Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/dc0e8c1754e5517289cba0a23be718/BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/b336ef2f84eda07bdc98fb72691962/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/b336ef2f84eda07bdc98fb72691962/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory