last 1,000,000: 13s. Last read position: chr14:75,063,469 INFO 2026-05-29 00:33:28 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 02:03:31s. Time for last 1,000,000: 12s. Last read position: chr14:85,623,212 INFO 2026-05-29 00:33:42 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 02:03:45s. Time for last 1,000,000: 14s. Last read position: chr14:93,183,983 INFO 2026-05-29 00:34:08 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 02:04:11s. Time for last 1,000,000: 25s. Last read position: chr14:99,175,522 INFO 2026-05-29 00:34:35 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 02:04:38s. Time for last 1,000,000: 27s. Last read position: chr14:101,988,754 INFO 2026-05-29 00:38:21 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 02:08:24s. Time for last 1,000,000: 226s. Last read position: chr14:102,084,977 INFO 2026-05-29 00:38:46 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 02:08:49s. Time for last 1,000,000: 24s. Last read position: chr14:103,679,462 INFO 2026-05-29 00:39:11 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 02:09:14s. Time for last 1,000,000: 25s. Last read position: chr14:105,492,075 INFO 2026-05-29 00:40:09 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 02:10:12s. Time for last 1,000,000: 57s. Last read position: chr15:28,612,083 INFO 2026-05-29 00:40:22 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 02:10:25s. Time for last 1,000,000: 12s. Last read position: chr15:34,527,605 INFO 2026-05-29 00:40:33 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 02:10:36s. Time for last 1,000,000: 11s. Last read position: chr15:40,899,874 INFO 2026-05-29 00:40:49 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 02:10:52s. Time for last 1,000,000: 15s. Last read position: chr15:41,846,758 INFO 2026-05-29 00:41:04 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 02:11:07s. Time for last 1,000,000: 15s. Last read position: chr15:43,522,616 INFO 2026-05-29 00:41:11 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 02:11:14s. Time for last 1,000,000: 6s. Last read position: chr15:43,851,116 INFO 2026-05-29 00:41:25 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 02:11:28s. Time for last 1,000,000: 14s. Last read position: chr15:48,878,640 INFO 2026-05-29 00:41:40 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 02:11:43s. Time for last 1,000,000: 14s. Last read position: chr15:56,098,263 INFO 2026-05-29 00:42:10 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 02:12:13s. Time for last 1,000,000: 30s. Last read position: chr15:57,904,922 INFO 2026-05-29 00:42:33 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 02:12:36s. Time for last 1,000,000: 22s. Last read position: chr15:64,081,110 INFO 2026-05-29 00:42:43 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 02:12:46s. Time for last 1,000,000: 10s. Last read position: chr15:66,499,603 INFO 2026-05-29 00:43:00 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 02:13:03s. Time for last 1,000,000: 16s. Last read position: chr15:70,664,683 INFO 2026-05-29 00:43:17 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 02:13:20s. Time for last 1,000,000: 16s. Last read position: chr15:73,926,772 INFO 2026-05-29 00:43:33 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 02:13:36s. Time for last 1,000,000: 16s. Last read position: chr15:75,389,711 INFO 2026-05-29 00:43:46 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 02:13:49s. Time for last 1,000,000: 12s. Last read position: chr15:78,292,705 INFO 2026-05-29 00:44:00 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 02:14:03s. Time for last 1,000,000: 13s. Last read position: chr15:84,512,150 INFO 2026-05-29 00:44:21 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 02:14:24s. Time for last 1,000,000: 21s. Last read position: chr15:89,601,886 INFO 2026-05-29 00:44:36 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 02:14:39s. Time for last 1,000,000: 14s. Last read position: chr15:90,981,876 INFO 2026-05-29 00:44:48 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 02:14:51s. Time for last 1,000,000: 11s. Last read position: chr16:54,049 INFO 2026-05-29 00:45:03 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 02:15:06s. Time for last 1,000,000: 15s. Last read position: chr16:666,112 INFO 2026-05-29 00:45:27 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 02:15:30s. Time for last 1,000,000: 24s. Last read position: chr16:1,350,920 INFO 2026-05-29 00:45:40 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 02:15:43s. Time for last 1,000,000: 12s. Last read position: chr16:2,000,245 INFO 2026-05-29 00:46:20 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 02:16:23s. Time for last 1,000,000: 40s. Last read position: chr16:2,234,681 INFO 2026-05-29 00:46:35 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 02:16:38s. Time for last 1,000,000: 15s. Last read position: chr16:2,765,074 INFO 2026-05-29 00:46:52 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 02:16:55s. Time for last 1,000,000: 16s. Last read position: chr16:3,590,698 INFO 2026-05-29 00:47:08 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 02:17:11s. Time for last 1,000,000: 16s. Last read position: chr16:4,822,864 INFO 2026-05-29 00:47:24 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 02:17:27s. Time for last 1,000,000: 15s. Last read position: chr16:11,838,104 INFO 2026-05-29 00:47:35 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 02:17:38s. Time for last 1,000,000: 10s. Last read position: chr16:14,929,436 INFO 2026-05-29 00:47:52 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 02:17:56s. Time for last 1,000,000: 17s. Last read position: chr16:16,281,253 INFO 2026-05-29 00:47:55 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 02:17:58s. Time for last 1,000,000: 2s. Last read position: chr16:18,340,398 INFO 2026-05-29 00:48:01 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 02:18:04s. Time for last 1,000,000: 5s. Last read position: chr16:18,793,335 INFO 2026-05-29 00:48:11 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 02:18:14s. Time for last 1,000,000: 10s. Last read position: chr16:21,456,330 INFO 2026-05-29 00:48:19 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 02:18:22s. Time for last 1,000,000: 7s. Last read position: chr16:22,493,585 INFO 2026-05-29 00:48:26 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 02:18:29s. Time for last 1,000,000: 6s. Last read position: chr16:23,836,339 INFO 2026-05-29 00:48:38 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 02:18:41s. Time for last 1,000,000: 11s. Last read position: chr16:27,492,377 INFO 2026-05-29 00:48:49 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 02:18:52s. Time for last 1,000,000: 11s. Last read position: chr16:28,823,323 INFO 2026-05-29 00:49:05 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 02:19:08s. Time for last 1,000,000: 16s. Last read position: chr16:29,483,921 INFO 2026-05-29 00:49:14 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 02:19:17s. Time for last 1,000,000: 8s. Last read position: chr16:29,986,880 INFO 2026-05-29 00:49:25 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 02:19:28s. Time for last 1,000,000: 11s. Last read position: chr16:30,369,271 INFO 2026-05-29 00:49:35 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 02:19:38s. Time for last 1,000,000: 9s. Last read position: chr16:30,768,385 INFO 2026-05-29 00:49:43 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 02:19:46s. Time for last 1,000,000: 8s. Last read position: chr16:31,183,976 INFO 2026-05-29 00:49:58 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 02:20:01s. Time for last 1,000,000: 14s. Last read position: chr16:31,190,389 INFO 2026-05-29 00:50:11 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 02:20:14s. Time for last 1,000,000: 13s. Last read position: chr16:48,562,140 INFO 2026-05-29 00:50:24 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 02:20:27s. Time for last 1,000,000: 13s. Last read position: chr16:55,810,588 INFO 2026-05-29 00:50:39 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 02:20:42s. Time for last 1,000,000: 15s. Last read position: chr16:57,771,614 INFO 2026-05-29 00:51:00 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 02:21:03s. Time for last 1,000,000: 20s. Last read position: chr16:66,813,586 INFO 2026-05-29 00:51:16 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 02:21:19s. Time for last 1,000,000: 15s. Last read position: chr16:67,877,787 INFO 2026-05-29 00:51:31 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 02:21:34s. Time for last 1,000,000: 14s. Last read position: chr16:69,659,762 INFO 2026-05-29 00:52:00 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 02:22:03s. Time for last 1,000,000: 29s. Last read position: chr16:70,571,685 INFO 2026-05-29 00:52:12 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 02:22:15s. Time for last 1,000,000: 11s. Last read position: chr16:74,451,681 INFO 2026-05-29 00:52:31 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 02:22:34s. Time for last 1,000,000: 18s. Last read position: chr16:75,612,345 INFO 2026-05-29 00:52:44 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 02:22:47s. Time for last 1,000,000: 13s. Last read position: chr16:84,988,762 INFO 2026-05-29 00:52:54 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 02:22:57s. Time for last 1,000,000: 9s. Last read position: chr16:88,699,622 INFO 2026-05-29 00:53:09 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 02:23:12s. Time for last 1,000,000: 15s. Last read position: chr16:89,291,013 INFO 2026-05-29 00:53:37 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 02:23:40s. Time for last 1,000,000: 28s. Last read position: chr16:89,908,463 INFO 2026-05-29 00:53:56 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 02:23:59s. Time for last 1,000,000: 19s. Last read position: chr17:1,354,333 INFO 2026-05-29 00:54:08 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 02:24:11s. Time for last 1,000,000: 11s. Last read position: chr17:1,661,921 INFO 2026-05-29 00:54:24 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 02:24:27s. Time for last 1,000,000: 15s. Last read position: chr17:2,689,875 INFO 2026-05-29 00:54:39 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 02:24:42s. Time for last 1,000,000: 14s. Last read position: chr17:4,720,435 INFO 2026-05-29 00:54:50 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 02:24:53s. Time for last 1,000,000: 11s. Last read position: chr17:6,450,055 INFO 2026-05-29 00:55:08 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 02:25:11s. Time for last 1,000,000: 17s. Last read position: chr17:7,314,145 INFO 2026-05-29 00:55:19 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 02:25:23s. Time for last 1,000,000: 11s. Last read position: chr17:7,513,639 INFO 2026-05-29 00:55:37 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 02:25:40s. Time for last 1,000,000: 17s. Last read position: chr17:7,893,374 INFO 2026-05-29 00:55:57 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 02:26:00s. Time for last 1,000,000: 19s. Last read position: chr17:8,443,319 INFO 2026-05-29 00:56:17 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 02:26:20s. Time for last 1,000,000: 20s. Last read position: chr17:16,146,376 INFO 2026-05-29 00:56:32 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 02:26:35s. Time for last 1,000,000: 15s. Last read position: chr17:17,816,460 INFO 2026-05-29 00:56:48 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 02:26:51s. Time for last 1,000,000: 15s. Last read position: chr17:19,571,477 INFO 2026-05-29 00:57:01 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 02:27:04s. Time for last 1,000,000: 13s. Last read position: chr17:28,616,722 INFO 2026-05-29 00:57:18 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 02:27:21s. Time for last 1,000,000: 16s. Last read position: chr17:29,286,978 INFO 2026-05-29 00:57:34 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 02:27:37s. Time for last 1,000,000: 16s. Last read position: chr17:31,937,476 INFO 2026-05-29 00:57:48 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 02:27:51s. Time for last 1,000,000: 14s. Last read position: chr17:36,486,743 INFO 2026-05-29 00:58:02 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 02:28:05s. Time for last 1,000,000: 13s. Last read position: chr17:39,723,934 INFO 2026-05-29 00:58:19 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 02:28:22s. Time for last 1,000,000: 16s. Last read position: chr17:42,021,604 INFO 2026-05-29 00:58:39 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 02:28:42s. Time for last 1,000,000: 20s. Last read position: chr17:44,211,628 INFO 2026-05-29 00:58:54 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 02:28:57s. Time for last 1,000,000: 14s. Last read position: chr17:47,050,236 INFO 2026-05-29 00:59:10 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 02:29:13s. Time for last 1,000,000: 15s. Last read position: chr17:48,999,133 INFO 2026-05-29 00:59:20 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 02:29:23s. Time for last 1,000,000: 10s. Last read position: chr17:50,385,123 INFO 2026-05-29 00:59:45 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 02:29:48s. Time for last 1,000,000: 24s. Last read position: chr17:57,979,212 INFO 2026-05-29 00:59:56 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 02:29:59s. Time for last 1,000,000: 11s. Last read position: chr17:59,661,634 INFO 2026-05-29 01:00:20 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 02:30:23s. Time for last 1,000,000: 23s. Last read position: chr17:59,731,497 INFO 2026-05-29 01:00:34 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 02:30:37s. Time for last 1,000,000: 14s. Last read position: chr17:63,699,301 INFO 2026-05-29 01:00:56 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 02:30:59s. Time for last 1,000,000: 22s. Last read position: chr17:67,218,643 INFO 2026-05-29 01:01:18 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 02:31:21s. Time for last 1,000,000: 22s. Last read position: chr17:73,209,543 INFO 2026-05-29 01:01:33 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 02:31:36s. Time for last 1,000,000: 14s. Last read position: chr17:75,569,080 INFO 2026-05-29 01:01:47 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 02:31:50s. Time for last 1,000,000: 14s. Last read position: chr17:76,737,091 INFO 2026-05-29 01:02:02 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 02:32:05s. Time for last 1,000,000: 14s. Last read position: chr17:80,010,531 INFO 2026-05-29 01:02:17 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 02:32:20s. Time for last 1,000,000: 15s. Last read position: chr17:81,459,505 INFO 2026-05-29 01:02:52 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 02:32:55s. Time for last 1,000,000: 34s. Last read position: chr17:81,868,927 INFO 2026-05-29 01:03:07 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 02:33:10s. Time for last 1,000,000: 15s. Last read position: chr17:82,084,579 INFO 2026-05-29 01:03:26 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 02:33:29s. Time for last 1,000,000: 18s. Last read position: chr17:83,005,169 INFO 2026-05-29 01:03:41 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 02:33:44s. Time for last 1,000,000: 15s. Last read position: chr18:3,814,251 INFO 2026-05-29 01:03:51 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 02:33:54s. Time for last 1,000,000: 10s. Last read position: chr18:12,329,145 INFO 2026-05-29 01:04:06 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 02:34:09s. Time for last 1,000,000: 14s. Last read position: chr18:24,181,219 INFO 2026-05-29 01:04:22 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 02:34:25s. Time for last 1,000,000: 16s. Last read position: chr18:45,063,600 INFO 2026-05-29 01:04:39 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 02:34:42s. Time for last 1,000,000: 17s. Last read position: chr18:50,269,660 INFO 2026-05-29 01:05:11 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 02:35:14s. Time for last 1,000,000: 32s. Last read position: chr18:56,789,893 INFO 2026-05-29 01:05:31 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 02:35:34s. Time for last 1,000,000: 19s. Last read position: chr18:62,523,382 INFO 2026-05-29 01:05:42 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 02:35:45s. Time for last 1,000,000: 11s. Last read position: chr18:76,947,485 INFO 2026-05-29 01:05:54 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 02:35:57s. Time for last 1,000,000: 12s. Last read position: chr19:652,243 INFO 2026-05-29 01:06:11 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 02:36:14s. Time for last 1,000,000: 16s. Last read position: chr19:1,105,773 INFO 2026-05-29 01:06:26 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 02:36:29s. Time for last 1,000,000: 15s. Last read position: chr19:1,440,145 INFO 2026-05-29 01:06:39 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 02:36:42s. Time for last 1,000,000: 12s. Last read position: chr19:1,979,923 INFO 2026-05-29 01:06:50 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 02:36:53s. Time for last 1,000,000: 10s. Last read position: chr19:2,431,782 INFO 2026-05-29 01:07:01 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 02:37:04s. Time for last 1,000,000: 10s. Last read position: chr19:3,613,117 INFO 2026-05-29 01:07:10 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 02:37:13s. Time for last 1,000,000: 8s. Last read position: chr19:4,523,919 INFO 2026-05-29 01:07:25 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 02:37:28s. Time for last 1,000,000: 14s. Last read position: chr19:5,229,599 INFO 2026-05-29 01:07:43 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 02:37:46s. Time for last 1,000,000: 18s. Last read position: chr19:5,917,934 INFO 2026-05-29 01:07:56 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 02:38:00s. Time for last 1,000,000: 13s. Last read position: chr19:7,519,520 INFO 2026-05-29 01:08:07 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 02:38:10s. Time for last 1,000,000: 10s. Last read position: chr19:8,485,827 INFO 2026-05-29 01:08:37 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 02:38:40s. Time for last 1,000,000: 29s. Last read position: chr19:10,159,677 INFO 2026-05-29 01:09:07 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 02:39:10s. Time for last 1,000,000: 30s. Last read position: chr19:10,682,573 INFO 2026-05-29 01:10:22 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 02:40:25s. Time for last 1,000,000: 75s. Last read position: chr19:11,105,244 INFO 2026-05-29 01:10:35 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 02:40:38s. Time for last 1,000,000: 12s. Last read position: chr19:12,701,817 INFO 2026-05-29 01:10:50 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 02:40:53s. Time for last 1,000,000: 15s. Last read position: chr19:13,104,972 INFO 2026-05-29 01:11:00 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 02:41:03s. Time for last 1,000,000: 10s. Last read position: chr19:14,161,317 INFO 2026-05-29 01:11:14 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 02:41:17s. Time for last 1,000,000: 13s. Last read position: chr19:15,239,391 INFO 2026-05-29 01:11:27 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 02:41:30s. Time for last 1,000,000: 12s. Last read position: chr19:15,372,923 INFO 2026-05-29 01:11:45 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 02:41:48s. Time for last 1,000,000: 17s. Last read position: chr19:17,102,460 INFO 2026-05-29 01:11:58 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 02:42:01s. Time for last 1,000,000: 13s. Last read position: chr19:17,998,270 INFO 2026-05-29 01:12:10 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 02:42:13s. Time for last 1,000,000: 11s. Last read position: chr19:18,599,631 INFO 2026-05-29 01:12:22 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 02:42:25s. Time for last 1,000,000: 12s. Last read position: chr19:19,498,482 INFO 2026-05-29 01:12:31 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 02:42:34s. Time for last 1,000,000: 9s. Last read position: chr19:32,602,039 INFO 2026-05-29 01:12:44 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 02:42:47s. Time for last 1,000,000: 12s. Last read position: chr19:35,270,515 INFO 2026-05-29 01:13:06 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 02:43:09s. Time for last 1,000,000: 21s. Last read position: chr19:36,141,137 INFO 2026-05-29 01:13:19 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 02:43:22s. Time for last 1,000,000: 12s. Last read position: chr19:38,845,692 INFO 2026-05-29 01:13:33 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 02:43:36s. Time for last 1,000,000: 14s. Last read position: chr19:39,474,249 INFO 2026-05-29 01:13:49 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 02:43:52s. Time for last 1,000,000: 15s. Last read position: chr19:40,365,882 INFO 2026-05-29 01:14:14 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 02:44:17s. Time for last 1,000,000: 24s. Last read position: chr19:41,304,078 INFO 2026-05-29 01:14:30 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 02:44:33s. Time for last 1,000,000: 16s. Last read position: chr19:42,248,804 INFO 2026-05-29 01:14:41 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 02:44:44s. Time for last 1,000,000: 11s. Last read position: chr19:42,300,263 INFO 2026-05-29 01:14:51 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 02:44:55s. Time for last 1,000,000: 10s. Last read position: chr19:44,992,650 INFO 2026-05-29 01:15:05 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 02:45:08s. Time for last 1,000,000: 13s. Last read position: chr19:45,855,678 INFO 2026-05-29 01:15:15 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 02:45:18s. Time for last 1,000,000: 10s. Last read position: chr19:47,067,305 INFO 2026-05-29 01:15:31 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 02:45:34s. Time for last 1,000,000: 15s. Last read position: chr19:48,389,560 INFO 2026-05-29 01:15:42 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 02:45:45s. Time for last 1,000,000: 10s. Last read position: chr19:49,107,686 INFO 2026-05-29 01:15:58 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 02:46:01s. Time for last 1,000,000: 16s. Last read position: chr19:49,526,007 INFO 2026-05-29 01:16:08 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 02:46:11s. Time for last 1,000,000: 10s. Last read position: chr19:49,691,760 INFO 2026-05-29 01:16:25 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 02:46:28s. Time for last 1,000,000: 16s. Last read position: chr19:49,932,736 INFO 2026-05-29 01:16:35 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 02:46:38s. Time for last 1,000,000: 10s. Last read position: chr19:52,190,123 INFO 2026-05-29 01:16:47 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 02:46:50s. Time for last 1,000,000: 12s. Last read position: chr19:54,461,511 INFO 2026-05-29 01:16:55 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 02:46:58s. Time for last 1,000,000: 8s. Last read position: chr19:55,614,733 INFO 2026-05-29 01:17:14 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 02:47:17s. Time for last 1,000,000: 18s. Last read position: chr19:56,816,795 INFO 2026-05-29 01:17:30 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 02:47:33s. Time for last 1,000,000: 16s. Last read position: chr19:58,243,966 INFO 2026-05-29 01:17:41 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 02:47:44s. Time for last 1,000,000: 10s. Last read position: chr20:298,690 INFO 2026-05-29 01:17:58 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 02:48:01s. Time for last 1,000,000: 17s. Last read position: chr20:2,658,030 INFO 2026-05-29 01:18:06 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 02:48:09s. Time for last 1,000,000: 8s. Last read position: chr20:4,857,028 INFO 2026-05-29 01:18:15 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 02:48:18s. Time for last 1,000,000: 9s. Last read position: chr20:17,641,812 INFO 2026-05-29 01:18:25 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 02:48:28s. Time for last 1,000,000: 9s. Last read position: chr20:21,513,484 INFO 2026-05-29 01:18:36 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 02:48:39s. Time for last 1,000,000: 11s. Last read position: chr20:32,434,642 INFO 2026-05-29 01:18:50 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 02:48:53s. Time for last 1,000,000: 14s. Last read position: chr20:34,742,979 INFO 2026-05-29 01:19:13 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 02:49:16s. Time for last 1,000,000: 22s. Last read position: chr20:36,431,793 INFO 2026-05-29 01:19:24 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 02:49:27s. Time for last 1,000,000: 10s. Last read position: chr20:40,269,680 INFO 2026-05-29 01:19:34 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 02:49:38s. Time for last 1,000,000: 10s. Last read position: chr20:44,054,513 INFO 2026-05-29 01:19:52 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 02:49:55s. Time for last 1,000,000: 17s. Last read position: chr20:46,373,510 INFO 2026-05-29 01:20:06 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 02:50:09s. Time for last 1,000,000: 13s. Last read position: chr20:49,839,545 INFO 2026-05-29 01:20:13 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 02:50:16s. Time for last 1,000,000: 7s. Last read position: chr20:57,393,278 INFO 2026-05-29 01:20:42 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 02:50:45s. Time for last 1,000,000: 29s. Last read position: chr20:62,197,900 INFO 2026-05-29 01:20:52 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 02:50:55s. Time for last 1,000,000: 9s. Last read position: chr20:63,661,412 INFO 2026-05-29 01:21:00 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 02:51:04s. Time for last 1,000,000: 8s. Last read position: chr21:7,438,722 INFO 2026-05-29 01:21:02 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 02:51:05s. Time for last 1,000,000: 1s. Last read position: chr21:8,215,008 INFO 2026-05-29 01:21:03 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 02:51:06s. Time for last 1,000,000: 1s. Last read position: chr21:8,252,299 INFO 2026-05-29 01:21:04 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 02:51:07s. Time for last 1,000,000: 0s. Last read position: chr21:8,260,318 INFO 2026-05-29 01:21:05 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 02:51:08s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,119 INFO 2026-05-29 01:21:07 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 02:51:10s. Time for last 1,000,000: 1s. Last read position: chr21:8,438,350 INFO 2026-05-29 01:21:08 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 02:51:11s. Time for last 1,000,000: 0s. Last read position: chr21:8,444,108 INFO 2026-05-29 01:21:12 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 02:51:15s. Time for last 1,000,000: 3s. Last read position: chr21:14,226,911 INFO 2026-05-29 01:21:25 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 02:51:28s. Time for last 1,000,000: 13s. Last read position: chr21:29,064,991 INFO 2026-05-29 01:21:37 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 02:51:40s. Time for last 1,000,000: 12s. Last read position: chr21:33,551,369 INFO 2026-05-29 01:22:01 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 02:52:04s. Time for last 1,000,000: 23s. Last read position: chr21:37,165,911 INFO 2026-05-29 01:22:23 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 02:52:26s. Time for last 1,000,000: 21s. Last read position: chr21:43,095,494 INFO 2026-05-29 01:22:32 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 02:52:35s. Time for last 1,000,000: 8s. Last read position: chr21:44,973,205 INFO 2026-05-29 01:22:47 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 02:52:50s. Time for last 1,000,000: 15s. Last read position: chr22:17,138,295 INFO 2026-05-29 01:23:00 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 02:53:03s. Time for last 1,000,000: 13s. Last read position: chr22:19,968,751 INFO 2026-05-29 01:23:13 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 02:53:16s. Time for last 1,000,000: 12s. Last read position: chr22:21,621,659 INFO 2026-05-29 01:23:29 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 02:53:32s. Time for last 1,000,000: 15s. Last read position: chr22:23,833,608 INFO 2026-05-29 01:23:42 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 02:53:45s. Time for last 1,000,000: 13s. Last read position: chr22:28,099,010 INFO 2026-05-29 01:24:03 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 02:54:06s. Time for last 1,000,000: 21s. Last read position: chr22:29,292,519 INFO 2026-05-29 01:24:22 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 02:54:25s. Time for last 1,000,000: 18s. Last read position: chr22:30,428,465 INFO 2026-05-29 01:24:43 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 02:54:46s. Time for last 1,000,000: 21s. Last read position: chr22:32,805,426 INFO 2026-05-29 01:24:54 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 02:54:57s. Time for last 1,000,000: 10s. Last read position: chr22:37,024,756 INFO 2026-05-29 01:25:09 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 02:55:12s. Time for last 1,000,000: 14s. Last read position: chr22:38,506,040 INFO 2026-05-29 01:25:17 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 02:55:20s. Time for last 1,000,000: 8s. Last read position: chr22:40,265,512 INFO 2026-05-29 01:25:32 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 02:55:35s. Time for last 1,000,000: 14s. Last read position: chr22:41,358,249 INFO 2026-05-29 01:25:48 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 02:55:51s. Time for last 1,000,000: 16s. Last read position: chr22:42,161,243 INFO 2026-05-29 01:25:57 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 02:56:00s. Time for last 1,000,000: 8s. Last read position: chr22:45,327,933 INFO 2026-05-29 01:26:06 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 02:56:09s. Time for last 1,000,000: 8s. Last read position: chr22:50,218,074 INFO 2026-05-29 01:26:21 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 02:56:24s. Time for last 1,000,000: 15s. Last read position: chr22:50,523,043 INFO 2026-05-29 01:26:25 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 02:56:29s. Time for last 1,000,000: 4s. Last read position: chrX:2,723,312 INFO 2026-05-29 01:26:34 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 02:56:37s. Time for last 1,000,000: 8s. Last read position: chrX:18,941,648 INFO 2026-05-29 01:26:47 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 02:56:50s. Time for last 1,000,000: 13s. Last read position: chrX:37,453,378 INFO 2026-05-29 01:27:11 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 02:57:14s. Time for last 1,000,000: 23s. Last read position: chrX:41,341,595 INFO 2026-05-29 01:27:49 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 02:57:52s. Time for last 1,000,000: 38s. Last read position: chrX:47,214,830 INFO 2026-05-29 01:28:05 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 02:58:08s. Time for last 1,000,000: 16s. Last read position: chrX:48,902,780 INFO 2026-05-29 01:28:14 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 02:58:17s. Time for last 1,000,000: 8s. Last read position: chrX:51,896,759 INFO 2026-05-29 01:28:24 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 02:58:27s. Time for last 1,000,000: 9s. Last read position: chrX:53,381,023 INFO 2026-05-29 01:28:52 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 02:58:55s. Time for last 1,000,000: 28s. Last read position: chrX:54,249,356 INFO 2026-05-29 01:29:03 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 02:59:06s. Time for last 1,000,000: 10s. Last read position: chrX:70,289,255 INFO 2026-05-29 01:29:28 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 02:59:31s. Time for last 1,000,000: 24s. Last read position: chrX:72,130,125 INFO 2026-05-29 01:29:52 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 02:59:55s. Time for last 1,000,000: 24s. Last read position: chrX:77,826,742 INFO 2026-05-29 01:29:59 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 03:00:02s. Time for last 1,000,000: 6s. Last read position: chrX:100,635,609 INFO 2026-05-29 01:30:08 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 03:00:11s. Time for last 1,000,000: 9s. Last read position: chrX:115,649,435 INFO 2026-05-29 01:30:27 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 03:00:30s. Time for last 1,000,000: 18s. Last read position: chrX:124,963,572 INFO 2026-05-29 01:30:39 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 03:00:42s. Time for last 1,000,000: 12s. Last read position: chrX:136,687,931 INFO 2026-05-29 01:30:52 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 03:00:55s. Time for last 1,000,000: 12s. Last read position: chrX:153,592,672 INFO 2026-05-29 01:31:05 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 03:01:08s. Time for last 1,000,000: 13s. Last read position: chrX:154,352,875 INFO 2026-05-29 01:31:41 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 03:01:44s. Time for last 1,000,000: 35s. Last read position: chrX:154,533,054 INFO 2026-05-29 01:31:45 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 03:01:48s. Time for last 1,000,000: 4s. Last read position: chrM:8,391 INFO 2026-05-29 01:31:46 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 03:01:49s. Time for last 1,000,000: 1s. Last read position: GL000220.1:112,597 INFO 2026-05-29 01:31:47 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 03:01:50s. Time for last 1,000,000: 0s. Last read position: GL000220.1:116,498 INFO 2026-05-29 01:31:48 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 03:01:51s. Time for last 1,000,000: 0s. Last read position: GL000220.1:156,922 INFO 2026-05-29 01:31:48 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 03:01:51s. Time for last 1,000,000: 0s. Last read position: GL000220.1:160,701 INFO 2026-05-29 01:31:49 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 03:01:52s. Time for last 1,000,000: 0s. Last read position: KI270733.1:129,639 INFO 2026-05-29 01:31:50 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 03:01:53s. Time for last 1,000,000: 0s. Last read position: KI270733.1:133,178 INFO 2026-05-29 01:31:51 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 03:01:54s. Time for last 1,000,000: 0s. Last read position: KI270733.1:173,514 INFO 2026-05-29 01:31:52 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 03:01:55s. Time for last 1,000,000: 0s. Last read position: KI270733.1:177,489 INFO 2026-05-29 01:31:53 SinglePassSamProgram Processed 637,000,000 records. Elapsed time: 03:01:56s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-05-29 01:31:54 SinglePassSamProgram Processed 638,000,000 records. Elapsed time: 03:01:57s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-05-29 01:31:54 SinglePassSamProgram Processed 639,000,000 records. Elapsed time: 03:01:57s. Time for last 1,000,000: 0s. Last read position: */* [Fri May 29 01:31:56 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 182.06 minutes. Runtime.totalMemory()=3425173504