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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/5ec61cad7c55fbb3d0c55e58a25945/FFPE_HD789_01_RNA_0004_B23LG7FLT4_1.lc_extrap.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/39622827c6116cb02b25bafd63ef69/SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3.fastp.html
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/beffaedf5dc16fdddcfa1ed8e4ff99/NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2_combined_fusions_arriba_visualisation.pdf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/d1746c121994b686e9bbb9241910b1/NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1_trimmed_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/92265fcf9c5f3afd75f689a866e748/ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2_preseq_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/9ec4c73dfea0565fd64c88d1b5433d/OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/3575d5a391ae74573cfd1a2e45c0d1/FFPE_V4_0001_RNA_0001_B23LG7FLT4_2_seqtool_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/74abc86f6bfadb9603ca2811e0e1a3/BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/201a95e5b858895c4cce823557db43/KG1_FFPE_01_RNA_0003_B23LG7FLT4_2_rna_metrics.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/83619bba537cfc753b024480ae2d26/786-O_FFPE_RNA_0001_B23LG7FLT4_2_kallisto_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/c5d9f3d510bf2f920578e2378abb07/MCF7_FFPE_RNA_0001_B23LG7FLT4_1_contamination_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/64bb71db35614ee027015bc4586297/BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1.Log.final.out
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/cc7ff14e237729cc6aafc3c0c848b5/SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1.pos.DupRate.xls
==> STAGING COMPLETE (2544 inputs)


  /// MultiQC 🔍 | v1.21

|           multiqc | MultiQC Version v1.35 now available!
|           multiqc | Module(s) in config.run_modules are unknown: arriba
|           multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq
|           multiqc | Search path : /tmp/nxf.3aQF4dAcXZ
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 2581/2581  
|    custom_content | rseqc_extra_metrics: Found 96 General Statistics columns
|    custom_content | preseq_metrics: Found 96 General Statistics columns
|    custom_content | seqtools_metrics: Found 96 General Statistics columns
|    custom_content | rna_contamination: Found 96 General Statistics columns
|    custom_content | kallisto_qc_metrics: Found 96 General Statistics columns
|    custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html)
|    custom_content | nf-core-rnafusion-summary: Found 1 sample (html)
|          kallisto | Found 96 reports
|            picard | Found 96 InsertSizeMetrics reports
|            picard | Found 96 MarkDuplicates reports
|            picard | Found 96 RnaSeqMetrics reports
|            preseq | Found 96 reports
|             rseqc | Found 96 read_distribution reports
|             rseqc | Found 96 inner_distance reports
|             rseqc | Found 96 read_duplication reports
|             rseqc | Found 96 junction_annotation reports
|             rseqc | Found 96 junction_saturation reports
|             rseqc | Found 96 infer_experiment reports
|             rseqc | Found 96 bam_stat reports
|              star | Found 96 reports and 96 gene count files
|             fastp | Found 96 reports
|            fastqc | Found 384 reports
|            fastqc | Found 192 reports
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | Plots       : multiqc_plots
|           multiqc | MultiQC complete