-ctat genome lib [/tmp/nxf.xHRN9EeFqO/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.xHRN9EeFqO/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary
-sample contains 295187064 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.xHRN9EeFqO/ctat_genome_lib_build_dir  -J /tmp/nxf.xHRN9EeFqO/KG1_FFPE_01_RNA_0003_B23LG7FLT4_1.Chimeric.out.junction  -O /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.xHRN9EeFqO/KG1_FFPE_01_RNA_0003_B23LG7FLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.xHRN9EeFqO/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.05 min).
-mapping reads to genes

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[2710000], rate=62179.73/min-building interval tree based on /tmp/nxf.xHRN9EeFqO/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[2750000], rate=62146.89/min -building interval tree based on /tmp/nxf.xHRN9EeFqO/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=66666.67/min 
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[2720000], rate=56706.05/min 
[2730000], rate=56658.60/min 
[2740000], rate=56689.66/min -building interval tree based on /tmp/nxf.xHRN9EeFqO/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=85714.29/min 
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[2720000], rate=51580.28/min 
[2730000], rate=51671.92/min 
[2740000], rate=51763.22/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.xHRN9EeFqO/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 0.00 reads per min processed...  
 12000000.00 reads per min processed...  
 18000000.00 reads per min processed...  
 24000000.00 reads per min processed...  
 15000000.00 reads per min processed...  
 9000000.00 reads per min processed...  
 7000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 5400000.00 reads per min processed...  
 5000000.00 reads per min processed...  
 4714285.71 reads per min processed...  
 4800000.00 reads per min processed...  
 4588235.29 reads per min processed...  
 4421052.63 reads per min processed...  
 4285714.29 reads per min processed...  
 4173913.04 reads per min processed...  
 4080000.00 reads per min processed...  
 4000000.00 reads per min processed...  
 3931034.48 reads per min processed...  
 3870967.74 reads per min processed...  
 3937500.00 reads per min processed...  
 3882352.94 reads per min processed...  
 3833333.33 reads per min processed...  
 3789473.68 reads per min processed...  
 3750000.00 reads per min processed...  
 3714285.71 reads per min processed...  
 3681818.18 reads per min processed...  
 3652173.91 reads per min processed...  
 3625000.00 reads per min processed...  
 3600000.00 reads per min processed...  
 3647058.82 reads per min processed...  
 3622641.51 reads per min processed...  
 3600000.00 reads per min processed...  
 3578947.37 reads per min processed...  
 3559322.03 reads per min processed...  
 3540983.61 reads per min processed...  
 3523809.52 reads per min processed...  
 3507692.31 reads per min processed...  
 3492537.31 reads per min processed...  
 3478260.87 reads per min processed...  
 3514285.71 reads per min processed...  
 3500000.00 reads per min processed...  
 3486486.49 reads per min processed...  
 3473684.21 reads per min processed...  
 3461538.46 reads per min processed...  
 3538461.54 reads per min processed...  
 3569620.25 reads per min processed...  
 3600000.00 reads per min processed...  
 3629629.63 reads per min processed...  
 3658536.59 reads per min processed...  
 3686746.99 reads per min processed...  
 3670588.24 reads per min processed...  
 3655172.41 reads per min processed...  
 3640449.44 reads per min processed...  
 3666666.67 reads per min processed...  
 3652173.91 reads per min processed...  
 3638297.87 reads per min processed...  
 3663157.89 reads per min processed...  
 3649484.54 reads per min processed...  
 3673469.39 reads per min processed...  
 3660000.00 reads per min processed...  
 3683168.32 reads per min processed...  
 3669902.91 reads per min processed...  
 3692307.69 reads per min processed...  
 3714285.71 reads per min processed...  
 3700934.58 reads per min processed...  
 3722222.22 reads per min processed...  
 3709090.91 reads per min processed...  
 3729729.73 reads per min processed...  
 3716814.16 reads per min processed...  
 3736842.11 reads per min processed...  
 3724137.93 reads per min processed...  
 3743589.74 reads per min processed...  
 3731092.44 reads per min processed...  
 3750000.00 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.xHRN9EeFqO/KG1_FFPE_01_RNA_0003_B23LG7FLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.xHRN9EeFqO/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -1345560.202952
EM: Round [1] log likelihood: -1345048.899832
EM: Round [2] log likelihood: -1344875.015068
EM: Round [3] log likelihood: -1344794.210534
EM: Round [4] log likelihood: -1344751.486248
EM: Round [5] log likelihood: -1344727.050235
EM: Round [6] log likelihood: -1344712.213735
EM: Round [7] log likelihood: -1344702.731079
EM: Round [8] log likelihood: -1344696.387600
EM: Round [9] log likelihood: -1344691.969731
EM: Round [10] log likelihood: -1344688.782721
EM: Round [11] log likelihood: -1344686.412345
EM: Round [12] log likelihood: -1344684.602203
EM: Round [13] log likelihood: -1344683.188025
EM: Round [14] log likelihood: -1344682.061201
EM: Round [15] log likelihood: -1344681.147812
EM: Round [16] log likelihood: -1344680.396227
EM: Round [17] log likelihood: -1344679.769520
EM: Round [18] log likelihood: -1344679.240732
EM: Round [19] log likelihood: -1344678.789816
EM: Round [20] log likelihood: -1344678.401620
EM: Round [21] log likelihood: -1344678.064524
EM: Round [22] log likelihood: -1344677.769504
EM: Round [23] log likelihood: -1344677.509466
EM: Round [24] log likelihood: -1344677.278775
EM: Round [25] log likelihood: -1344677.072907
EM: Round [26] log likelihood: -1344676.888201
EM: Round [27] log likelihood: -1344676.721666
EM: Round [28] log likelihood: -1344676.570836
EM: Round [29] log likelihood: -1344676.433668
EM: Round [30] log likelihood: -1344676.308451
EM: Round [31] log likelihood: -1344676.193746
EM: Round [32] log likelihood: -1344676.088336
EM: Round [33] log likelihood: -1344675.991180
EM: Round [34] log likelihood: -1344675.901388
EM: Round [35] log likelihood: -1344675.818193
EM: Round [36] log likelihood: -1344675.740929
EM: Round [37] log likelihood: -1344675.669016
EM: Round [38] log likelihood: -1344675.601949
EM: Round [39] log likelihood: -1344675.539282
EM: Round [40] log likelihood: -1344675.480622
EM: Round [41] log likelihood: -1344675.425622
EM: Round [42] log likelihood: -1344675.373974
EM: Round [43] log likelihood: -1344675.325400
EM: Round [44] log likelihood: -1344675.279655
EM: Round [45] log likelihood: -1344675.236518
EM: Round [46] log likelihood: -1344675.195789
EM: Round [47] log likelihood: -1344675.157288
EM: Round [48] log likelihood: -1344675.120853
EM: Round [49] log likelihood: -1344675.086335
EM: Round [50] log likelihood: -1344675.053602
EM: Round [51] log likelihood: -1344675.022530
EM: Round [52] log likelihood: -1344674.993007
EM: Round [53] log likelihood: -1344674.964932
EM: Round [54] log likelihood: -1344674.938210
EM: Round [55] log likelihood: -1344674.912755
EM: Round [56] log likelihood: -1344674.888489
EM: Round [57] log likelihood: -1344674.865337
EM: Round [58] log likelihood: -1344674.843233
EM: Round [59] log likelihood: -1344674.822113
EM: Round [60] log likelihood: -1344674.801921
EM: Round [61] log likelihood: -1344674.782603
EM: Round [62] log likelihood: -1344674.764108
EM: Round [63] log likelihood: -1344674.746391
EM: Round [64] log likelihood: -1344674.729409
EM: Round [65] log likelihood: -1344674.713121
EM: Round [66] log likelihood: -1344674.697491
EM: Round [67] log likelihood: -1344674.682482
EM: Round [68] log likelihood: -1344674.668063
EM: Round [69] log likelihood: -1344674.654203
EM: Round [70] log likelihood: -1344674.640874
EM: Round [71] log likelihood: -1344674.628047
EM: Round [72] log likelihood: -1344674.615700
EM: Round [73] log likelihood: -1344674.603807
EM: Round [74] log likelihood: -1344674.592346
EM: Round [75] log likelihood: -1344674.581297
EM: Round [76] log likelihood: -1344674.570640
EM: Round [77] log likelihood: -1344674.560357
EM: Round [78] log likelihood: -1344674.550429
EM: Round [79] log likelihood: -1344674.540841
EM: Round [80] log likelihood: -1344674.531577
EM: Round [81] log likelihood: -1344674.522622
EM: Round [82] log likelihood: -1344674.513963
EM: Round [83] log likelihood: -1344674.505586
EM: Round [84] log likelihood: -1344674.497479
EM: Round [85] log likelihood: -1344674.489631
EM: Round [86] log likelihood: -1344674.482029
EM: Round [87] log likelihood: -1344674.474664
EM: Round [88] log likelihood: -1344674.467526
EM: Round [89] log likelihood: -1344674.460605
EM: Round [90] log likelihood: -1344674.453892
EM: Round [91] log likelihood: -1344674.447379
EM: Round [92] log likelihood: -1344674.441057
EM: Round [93] log likelihood: -1344674.434919
EM: Round [94] log likelihood: -1344674.428958
EM: Round [95] log likelihood: -1344674.423166
EM: Round [96] log likelihood: -1344674.417537
EM: Round [97] log likelihood: -1344674.412065
EM: Round [98] log likelihood: -1344674.406744
EM: Round [99] log likelihood: -1344674.401567
EM: Round [100] log likelihood: -1344674.396530
EM: Round [101] log likelihood: -1344674.391628
EM: Round [102] log likelihood: -1344674.386854
EM: Round [103] log likelihood: -1344674.382206
EM: Round [104] log likelihood: -1344674.377677
EM: Round [105] log likelihood: -1344674.373265
EM: Round [106] log likelihood: -1344674.368964
EM: Round [107] log likelihood: -1344674.364771
EM: Round [108] log likelihood: -1344674.360682
EM: Round [109] log likelihood: -1344674.356694
EM: Round [110] log likelihood: -1344674.352802
EM: Round [111] log likelihood: -1344674.349004
EM: Round [112] log likelihood: -1344674.345297
EM: Round [113] log likelihood: -1344674.341678
EM: Round [114] log likelihood: -1344674.338143
EM: Round [115] log likelihood: -1344674.334690
EM: Round [116] log likelihood: -1344674.331317
EM: Round [117] log likelihood: -1344674.328020
EM: Round [118] log likelihood: -1344674.324798
EM: Round [119] log likelihood: -1344674.321648
EM: Round [120] log likelihood: -1344674.318567
EM: Round [121] log likelihood: -1344674.315554
EM: Round [122] log likelihood: -1344674.312607
EM: Round [123] log likelihood: -1344674.309723
EM: Round [124] log likelihood: -1344674.306901
EM: Round [125] log likelihood: -1344674.304139
EM: Round [126] log likelihood: -1344674.301435
EM: Round [127] log likelihood: -1344674.298787
EM: Round [128] log likelihood: -1344674.296195
EM: Round [129] log likelihood: -1344674.293655
EM: Round [130] log likelihood: -1344674.291167
EM: Round [131] log likelihood: -1344674.288729
EM: Round [132] log likelihood: -1344674.286341
EM: Round [133] log likelihood: -1344674.283999
EM: Round [134] log likelihood: -1344674.281704
EM: Round [135] log likelihood: -1344674.279454
EM: Round [136] log likelihood: -1344674.277248
EM: Round [137] log likelihood: -1344674.275084
EM: Round [138] log likelihood: -1344674.272962
EM: Round [139] log likelihood: -1344674.270880
EM: Round [140] log likelihood: -1344674.268837
EM: Round [141] log likelihood: -1344674.266833
EM: Round [142] log likelihood: -1344674.264866
EM: Round [143] log likelihood: -1344674.262936
EM: Round [144] log likelihood: -1344674.261041
EM: Round [145] log likelihood: -1344674.259180
EM: Round [146] log likelihood: -1344674.257354
EM: Round [147] log likelihood: -1344674.255560
EM: Round [148] log likelihood: -1344674.253799
EM: Round [149] log likelihood: -1344674.252069
EM: Round [150] log likelihood: -1344674.250370
EM: Round [151] log likelihood: -1344674.248700
EM: Round [152] log likelihood: -1344674.247060
EM: Round [153] log likelihood: -1344674.245448
EM: Round [154] log likelihood: -1344674.243864
EM: Round [155] log likelihood: -1344674.242308
EM: Round [156] log likelihood: -1344674.240778
EM: Round [157] log likelihood: -1344674.239274
EM: Round [158] log likelihood: -1344674.237796
EM: Round [159] log likelihood: -1344674.236342
EM: Round [160] log likelihood: -1344674.234913
EM: Round [161] log likelihood: -1344674.233507
EM: Round [162] log likelihood: -1344674.232125
EM: Round [163] log likelihood: -1344674.230766
EM: Round [164] log likelihood: -1344674.229429
EM: Round [165] log likelihood: -1344674.228114
EM: Round [166] log likelihood: -1344674.226820
EM: Round [167] log likelihood: -1344674.225547
EM: Round [168] log likelihood: -1344674.224295
EM: Round [169] log likelihood: -1344674.223062
EM: Round [170] log likelihood: -1344674.221850
EM: Round [171] log likelihood: -1344674.220656
EM: Round [172] log likelihood: -1344674.219482
EM: Round [173] log likelihood: -1344674.218326
EM: Round [174] log likelihood: -1344674.217188
EM: Round [175] log likelihood: -1344674.216068
EM: Round [176] log likelihood: -1344674.214965
EM: Round [177] log likelihood: -1344674.213880
EM: Round [178] log likelihood: -1344674.212811
EM: Round [179] log likelihood: -1344674.211758
EM: Round [180] log likelihood: -1344674.210722
EM: Round [181] log likelihood: -1344674.209701
EM: Round [182] log likelihood: -1344674.208696
EM: Round [183] log likelihood: -1344674.207707
EM: Round [184] log likelihood: -1344674.206732
EM: Round [185] log likelihood: -1344674.205772
EM: Round [186] log likelihood: -1344674.204826
EM: Round [187] log likelihood: -1344674.203894
EM: Round [188] log likelihood: -1344674.202976
EM: Round [189] log likelihood: -1344674.202072
EM: Round [190] log likelihood: -1344674.201181
EM: Round [191] log likelihood: -1344674.200303
EM: Round [192] log likelihood: -1344674.199438
EM: Round [193] log likelihood: -1344674.198586
EM: Round [194] log likelihood: -1344674.197746
EM: Round [195] log likelihood: -1344674.196918
EM: Round [196] log likelihood: -1344674.196103
EM: Round [197] log likelihood: -1344674.195299
EM: Round [198] log likelihood: -1344674.194507
EM: Round [199] log likelihood: -1344674.193726
EM: Round [200] log likelihood: -1344674.192956
EM: Round [201] log likelihood: -1344674.192197
EM: Round [202] log likelihood: -1344674.191449
EM: Round [203] log likelihood: -1344674.190712
EM: Round [204] log likelihood: -1344674.189985
EM: Round [205] log likelihood: -1344674.189269
EM: Round [206] log likelihood: -1344674.188562
EM: Round [207] log likelihood: -1344674.187865
EM: Round [208] log likelihood: -1344674.187179
EM: Round [209] log likelihood: -1344674.186501
EM: Round [210] log likelihood: -1344674.185834
EM: Round [211] log likelihood: -1344674.185175
EM: Round [212] log likelihood: -1344674.184526
EM: Round [213] log likelihood: -1344674.183885
EM: Round [214] log likelihood: -1344674.183254
EM: Round [215] log likelihood: -1344674.182631
EM: Round [216] log likelihood: -1344674.182017
EM: Round [217] log likelihood: -1344674.181411
EM: Round [218] log likelihood: -1344674.180813
EM: Round [219] log likelihood: -1344674.180224
EM: Round [220] log likelihood: -1344674.179642
EM: Round [221] log likelihood: -1344674.179069
EM: Round [222] log likelihood: -1344674.178503
EM: Round [223] log likelihood: -1344674.177945
EM: Round [224] log likelihood: -1344674.177394
EM: Round [225] log likelihood: -1344674.176851
EM: Round [226] log likelihood: -1344674.176315
EM: Round [227] log likelihood: -1344674.175787
EM: Round [228] log likelihood: -1344674.175265
EM: Round [229] log likelihood: -1344674.174750
EM: Round [230] log likelihood: -1344674.174243
EM: Round [231] log likelihood: -1344674.173742
EM: Round [232] log likelihood: -1344674.173247
EM: Round [233] log likelihood: -1344674.172760
EM: Round [234] log likelihood: -1344674.172278
EM: Round [235] log likelihood: -1344674.171803
EM: Round [236] log likelihood: -1344674.171334
EM: Round [237] log likelihood: -1344674.170872
EM: Round [238] log likelihood: -1344674.170415
EM: Round [239] log likelihood: -1344674.169965
EM: Round [240] log likelihood: -1344674.169520
EM: Round [241] log likelihood: -1344674.169081
EM: Round [242] log likelihood: -1344674.168648
EM: Round [243] log likelihood: -1344674.168221
EM: Round [244] log likelihood: -1344674.167799
EM: Round [245] log likelihood: -1344674.167383
EM: Round [246] log likelihood: -1344674.166972
EM: Round [247] log likelihood: -1344674.166566
EM: Round [248] log likelihood: -1344674.166165
EM: Round [249] log likelihood: -1344674.165770
EM: Round [250] log likelihood: -1344674.165380
EM: Round [251] log likelihood: -1344674.164995
EM: Round [252] log likelihood: -1344674.164614
EM: Round [253] log likelihood: -1344674.164239
EM: Round [254] log likelihood: -1344674.163868
EM: Round [255] log likelihood: -1344674.163502
EM: Round [256] log likelihood: -1344674.163141
EM: Round [257] log likelihood: -1344674.162785
EM: Round [258] log likelihood: -1344674.162433
EM: Round [259] log likelihood: -1344674.162085
EM: Round [260] log likelihood: -1344674.161742
EM: Round [261] log likelihood: -1344674.161403
EM: Round [262] log likelihood: -1344674.161068
EM: Round [263] log likelihood: -1344674.160738
EM: Round [264] log likelihood: -1344674.160412
EM: Round [265] log likelihood: -1344674.160090
EM: Round [266] log likelihood: -1344674.159772
EM: Round [267] log likelihood: -1344674.159458
EM: Round [268] log likelihood: -1344674.159148
EM: Round [269] log likelihood: -1344674.158841
EM: Round [270] log likelihood: -1344674.158539
EM: Round [271] log likelihood: -1344674.158240
EM: Round [272] log likelihood: -1344674.157946
EM: Round [273] log likelihood: -1344674.157654
EM: Round [274] log likelihood: -1344674.157367
EM: Round [275] log likelihood: -1344674.157083
EM: Round [276] log likelihood: -1344674.156802
EM: Round [277] log likelihood: -1344674.156525
EM: Round [278] log likelihood: -1344674.156252
EM: Round [279] log likelihood: -1344674.155982
EM: Round [280] log likelihood: -1344674.155715
EM: Round [281] log likelihood: -1344674.155451
EM: Round [282] log likelihood: -1344674.155191
EM: Round [283] log likelihood: -1344674.154934
EM: Round [284] log likelihood: -1344674.154680
EM: Round [285] log likelihood: -1344674.154429
EM: Round [286] log likelihood: -1344674.154181
EM: Round [287] log likelihood: -1344674.153937
EM: Round [288] log likelihood: -1344674.153695
EM: Round [289] log likelihood: -1344674.153456
EM: Round [290] log likelihood: -1344674.153220
EM: Round [291] log likelihood: -1344674.152987
EM: Round [292] log likelihood: -1344674.152757
EM: Round [293] log likelihood: -1344674.152530
EM: Round [294] log likelihood: -1344674.152305
EM: Round [295] log likelihood: -1344674.152084
EM: Round [296] log likelihood: -1344674.151864
EM: Round [297] log likelihood: -1344674.151648
EM: Round [298] log likelihood: -1344674.151434
EM: Round [299] log likelihood: -1344674.151223
EM: Round [300] log likelihood: -1344674.151014
EM: Round [301] log likelihood: -1344674.150808
EM: Round [302] log likelihood: -1344674.150604
EM: Round [303] log likelihood: -1344674.150403
EM: Round [304] log likelihood: -1344674.150204
EM: Round [305] log likelihood: -1344674.150008
EM: Round [306] log likelihood: -1344674.149814
EM: Round [307] log likelihood: -1344674.149622
EM: Round [308] log likelihood: -1344674.149433
EM: Round [309] log likelihood: -1344674.149246
EM: Round [310] log likelihood: -1344674.149061
EM: Round [311] log likelihood: -1344674.148878
EM: Round [312] log likelihood: -1344674.148697
EM: Round [313] log likelihood: -1344674.148519
EM: Round [314] log likelihood: -1344674.148343
EM: Round [315] log likelihood: -1344674.148169
EM: Round [316] log likelihood: -1344674.147997
EM: Round [317] log likelihood: -1344674.147827
EM: Round [318] log likelihood: -1344674.147659
EM: Round [319] log likelihood: -1344674.147493
EM: Round [320] log likelihood: -1344674.147329
EM: Round [321] log likelihood: -1344674.147167
EM: Round [322] log likelihood: -1344674.147007
EM: Round [323] log likelihood: -1344674.146848
EM: Round [324] log likelihood: -1344674.146692
EM: Round [325] log likelihood: -1344674.146538
EM: Round [326] log likelihood: -1344674.146385
EM: Round [327] log likelihood: -1344674.146234
EM: Round [328] log likelihood: -1344674.146085
EM: Round [329] log likelihood: -1344674.145938
EM: Round [330] log likelihood: -1344674.145792
EM: Round [331] log likelihood: -1344674.145648
EM: Round [332] log likelihood: -1344674.145506
EM: Round [333] log likelihood: -1344674.145365
EM: Round [334] log likelihood: -1344674.145227
EM: Round [335] log likelihood: -1344674.145089
EM: Round [336] log likelihood: -1344674.144954
EM: Round [337] log likelihood: -1344674.144820
EM: Round [338] log likelihood: -1344674.144687
EM: Round [339] log likelihood: -1344674.144556
EM: Round [340] log likelihood: -1344674.144427
EM: Round [341] log likelihood: -1344674.144299
EM: Round [342] log likelihood: -1344674.144173
EM: Round [343] log likelihood: -1344674.144048
EM: Round [344] log likelihood: -1344674.143925
EM: Round [345] log likelihood: -1344674.143803
EM: Round [346] log likelihood: -1344674.143682
EM: Round [347] log likelihood: -1344674.143563
EM: Round [348] log likelihood: -1344674.143445
EM: Round [349] log likelihood: -1344674.143329
EM: Round [350] log likelihood: -1344674.143214
EM: Round [351] log likelihood: -1344674.143100
EM: Round [352] log likelihood: -1344674.142988
EM: Round [353] log likelihood: -1344674.142876
EM: Round [354] log likelihood: -1344674.142767
EM: Round [355] log likelihood: -1344674.142658
EM: Round [356] log likelihood: -1344674.142551
EM: Round [357] log likelihood: -1344674.142445
EM: Round [358] log likelihood: -1344674.142340
EM: Round [359] log likelihood: -1344674.142236
EM: Round [360] log likelihood: -1344674.142134
EM: Round [361] log likelihood: -1344674.142033
EM: Round [362] log likelihood: -1344674.141933
EM: Round [363] log likelihood: -1344674.141834
EM: Stopping iterations at round 363 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -1343866.871087
EM: Round [1] log likelihood: -1343481.198263
EM: Round [2] log likelihood: -1343345.430386
EM: Round [3] log likelihood: -1343282.569052
EM: Round [4] log likelihood: -1343249.650500
EM: Round [5] log likelihood: -1343231.013487
EM: Round [6] log likelihood: -1343219.799866
EM: Round [7] log likelihood: -1343212.690513
EM: Round [8] log likelihood: -1343207.970522
EM: Round [9] log likelihood: -1343204.706813
EM: Round [10] log likelihood: -1343202.367954
EM: Round [11] log likelihood: -1343200.638504
EM: Round [12] log likelihood: -1343199.324135
EM: Round [13] log likelihood: -1343198.301041
EM: Round [14] log likelihood: -1343197.487885
EM: Round [15] log likelihood: -1343196.829700
EM: Round [16] log likelihood: -1343196.288363
EM: Round [17] log likelihood: -1343195.836802
EM: Round [18] log likelihood: -1343195.455382
EM: Round [19] log likelihood: -1343195.129588
EM: Round [20] log likelihood: -1343194.848509
EM: Round [21] log likelihood: -1343194.603821
EM: Round [22] log likelihood: -1343194.389083
EM: Round [23] log likelihood: -1343194.199251
EM: Round [24] log likelihood: -1343194.030332
EM: Round [25] log likelihood: -1343193.879129
EM: Round [26] log likelihood: -1343193.743059
EM: Round [27] log likelihood: -1343193.620014
EM: Round [28] log likelihood: -1343193.508260
EM: Round [29] log likelihood: -1343193.406360
EM: Round [30] log likelihood: -1343193.313109
EM: Round [31] log likelihood: -1343193.227497
EM: Round [32] log likelihood: -1343193.148662
EM: Round [33] log likelihood: -1343193.075874
EM: Round [34] log likelihood: -1343193.008500
EM: Round [35] log likelihood: -1343192.945998
EM: Round [36] log likelihood: -1343192.887893
EM: Round [37] log likelihood: -1343192.833774
EM: Round [38] log likelihood: -1343192.783276
EM: Round [39] log likelihood: -1343192.736079
EM: Round [40] log likelihood: -1343192.691902
EM: Round [41] log likelihood: -1343192.650491
EM: Round [42] log likelihood: -1343192.611622
EM: Round [43] log likelihood: -1343192.575093
EM: Round [44] log likelihood: -1343192.540722
EM: Round [45] log likelihood: -1343192.508347
EM: Round [46] log likelihood: -1343192.477820
EM: Round [47] log likelihood: -1343192.449007
EM: Round [48] log likelihood: -1343192.421785
EM: Round [49] log likelihood: -1343192.396044
EM: Round [50] log likelihood: -1343192.371682
EM: Round [51] log likelihood: -1343192.348607
EM: Round [52] log likelihood: -1343192.326732
EM: Round [53] log likelihood: -1343192.305981
EM: Round [54] log likelihood: -1343192.286280
EM: Round [55] log likelihood: -1343192.267564
EM: Round [56] log likelihood: -1343192.249770
EM: Round [57] log likelihood: -1343192.232843
EM: Round [58] log likelihood: -1343192.216729
EM: Round [59] log likelihood: -1343192.201379
EM: Round [60] log likelihood: -1343192.186749
EM: Round [61] log likelihood: -1343192.172797
EM: Round [62] log likelihood: -1343192.159482
EM: Round [63] log likelihood: -1343192.146769
EM: Round [64] log likelihood: -1343192.134623
EM: Round [65] log likelihood: -1343192.123013
EM: Round [66] log likelihood: -1343192.111909
EM: Round [67] log likelihood: -1343192.101283
EM: Round [68] log likelihood: -1343192.091109
EM: Round [69] log likelihood: -1343192.081363
EM: Round [70] log likelihood: -1343192.072022
EM: Round [71] log likelihood: -1343192.063064
EM: Round [72] log likelihood: -1343192.054470
EM: Round [73] log likelihood: -1343192.046220
EM: Round [74] log likelihood: -1343192.038297
EM: Round [75] log likelihood: -1343192.030685
EM: Round [76] log likelihood: -1343192.023366
EM: Round [77] log likelihood: -1343192.016328
EM: Round [78] log likelihood: -1343192.009555
EM: Round [79] log likelihood: -1343192.003035
EM: Round [80] log likelihood: -1343191.996755
EM: Round [81] log likelihood: -1343191.990704
EM: Round [82] log likelihood: -1343191.984870
EM: Round [83] log likelihood: -1343191.979244
EM: Round [84] log likelihood: -1343191.973815
EM: Round [85] log likelihood: -1343191.968575
EM: Round [86] log likelihood: -1343191.963513
EM: Round [87] log likelihood: -1343191.958623
EM: Round [88] log likelihood: -1343191.953896
EM: Round [89] log likelihood: -1343191.949325
EM: Round [90] log likelihood: -1343191.944903
EM: Round [91] log likelihood: -1343191.940623
EM: Round [92] log likelihood: -1343191.936479
EM: Round [93] log likelihood: -1343191.932465
EM: Round [94] log likelihood: -1343191.928575
EM: Round [95] log likelihood: -1343191.924804
EM: Round [96] log likelihood: -1343191.921147
EM: Round [97] log likelihood: -1343191.917598
EM: Round [98] log likelihood: -1343191.914155
EM: Round [99] log likelihood: -1343191.910811
EM: Round [100] log likelihood: -1343191.907563
EM: Round [101] log likelihood: -1343191.904407
EM: Round [102] log likelihood: -1343191.901339
EM: Round [103] log likelihood: -1343191.898356
EM: Round [104] log likelihood: -1343191.895454
EM: Round [105] log likelihood: -1343191.892631
EM: Round [106] log likelihood: -1343191.889882
EM: Round [107] log likelihood: -1343191.887206
EM: Round [108] log likelihood: -1343191.884599
EM: Round [109] log likelihood: -1343191.882058
EM: Round [110] log likelihood: -1343191.879582
EM: Round [111] log likelihood: -1343191.877167
EM: Round [112] log likelihood: -1343191.874812
EM: Round [113] log likelihood: -1343191.872515
EM: Round [114] log likelihood: -1343191.870272
EM: Round [115] log likelihood: -1343191.868083
EM: Round [116] log likelihood: -1343191.865945
EM: Round [117] log likelihood: -1343191.863857
EM: Round [118] log likelihood: -1343191.861817
EM: Round [119] log likelihood: -1343191.859823
EM: Round [120] log likelihood: -1343191.857873
EM: Round [121] log likelihood: -1343191.855967
EM: Round [122] log likelihood: -1343191.854102
EM: Round [123] log likelihood: -1343191.852277
EM: Round [124] log likelihood: -1343191.850492
EM: Round [125] log likelihood: -1343191.848744
EM: Round [126] log likelihood: -1343191.847033
EM: Round [127] log likelihood: -1343191.845357
EM: Round [128] log likelihood: -1343191.843715
EM: Round [129] log likelihood: -1343191.842107
EM: Round [130] log likelihood: -1343191.840530
EM: Round [131] log likelihood: -1343191.838985
EM: Round [132] log likelihood: -1343191.837470
EM: Round [133] log likelihood: -1343191.835985
EM: Round [134] log likelihood: -1343191.834528
EM: Round [135] log likelihood: -1343191.833098
EM: Round [136] log likelihood: -1343191.831696
EM: Round [137] log likelihood: -1343191.830319
EM: Round [138] log likelihood: -1343191.828968
EM: Round [139] log likelihood: -1343191.827642
EM: Round [140] log likelihood: -1343191.826340
EM: Round [141] log likelihood: -1343191.825061
EM: Round [142] log likelihood: -1343191.823805
EM: Round [143] log likelihood: -1343191.822571
EM: Round [144] log likelihood: -1343191.821358
EM: Round [145] log likelihood: -1343191.820167
EM: Round [146] log likelihood: -1343191.818996
EM: Round [147] log likelihood: -1343191.817845
EM: Round [148] log likelihood: -1343191.816713
EM: Round [149] log likelihood: -1343191.815600
EM: Round [150] log likelihood: -1343191.814506
EM: Round [151] log likelihood: -1343191.813430
EM: Round [152] log likelihood: -1343191.812371
EM: Round [153] log likelihood: -1343191.811330
EM: Round [154] log likelihood: -1343191.810305
EM: Round [155] log likelihood: -1343191.809297
EM: Round [156] log likelihood: -1343191.808305
EM: Round [157] log likelihood: -1343191.807328
EM: Round [158] log likelihood: -1343191.806367
EM: Round [159] log likelihood: -1343191.805421
EM: Round [160] log likelihood: -1343191.804489
EM: Round [161] log likelihood: -1343191.803572
EM: Round [162] log likelihood: -1343191.802669
EM: Round [163] log likelihood: -1343191.801780
EM: Round [164] log likelihood: -1343191.800903
EM: Round [165] log likelihood: -1343191.800041
EM: Round [166] log likelihood: -1343191.799190
EM: Round [167] log likelihood: -1343191.798353
EM: Round [168] log likelihood: -1343191.797528
EM: Round [169] log likelihood: -1343191.796715
EM: Round [170] log likelihood: -1343191.795914
EM: Round [171] log likelihood: -1343191.795125
EM: Round [172] log likelihood: -1343191.794346
EM: Round [173] log likelihood: -1343191.793580
EM: Round [174] log likelihood: -1343191.792824
EM: Round [175] log likelihood: -1343191.792079
EM: Round [176] log likelihood: -1343191.791344
EM: Round [177] log likelihood: -1343191.790620
EM: Round [178] log likelihood: -1343191.789906
EM: Round [179] log likelihood: -1343191.789202
EM: Round [180] log likelihood: -1343191.788508
EM: Round [181] log likelihood: -1343191.787823
EM: Round [182] log likelihood: -1343191.787148
EM: Round [183] log likelihood: -1343191.786482
EM: Round [184] log likelihood: -1343191.785826
EM: Round [185] log likelihood: -1343191.785178
EM: Round [186] log likelihood: -1343191.784539
EM: Round [187] log likelihood: -1343191.783909
EM: Round [188] log likelihood: -1343191.783287
EM: Round [189] log likelihood: -1343191.782674
EM: Round [190] log likelihood: -1343191.782069
EM: Round [191] log likelihood: -1343191.781472
EM: Round [192] log likelihood: -1343191.780883
EM: Round [193] log likelihood: -1343191.780302
EM: Round [194] log likelihood: -1343191.779729
EM: Round [195] log likelihood: -1343191.779163
EM: Round [196] log likelihood: -1343191.778604
EM: Round [197] log likelihood: -1343191.778053
EM: Round [198] log likelihood: -1343191.777510
EM: Round [199] log likelihood: -1343191.776973
EM: Round [200] log likelihood: -1343191.776443
EM: Round [201] log likelihood: -1343191.775920
EM: Round [202] log likelihood: -1343191.775404
EM: Round [203] log likelihood: -1343191.774895
EM: Round [204] log likelihood: -1343191.774392
EM: Round [205] log likelihood: -1343191.773896
EM: Round [206] log likelihood: -1343191.773406
EM: Round [207] log likelihood: -1343191.772922
EM: Round [208] log likelihood: -1343191.772445
EM: Round [209] log likelihood: -1343191.771974
EM: Round [210] log likelihood: -1343191.771508
EM: Round [211] log likelihood: -1343191.771049
EM: Round [212] log likelihood: -1343191.770595
EM: Round [213] log likelihood: -1343191.770148
EM: Round [214] log likelihood: -1343191.769706
EM: Round [215] log likelihood: -1343191.769269
EM: Round [216] log likelihood: -1343191.768838
EM: Round [217] log likelihood: -1343191.768412
EM: Round [218] log likelihood: -1343191.767992
EM: Round [219] log likelihood: -1343191.767577
EM: Round [220] log likelihood: -1343191.767167
EM: Round [221] log likelihood: -1343191.766763
EM: Round [222] log likelihood: -1343191.766363
EM: Round [223] log likelihood: -1343191.765968
EM: Round [224] log likelihood: -1343191.765579
EM: Round [225] log likelihood: -1343191.765194
EM: Round [226] log likelihood: -1343191.764814
EM: Round [227] log likelihood: -1343191.764438
EM: Round [228] log likelihood: -1343191.764068
EM: Round [229] log likelihood: -1343191.763702
EM: Round [230] log likelihood: -1343191.763340
EM: Round [231] log likelihood: -1343191.762983
EM: Round [232] log likelihood: -1343191.762630
EM: Round [233] log likelihood: -1343191.762282
EM: Round [234] log likelihood: -1343191.761937
EM: Round [235] log likelihood: -1343191.761598
EM: Round [236] log likelihood: -1343191.761262
EM: Round [237] log likelihood: -1343191.760930
EM: Round [238] log likelihood: -1343191.760603
EM: Round [239] log likelihood: -1343191.760279
EM: Round [240] log likelihood: -1343191.759959
EM: Round [241] log likelihood: -1343191.759644
EM: Round [242] log likelihood: -1343191.759332
EM: Round [243] log likelihood: -1343191.759024
EM: Round [244] log likelihood: -1343191.758720
EM: Round [245] log likelihood: -1343191.758419
EM: Round [246] log likelihood: -1343191.758122
EM: Round [247] log likelihood: -1343191.757829
EM: Round [248] log likelihood: -1343191.757539
EM: Round [249] log likelihood: -1343191.757253
EM: Round [250] log likelihood: -1343191.756970
EM: Round [251] log likelihood: -1343191.756690
EM: Round [252] log likelihood: -1343191.756414
EM: Round [253] log likelihood: -1343191.756142
EM: Round [254] log likelihood: -1343191.755872
EM: Round [255] log likelihood: -1343191.755606
EM: Round [256] log likelihood: -1343191.755343
EM: Round [257] log likelihood: -1343191.755084
EM: Round [258] log likelihood: -1343191.754827
EM: Round [259] log likelihood: -1343191.754573
EM: Round [260] log likelihood: -1343191.754323
EM: Round [261] log likelihood: -1343191.754075
EM: Round [262] log likelihood: -1343191.753831
EM: Round [263] log likelihood: -1343191.753589
EM: Round [264] log likelihood: -1343191.753351
EM: Round [265] log likelihood: -1343191.753115
EM: Round [266] log likelihood: -1343191.752882
EM: Round [267] log likelihood: -1343191.752652
EM: Round [268] log likelihood: -1343191.752424
EM: Round [269] log likelihood: -1343191.752200
EM: Round [270] log likelihood: -1343191.751978
EM: Round [271] log likelihood: -1343191.751758
EM: Round [272] log likelihood: -1343191.751541
EM: Round [273] log likelihood: -1343191.751327
EM: Round [274] log likelihood: -1343191.751116
EM: Round [275] log likelihood: -1343191.750907
EM: Round [276] log likelihood: -1343191.750700
EM: Round [277] log likelihood: -1343191.750496
EM: Round [278] log likelihood: -1343191.750294
EM: Round [279] log likelihood: -1343191.750095
EM: Round [280] log likelihood: -1343191.749898
EM: Round [281] log likelihood: -1343191.749703
EM: Round [282] log likelihood: -1343191.749511
EM: Round [283] log likelihood: -1343191.749321
EM: Round [284] log likelihood: -1343191.749133
EM: Round [285] log likelihood: -1343191.748948
EM: Round [286] log likelihood: -1343191.748765
EM: Round [287] log likelihood: -1343191.748584
EM: Round [288] log likelihood: -1343191.748405
EM: Round [289] log likelihood: -1343191.748228
EM: Round [290] log likelihood: -1343191.748053
EM: Round [291] log likelihood: -1343191.747880
EM: Round [292] log likelihood: -1343191.747710
EM: Round [293] log likelihood: -1343191.747541
EM: Round [294] log likelihood: -1343191.747375
EM: Round [295] log likelihood: -1343191.747210
EM: Round [296] log likelihood: -1343191.747047
EM: Round [297] log likelihood: -1343191.746887
EM: Round [298] log likelihood: -1343191.746728
EM: Round [299] log likelihood: -1343191.746571
EM: Round [300] log likelihood: -1343191.746416
EM: Round [301] log likelihood: -1343191.746262
EM: Round [302] log likelihood: -1343191.746111
EM: Round [303] log likelihood: -1343191.745961
EM: Round [304] log likelihood: -1343191.745813
EM: Round [305] log likelihood: -1343191.745667
EM: Round [306] log likelihood: -1343191.745523
EM: Round [307] log likelihood: -1343191.745380
EM: Round [308] log likelihood: -1343191.745239
EM: Round [309] log likelihood: -1343191.745100
EM: Round [310] log likelihood: -1343191.744962
EM: Round [311] log likelihood: -1343191.744826
EM: Round [312] log likelihood: -1343191.744691
EM: Round [313] log likelihood: -1343191.744558
EM: Round [314] log likelihood: -1343191.744427
EM: Round [315] log likelihood: -1343191.744297
EM: Round [316] log likelihood: -1343191.744169
EM: Round [317] log likelihood: -1343191.744042
EM: Round [318] log likelihood: -1343191.743917
EM: Round [319] log likelihood: -1343191.743793
EM: Round [320] log likelihood: -1343191.743671
EM: Round [321] log likelihood: -1343191.743550
EM: Round [322] log likelihood: -1343191.743430
EM: Round [323] log likelihood: -1343191.743312
EM: Round [324] log likelihood: -1343191.743196
EM: Round [325] log likelihood: -1343191.743080
EM: Round [326] log likelihood: -1343191.742966
EM: Round [327] log likelihood: -1343191.742854
EM: Round [328] log likelihood: -1343191.742742
EM: Round [329] log likelihood: -1343191.742632
EM: Round [330] log likelihood: -1343191.742524
EM: Round [331] log likelihood: -1343191.742416
EM: Round [332] log likelihood: -1343191.742310
EM: Round [333] log likelihood: -1343191.742205
EM: Round [334] log likelihood: -1343191.742102
EM: Round [335] log likelihood: -1343191.741999
EM: Round [336] log likelihood: -1343191.741898
EM: Round [337] log likelihood: -1343191.741798
EM: Round [338] log likelihood: -1343191.741699
EM: Stopping iterations at round 338 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.xHRN9EeFqO/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.xHRN9EeFqO/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.xHRN9EeFqO/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 295187064 > /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.xHRN9EeFqO/ctat_genome_lib_build_dir > /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.xHRN9EeFqO/ctat_genome_lib_build_dir --annotate /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.xHRN9EeFqO/ctat_genome_lib_build_dir
-done, see /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.xHRN9EeFqO/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 1654, filtered: 7864)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.xHRN9EeFqO/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.xHRN9EeFqO/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000245958.6]
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WARNING, no entry stored in dbm for [ENSG00000236670.1]
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WARNING, no entry stored in dbm for [ENSG00000226942.2]
WARNING, no entry stored in dbm for [ENSG00000251297.1]
WARNING, no entry stored in dbm for [ENSG00000283491.1]
WARNING, no entry stored in dbm for [ENSG00000235112.1]
WARNING, no entry stored in dbm for [ENSG00000258153.1]
WARNING, no entry stored in dbm for [ENSG00000250356.1]
WARNING, no entry stored in dbm for [ENSG00000258153.1]
WARNING, no entry stored in dbm for [ENSG00000237306.1]
WARNING, no entry stored in dbm for [ENSG00000258153.1]
WARNING, no entry stored in dbm for [ENSG00000235930.3]
WARNING, no entry stored in dbm for [ENSG00000258153.1]
WARNING, no entry stored in dbm for [ENSG00000229334.1]
WARNING, no entry stored in dbm for [ENSG00000239920.2]
WARNING, no entry stored in dbm for [ENSG00000253187.2]
WARNING, no entry stored in dbm for [ENSG00000213300.5]
WARNING, no entry stored in dbm for [ENSG00000248977.1]
WARNING, no entry stored in dbm for [ENSG00000214223.4]
WARNING, no entry stored in dbm for [ENSG00000213707.2]
WARNING, no entry stored in dbm for [ENSG00000197301.7]
WARNING, no entry stored in dbm for [ENSG00000230267.7]
WARNING, no entry stored in dbm for [ENSG00000241057.2]
WARNING, no entry stored in dbm for [ENSG00000235655.3]
WARNING, no entry stored in dbm for [ENSG00000258741.4]
WARNING, no entry stored in dbm for [ENSG00000183666.17]
WARNING, no entry stored in dbm for [ENSG00000183666.17]
WARNING, no entry stored in dbm for [ENSG00000183666.17]
WARNING, no entry stored in dbm for [ENSG00000272800.3]
WARNING, no entry stored in dbm for [ENSG00000272645.3]
WARNING, no entry stored in dbm for [ENSG00000189136.9]
WARNING, no entry stored in dbm for [ENSG00000241621.1]
WARNING, no entry stored in dbm for [ENSG00000250903.9]
WARNING, no entry stored in dbm for [ENSG00000286021.2]
WARNING, no entry stored in dbm for [ENSG00000160766.14]
WARNING, no entry stored in dbm for [ENSG00000234741.8]
WARNING, no entry stored in dbm for [ENSG00000169075.7]
WARNING, no entry stored in dbm for [ENSG00000224858.5]
WARNING, no entry stored in dbm for [ENSG00000231646.6]
WARNING, no entry stored in dbm for [ENSG00000237877.7]
WARNING, no entry stored in dbm for [ENSG00000229848.1]
WARNING, no entry stored in dbm for [ENSG00000258891.1]
WARNING, no entry stored in dbm for [ENSG00000180211.5]
WARNING, no entry stored in dbm for [ENSG00000198468.9]
WARNING, no entry stored in dbm for [ENSG00000235618.8]
WARNING, no entry stored in dbm for [ENSG00000271848.2]
WARNING, no entry stored in dbm for [ENSG00000175170.16]
WARNING, no entry stored in dbm for [ENSG00000175170.16]
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000232022.7]
WARNING, no entry stored in dbm for [ENSG00000287985.1]
WARNING, no entry stored in dbm for [ENSG00000232600.3]
WARNING, no entry stored in dbm for [ENSG00000250251.6]
WARNING, no entry stored in dbm for [ENSG00000228980.4]
WARNING, no entry stored in dbm for [ENSG00000224032.7]
WARNING, no entry stored in dbm for [ENSG00000249188.1]
WARNING, no entry stored in dbm for [ENSG00000284727.1]
WARNING, no entry stored in dbm for [ENSG00000261348.2]
WARNING, no entry stored in dbm for [ENSG00000255441.1]
WARNING, no entry stored in dbm for [ENSG00000233426.3]
WARNING, no entry stored in dbm for [ENSG00000228213.5]
WARNING, no entry stored in dbm for [ENSG00000236698.1]
WARNING, no entry stored in dbm for [ENSG00000212664.5]
WARNING, no entry stored in dbm for [ENSG00000226472.8]
WARNING, no entry stored in dbm for [ENSG00000233057.1]
WARNING, no entry stored in dbm for [ENSG00000239203.1]
WARNING, no entry stored in dbm for [ENSG00000250006.2]
WARNING, no entry stored in dbm for [ENSG00000286122.1]
WARNING, no entry stored in dbm for [ENSG00000176124.15]
WARNING, no entry stored in dbm for [ENSG00000263070.1]
WARNING, no entry stored in dbm for [ENSG00000173077.16]
WARNING, no entry stored in dbm for [ENSG00000253704.2]
WARNING, no entry stored in dbm for [ENSG00000224931.4]
WARNING, no entry stored in dbm for [ENSG00000261564.1]
WARNING, no entry stored in dbm for [ENSG00000278903.3]
WARNING, no entry stored in dbm for [ENSG00000276077.4]
WARNING, no entry stored in dbm for [ENSG00000276077.4]
WARNING, no entry stored in dbm for [ENSG00000229957.1]
WARNING, no entry stored in dbm for [ENSG00000271181.1]
WARNING, no entry stored in dbm for [ENSG00000228335.1]
WARNING, no entry stored in dbm for [ENSG00000224216.1]
WARNING, no entry stored in dbm for [ENSG00000267453.7]
WARNING, no entry stored in dbm for [ENSG00000226312.7]
WARNING, no entry stored in dbm for [ENSG00000248508.8]
WARNING, no entry stored in dbm for [ENSG00000241621.1]
WARNING, no entry stored in dbm for [ENSG00000255121.2]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [ENSG00000236107.10]
WARNING, no entry stored in dbm for [ENSG00000223773.7]
WARNING, no entry stored in dbm for [ENSG00000224365.1]
WARNING, no entry stored in dbm for [ENSG00000286277.1]
WARNING, no entry stored in dbm for [ENSG00000286277.1]
WARNING, no entry stored in dbm for [ENSG00000286951.1]
WARNING, no entry stored in dbm for [ENSG00000240571.1]
WARNING, no entry stored in dbm for [ENSG00000233098.9]
WARNING, no entry stored in dbm for [ENSG00000269834.6]
WARNING, no entry stored in dbm for [ENSG00000230449.1]
WARNING, no entry stored in dbm for [ENSG00000242262.1]
WARNING, no entry stored in dbm for [ENSG00000254231.3]
WARNING, no entry stored in dbm for [ENSG00000278996.1]
WARNING, no entry stored in dbm for [ENSG00000270453.1]
WARNING, no entry stored in dbm for [ENSG00000253773.3]
WARNING, no entry stored in dbm for [ENSG00000223905.1]
WARNING, no entry stored in dbm for [ENSG00000242808.10]
WARNING, no entry stored in dbm for [ENSG00000176593.8]
WARNING, no entry stored in dbm for [ENSG00000222047.9]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000285756.2]
WARNING, no entry stored in dbm for [ENSG00000204790.9]
WARNING, no entry stored in dbm for [ENSG00000280424.1]
WARNING, no entry stored in dbm for [ENSG00000216657.1]
WARNING, no entry stored in dbm for [ENSG00000233146.1]
WARNING, no entry stored in dbm for [ENSG00000284671.1]
WARNING, no entry stored in dbm for [ENSG00000187172.15]
WARNING, no entry stored in dbm for [ENSG00000230202.1]
WARNING, no entry stored in dbm for [ENSG00000243960.1]
WARNING, no entry stored in dbm for [ENSG00000228801.6]
WARNING, no entry stored in dbm for [ENSG00000199377.1]
WARNING, no entry stored in dbm for [ENSG00000215409.4]
WARNING, no entry stored in dbm for [ENSG00000244198.7]
WARNING, no entry stored in dbm for [ENSG00000234558.1]
WARNING, no entry stored in dbm for [ENSG00000233013.10]
WARNING, no entry stored in dbm for [ENSG00000202233.2]
WARNING, no entry stored in dbm for [ENSG00000254590.1]
WARNING, no entry stored in dbm for [ENSG00000196312.15]
WARNING, no entry stored in dbm for [ENSG00000285561.1]
WARNING, no entry stored in dbm for [ENSG00000204352.4]
WARNING, no entry stored in dbm for [ENSG00000255435.7]
WARNING, no entry stored in dbm for [ENSG00000266456.1]
WARNING, no entry stored in dbm for [ENSG00000260254.1]
WARNING, no entry stored in dbm for [ENSG00000256916.1]
WARNING, no entry stored in dbm for [ENSG00000255028.5]
WARNING, no entry stored in dbm for [ENSG00000279467.1]
WARNING, no entry stored in dbm for [ENSG00000272578.5]
WARNING, no entry stored in dbm for [ENSG00000273104.1]
WARNING, no entry stored in dbm for [ENSG00000244301.6]
WARNING, no entry stored in dbm for [ENSG00000241859.7]
WARNING, no entry stored in dbm for [ENSG00000286325.1]
WARNING, no entry stored in dbm for [ENSG00000286359.1]
WARNING, no entry stored in dbm for [ENSG00000286151.1]
WARNING, no entry stored in dbm for [ENSG00000284740.1]
WARNING, no entry stored in dbm for [ENSG00000253585.1]
WARNING, no entry stored in dbm for [ENSG00000238287.1]
WARNING, no entry stored in dbm for [ENSG00000270780.1]
WARNING, no entry stored in dbm for [ENSG00000234589.4]
WARNING, no entry stored in dbm for [ENSG00000182021.10]
WARNING, no entry stored in dbm for [ENSG00000261373.1]
WARNING, no entry stored in dbm for [ENSG00000249602.1]
WARNING, no entry stored in dbm for [ENSG00000275846.1]
WARNING, no entry stored in dbm for [ENSG00000287811.1]
WARNING, no entry stored in dbm for [ENSG00000232499.2]
WARNING, no entry stored in dbm for [ENSG00000287398.1]
WARNING, no entry stored in dbm for [ENSG00000217801.10]
WARNING, no entry stored in dbm for [ENSG00000226465.3]
WARNING, no entry stored in dbm for [ENSG00000226707.1]
WARNING, no entry stored in dbm for [ENSG00000248503.2]
WARNING, no entry stored in dbm for [ENSG00000237137.1]
WARNING, no entry stored in dbm for [ENSG00000228436.3]
WARNING, no entry stored in dbm for [ENSG00000271631.1]
WARNING, no entry stored in dbm for [ENSG00000226668.5]
WARNING, no entry stored in dbm for [ENSG00000275139.1]
WARNING, no entry stored in dbm for [ENSG00000276805.2]
WARNING, no entry stored in dbm for [ENSG00000282572.2]
WARNING, no entry stored in dbm for [ENSG00000273162.1]
WARNING, no entry stored in dbm for [ENSG00000288044.1]
WARNING, no entry stored in dbm for [ENSG00000227486.2]
WARNING, no entry stored in dbm for [ENSG00000274760.1]
WARNING, no entry stored in dbm for [ENSG00000284830.1]
WARNING, no entry stored in dbm for [ENSG00000231769.3]
WARNING, no entry stored in dbm for [ENSG00000285875.1]
WARNING, no entry stored in dbm for [ENSG00000276150.1]
WARNING, no entry stored in dbm for [ENSG00000286652.1]
WARNING, no entry stored in dbm for [ENSG00000215022.7]
WARNING, no entry stored in dbm for [ENSG00000213542.3]
WARNING, no entry stored in dbm for [ENSG00000286912.1]
WARNING, no entry stored in dbm for [ENSG00000233208.6]
WARNING, no entry stored in dbm for [ENSG00000254319.6]
WARNING, no entry stored in dbm for [ENSG00000253853.3]
WARNING, no entry stored in dbm for [ENSG00000244620.1]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000263585.1]
WARNING, no entry stored in dbm for [ENSG00000241525.4]
WARNING, no entry stored in dbm for [ENSG00000233836.7]
WARNING, no entry stored in dbm for [ENSG00000273270.1]
WARNING, no entry stored in dbm for [ENSG00000254701.3]
WARNING, no entry stored in dbm for [ENSG00000286406.1]
WARNING, no entry stored in dbm for [ENSG00000259156.7]
WARNING, no entry stored in dbm for [ENSG00000243655.2]
WARNING, no entry stored in dbm for [ENSG00000274840.4]
WARNING, no entry stored in dbm for [ENSG00000273297.2]
WARNING, no entry stored in dbm for [ENSG00000276564.1]
WARNING, no entry stored in dbm for [ENSG00000260084.1]
WARNING, no entry stored in dbm for [ENSG00000284675.1]
WARNING, no entry stored in dbm for [ENSG00000287740.1]
WARNING, no entry stored in dbm for [ENSG00000287879.1]
WARNING, no entry stored in dbm for [ENSG00000261292.2]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000239572.3]
WARNING, no entry stored in dbm for [ENSG00000250159.7]
WARNING, no entry stored in dbm for [ENSG00000260955.2]
WARNING, no entry stored in dbm for [ENSG00000226869.6]
WARNING, no entry stored in dbm for [ENSG00000260955.2]
WARNING, no entry stored in dbm for [ENSG00000287839.1]
WARNING, no entry stored in dbm for [ENSG00000260955.2]
WARNING, no entry stored in dbm for [ENSG00000284294.1]
WARNING, no entry stored in dbm for [ENSG00000260236.1]
WARNING, no entry stored in dbm for [ENSG00000288063.1]
WARNING, no entry stored in dbm for [ENSG00000226945.1]
WARNING, no entry stored in dbm for [ENSG00000287129.1]
WARNING, no entry stored in dbm for [ENSG00000231646.6]
WARNING, no entry stored in dbm for [ENSG00000249392.1]
WARNING, no entry stored in dbm for [ENSG00000241357.1]
WARNING, no entry stored in dbm for [ENSG00000256625.1]
WARNING, no entry stored in dbm for [ENSG00000232979.1]
WARNING, no entry stored in dbm for [ENSG00000269001.2]
WARNING, no entry stored in dbm for [ENSG00000288620.1]
WARNING, no entry stored in dbm for [ENSG00000288620.1]
WARNING, no entry stored in dbm for [ENSG00000187953.10]
WARNING, no entry stored in dbm for [ENSG00000231317.1]
WARNING, no entry stored in dbm for [ENSG00000234686.1]
WARNING, no entry stored in dbm for [ENSG00000239969.5]
WARNING, no entry stored in dbm for [ENSG00000259418.1]
WARNING, no entry stored in dbm for [ENSG00000285035.1]
WARNING, no entry stored in dbm for [ENSG00000264296.1]
WARNING, no entry stored in dbm for [ENSG00000265994.2]
WARNING, no entry stored in dbm for [ENSG00000280828.1]
WARNING, no entry stored in dbm for [ENSG00000280828.1]
WARNING, no entry stored in dbm for [ENSG00000266980.1]
WARNING, no entry stored in dbm for [ENSG00000285632.1]
WARNING, no entry stored in dbm for [ENSG00000285632.1]
WARNING, no entry stored in dbm for [ENSG00000243491.1]
WARNING, no entry stored in dbm for [ENSG00000267886.1]
WARNING, no entry stored in dbm for [ENSG00000234072.1]
WARNING, no entry stored in dbm for [ENSG00000234129.8]
WARNING, no entry stored in dbm for [ENSG00000239985.2]
WARNING, no entry stored in dbm for [ENSG00000239985.2]
WARNING, no entry stored in dbm for [ENSG00000224365.1]
WARNING, no entry stored in dbm for [ENSG00000239985.2]
WARNING, no entry stored in dbm for [ENSG00000224365.1]
WARNING, no entry stored in dbm for [ENSG00000237473.2]
WARNING, no entry stored in dbm for [ENSG00000279421.1]
WARNING, no entry stored in dbm for [ENSG00000267002.4]
WARNING, no entry stored in dbm for [ENSG00000229212.8]
WARNING, no entry stored in dbm for [ENSG00000259475.1]
WARNING, no entry stored in dbm for [ENSG00000259945.1]
WARNING, no entry stored in dbm for [ENSG00000188002.10]
WARNING, no entry stored in dbm for [ENSG00000262262.1]
WARNING, no entry stored in dbm for [ENSG00000257386.1]
WARNING, no entry stored in dbm for [ENSG00000251131.2]
WARNING, no entry stored in dbm for [ENSG00000259429.5]
WARNING, no entry stored in dbm for [ENSG00000248538.8]
WARNING, no entry stored in dbm for [ENSG00000287200.1]
WARNING, no entry stored in dbm for [ENSG00000272800.3]
WARNING, no entry stored in dbm for [ENSG00000273007.2]
WARNING, no entry stored in dbm for [ENSG00000279569.1]
WARNING, no entry stored in dbm for [ENSG00000257570.1]
WARNING, no entry stored in dbm for [ENSG00000254325.2]
WARNING, no entry stored in dbm for [ENSG00000265802.2]
WARNING, no entry stored in dbm for [ENSG00000226380.9]
WARNING, no entry stored in dbm for [ENSG00000269032.1]
WARNING, no entry stored in dbm for [ENSG00000253166.2]
WARNING, no entry stored in dbm for [ENSG00000226453.2]
WARNING, no entry stored in dbm for [ENSG00000234773.7]
WARNING, no entry stored in dbm for [ENSG00000260409.1]
WARNING, no entry stored in dbm for [ENSG00000267265.5]
WARNING, no entry stored in dbm for [ENSG00000255476.1]
WARNING, no entry stored in dbm for [ENSG00000268119.6]
WARNING, no entry stored in dbm for [ENSG00000268119.6]
WARNING, no entry stored in dbm for [ENSG00000283695.1]
WARNING, no entry stored in dbm for [ENSG00000123870.10]
WARNING, no entry stored in dbm for [ENSG00000288253.1]
WARNING, no entry stored in dbm for [ENSG00000269779.1]
WARNING, no entry stored in dbm for [ENSG00000254887.1]
WARNING, no entry stored in dbm for [ENSG00000285517.1]
WARNING, no entry stored in dbm for [ENSG00000234162.3]
WARNING, no entry stored in dbm for [ENSG00000216895.9]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000284671.1]
WARNING, no entry stored in dbm for [ENSG00000284649.1]
WARNING, no entry stored in dbm for [ENSG00000284649.1]
WARNING, no entry stored in dbm for [ENSG00000284671.1]
WARNING, no entry stored in dbm for [ENSG00000260905.1]
WARNING, no entry stored in dbm for [ENSG00000279529.1]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000261273.1]
WARNING, no entry stored in dbm for [ENSG00000280007.1]
WARNING, no entry stored in dbm for [ENSG00000260850.2]
WARNING, no entry stored in dbm for [ENSG00000263307.1]
WARNING, no entry stored in dbm for [ENSG00000267324.1]
WARNING, no entry stored in dbm for [ENSG00000233230.1]
WARNING, no entry stored in dbm for [ENSG00000246225.7]
WARNING, no entry stored in dbm for [ENSG00000255418.6]
WARNING, no entry stored in dbm for [ENSG00000267191.2]
WARNING, no entry stored in dbm for [ENSG00000287249.1]
WARNING, no entry stored in dbm for [ENSG00000267056.2]
WARNING, no entry stored in dbm for [ENSG00000223831.1]
WARNING, no entry stored in dbm for [ENSG00000230305.2]
WARNING, no entry stored in dbm for [ENSG00000230305.2]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000241057.2]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000254610.3]
WARNING, no entry stored in dbm for [ENSG00000255367.3]
WARNING, no entry stored in dbm for [ENSG00000279377.1]
WARNING, no entry stored in dbm for [ENSG00000261872.1]
WARNING, no entry stored in dbm for [ENSG00000223969.6]
WARNING, no entry stored in dbm for [ENSG00000267698.1]
WARNING, no entry stored in dbm for [ENSG00000251595.7]
WARNING, no entry stored in dbm for [ENSG00000251595.7]
WARNING, no entry stored in dbm for [ENSG00000272800.3]


	* STAR-Fusion complete.  See output: /tmp/nxf.xHRN9EeFqO/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)