Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/ea93e46da6bd582932d770dbd03bfe/A549_FFPE_01_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/7bea65e4c47222751705f286fe452b/A549_FFPE_01_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/f789d11d3dfd58975ba1c1dd754edc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/dc36e9fcfde0e8fe43fb9c623e6ed7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/dc36e9fcfde0e8fe43fb9c623e6ed7/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 939
[W::hts_idx_load3] The index file is older than the data file: A549_FFPE_01_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	939
Known Splicing Events:	152
Partial Novel Splicing Events:	0
Novel Splicing Events:	787
Filtered Splicing Events:	0

Total splicing  Junctions:	109
Known Splicing Junctions:	13
Partial Novel Splicing Junctions:	0
Novel Splicing Junctions:	96

===================================================================
Create BED file ...
Create Interact file ...