Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/9fbeb399ad8501a1dfe1c2c262afd7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/9fbeb399ad8501a1dfe1c2c262afd7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/187435c61b476c305c7f293c446798/EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1_R2.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/187435c61b476c305c7f293c446798/EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1_R1.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory