[W::hts_idx_load3] The index file is older than the data file: A549_FFPE_01_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

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Total splicing  Events:	939
Known Splicing Events:	152
Partial Novel Splicing Events:	0
Novel Splicing Events:	787
Filtered Splicing Events:	0

Total splicing  Junctions:	109
Known Splicing Junctions:	13
Partial Novel Splicing Junctions:	0
Novel Splicing Junctions:	96

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Create BED file ...
Create Interact file ...