Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/1f95a9196048b06b52fd3f38fd7dc5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/1f95a9196048b06b52fd3f38fd7dc5/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/66d335371a1e685e0765f255d24299/U118MG_FFPE_RNA_0001_B23LG7FLT4_3_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/66d335371a1e685e0765f255d24299/U118MG_FFPE_RNA_0001_B23LG7FLT4_3_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory