Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/4ac5eb3c7469eaeb3eec4d38088bb9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/4ac5eb3c7469eaeb3eec4d38088bb9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/4d478bdf3caca9a97e4f4c83c13217/NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3_R1.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/4d478bdf3caca9a97e4f4c83c13217/NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3_R2.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory