Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/89c50b667e52ef889fb4787e14d66c/786-O_FFPE_RNA_0001_B23LG7FLT4_2.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-6ef41cd9-2e18-4687-842c-3f6f49c5643f/e6/b0f48d6d7a697674824d761d17ce05/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/192e0a605bcde0da3c1f7ad6bc28a9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/192e0a605bcde0da3c1f7ad6bc28a9/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/983aaff45912c69da69410ae686b36/786-O_FFPE_RNA_0001_B23LG7FLT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
LRP1B--AC078882.1
starfusion
arriba
CENPU--ENPP6
starfusion
arriba
LMNA--MEX3A
starfusion
DHX38--AMPD1
starfusion
arriba
BNC2--AL358117.1
starfusion
arriba
ZKSCAN7--KIF15
starfusion
arriba
AC008969.1--SMARCA4
starfusion
arriba
ARHGEF3--RRP9
starfusion
arriba
TLK2--AC240565.1
starfusion
GUSBP13--NAIP
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGC3
arriba
HIF1A--SNAPC1
arriba
TRIM33--TRIM33
arriba
TMED7--TICAM2
arriba
TVP23C--CDRT4
arriba
ATAD2B--KLHL29
arriba
CCDC169--SOHLH2
arriba
HMGB3P23--ACO1
arriba
RNA5SP281--ACO1
arriba

  0%|          | 0/28 [00:00<?, ?it/s]
Processing LRP1B--AC078882.1:   0%|          | 0/28 [00:00<?, ?it/s]
Processing LRP1B--AC078882.1:   4%|▎         | 1/28 [00:00<00:02,  9.26it/s]
Processing CENPU--ENPP6:   4%|▎         | 1/28 [00:00<00:02,  9.26it/s]     
Processing CENPU--ENPP6:   7%|▋         | 2/28 [00:00<00:02,  9.48it/s]
Processing LMNA--MEX3A:   7%|▋         | 2/28 [00:00<00:02,  9.48it/s] 
Processing LMNA--MEX3A:  11%|█         | 3/28 [00:00<00:02,  9.56it/s]
Processing DHX38--AMPD1:  11%|█         | 3/28 [00:00<00:02,  9.56it/s]
Processing DHX38--AMPD1:  14%|█▍        | 4/28 [00:00<00:02,  9.57it/s]
Processing BNC2--AL358117.1:  14%|█▍        | 4/28 [00:00<00:02,  9.57it/s]
Processing BNC2--AL358117.1:  18%|█▊        | 5/28 [00:00<00:02,  9.58it/s]
Processing ZKSCAN7--KIF15:  18%|█▊        | 5/28 [00:00<00:02,  9.58it/s]  
Processing ZKSCAN7--KIF15:  21%|██▏       | 6/28 [00:00<00:02,  9.59it/s]
Processing AC008969.1--SMARCA4:  21%|██▏       | 6/28 [00:00<00:02,  9.59it/s]
Processing AC008969.1--SMARCA4:  25%|██▌       | 7/28 [00:00<00:02,  9.59it/s]
Processing ARHGEF3--RRP9:  25%|██▌       | 7/28 [00:00<00:02,  9.59it/s]      
Processing ARHGEF3--RRP9:  29%|██▊       | 8/28 [00:00<00:02,  9.60it/s]
Processing TLK2--AC240565.1:  29%|██▊       | 8/28 [00:00<00:02,  9.60it/s]
Processing TLK2--AC240565.1:  32%|███▏      | 9/28 [00:00<00:01,  9.60it/s]
Processing GUSBP13--NAIP:  32%|███▏      | 9/28 [00:00<00:01,  9.60it/s]   
Processing GUSBP13--NAIP:  36%|███▌      | 10/28 [00:01<00:01,  9.60it/s]
Processing PCDHGB2--PCDHGA8:  36%|███▌      | 10/28 [00:01<00:01,  9.60it/s]
Processing PCDHGB2--PCDHGA8:  39%|███▉      | 11/28 [00:01<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGB6:  39%|███▉      | 11/28 [00:01<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGB6:  43%|████▎     | 12/28 [00:01<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGC4:  43%|████▎     | 12/28 [00:01<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGC4:  46%|████▋     | 13/28 [00:01<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGC5:  46%|████▋     | 13/28 [00:01<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGC5:  50%|█████     | 14/28 [00:01<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGA11:  50%|█████     | 14/28 [00:01<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGA11:  54%|█████▎    | 15/28 [00:01<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGA10:  54%|█████▎    | 15/28 [00:01<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGA10:  57%|█████▋    | 16/28 [00:01<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGA12:  57%|█████▋    | 16/28 [00:01<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGA12:  61%|██████    | 17/28 [00:01<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGB7:  61%|██████    | 17/28 [00:01<00:01,  9.61it/s] 
Processing PCDHGB2--PCDHGB7:  64%|██████▍   | 18/28 [00:01<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGA9:  64%|██████▍   | 18/28 [00:01<00:01,  9.61it/s]
Processing PCDHGB2--PCDHGA9:  68%|██████▊   | 19/28 [00:01<00:00,  9.60it/s]
Processing PCDHGB2--PCDHGC3:  68%|██████▊   | 19/28 [00:01<00:00,  9.60it/s]
Processing PCDHGB2--PCDHGC3:  71%|███████▏  | 20/28 [00:02<00:00,  9.61it/s]
Processing HIF1A--SNAPC1:  71%|███████▏  | 20/28 [00:02<00:00,  9.61it/s]   
Processing HIF1A--SNAPC1:  75%|███████▌  | 21/28 [00:02<00:00,  9.61it/s]
Processing TRIM33--TRIM33:  75%|███████▌  | 21/28 [00:02<00:00,  9.61it/s]
Processing TRIM33--TRIM33:  79%|███████▊  | 22/28 [00:02<00:00,  9.61it/s]
Processing TMED7--TICAM2:  79%|███████▊  | 22/28 [00:02<00:00,  9.61it/s] 
Processing TMED7--TICAM2:  82%|████████▏ | 23/28 [00:02<00:00,  9.61it/s]
Processing TVP23C--CDRT4:  82%|████████▏ | 23/28 [00:02<00:00,  9.61it/s]
Processing TVP23C--CDRT4:  86%|████████▌ | 24/28 [00:02<00:00,  9.61it/s]
Processing ATAD2B--KLHL29:  86%|████████▌ | 24/28 [00:02<00:00,  9.61it/s]
Processing ATAD2B--KLHL29:  89%|████████▉ | 25/28 [00:02<00:00,  9.61it/s]
Processing CCDC169--SOHLH2:  89%|████████▉ | 25/28 [00:02<00:00,  9.61it/s]
Processing CCDC169--SOHLH2:  93%|█████████▎| 26/28 [00:02<00:00,  9.61it/s]
Processing HMGB3P23--ACO1:  93%|█████████▎| 26/28 [00:02<00:00,  9.61it/s] 
Processing HMGB3P23--ACO1:  96%|█████████▋| 27/28 [00:02<00:00,  9.61it/s]
Processing RNA5SP281--ACO1:  96%|█████████▋| 27/28 [00:02<00:00,  9.61it/s]
Processing RNA5SP281--ACO1: 100%|██████████| 28/28 [00:02<00:00,  9.61it/s]
Processing RNA5SP281--ACO1: 100%|██████████| 28/28 [00:02<00:00,  9.60it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory