Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/9bd1b707fab6651f826da940419f0d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/9e50d68a8b00fda496667fb9c653b7/A549_FFPE_01_RNA_0001_B23LG7FLT4_1_R2.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/9bd1b707fab6651f826da940419f0d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/9e50d68a8b00fda496667fb9c653b7/A549_FFPE_01_RNA_0001_B23LG7FLT4_1_R1.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory