Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/e7e472702900f870eec5eb9cd82518/A549_FFPE_01_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/3231eeede2403a4f3cb44acb9111a7/A549_FFPE_01_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/f789d11d3dfd58975ba1c1dd754edc/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/c46660bbb7de74f621f6d625630f05/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/c46660bbb7de74f621f6d625630f05/.command.run
==> STAGING COMPLETE (5 inputs)

reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (15) splicing reads. 12 splicing junctions. 3 known splicing junctions. 9 novel splicing junctions.
sampling 10% (30) splicing reads. 18 splicing junctions. 4 known splicing junctions. 14 novel splicing junctions.
sampling 15% (45) splicing reads. 19 splicing junctions. 4 known splicing junctions. 15 novel splicing junctions.
sampling 20% (60) splicing reads. 22 splicing junctions. 4 known splicing junctions. 18 novel splicing junctions.
sampling 25% (75) splicing reads. 24 splicing junctions. 4 known splicing junctions. 20 novel splicing junctions.
sampling 30% (90) splicing reads. 26 splicing junctions. 4 known splicing junctions. 22 novel splicing junctions.
sampling 35% (105) splicing reads. 26 splicing junctions. 4 known splicing junctions. 22 novel splicing junctions.
sampling 40% (120) splicing reads. 27 splicing junctions. 4 known splicing junctions. 23 novel splicing junctions.
sampling 45% (135) splicing reads. 27 splicing junctions. 4 known splicing junctions. 23 novel splicing junctions.
sampling 50% (151) splicing reads. 28 splicing junctions. 4 known splicing junctions. 24 novel splicing junctions.
sampling 55% (166) splicing reads. 31 splicing junctions. 4 known splicing junctions. 27 novel splicing junctions.
sampling 60% (181) splicing reads. 32 splicing junctions. 4 known splicing junctions. 28 novel splicing junctions.
sampling 65% (196) splicing reads. 32 splicing junctions. 4 known splicing junctions. 28 novel splicing junctions.
sampling 70% (211) splicing reads. 33 splicing junctions. 4 known splicing junctions. 29 novel splicing junctions.
sampling 75% (226) splicing reads. 33 splicing junctions. 4 known splicing junctions. 29 novel splicing junctions.
sampling 80% (241) splicing reads. 34 splicing junctions. 4 known splicing junctions. 30 novel splicing junctions.
sampling 85% (256) splicing reads. 34 splicing junctions. 4 known splicing junctions. 30 novel splicing junctions.
sampling 90% (271) splicing reads. 34 splicing junctions. 4 known splicing junctions. 30 novel splicing junctions.
sampling 95% (286) splicing reads. 35 splicing junctions. 4 known splicing junctions. 31 novel splicing junctions.
sampling 100% (302) splicing reads. 35 splicing junctions. 4 known splicing junctions. 31 novel splicing junctions.
null device 
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