.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (22Rv1_FFPE_RNA_0001_B23LG7FLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/e6989dd42b6b2cab0e5bb8e4fee856/.command.log
Size: 1.0 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (22Rv1_FFPE_RNA_0001_B23LG7FLT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-6ef41cd9-2e18-4687-842c-3f6f49c5643f/e6/b0f48d6d7a697674824d761d17ce05/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/e6989dd42b6b2cab0e5bb8e4fee856/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/e6989dd42b6b2cab0e5bb8e4fee856/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/dec195fe3fb8f67b180d317dee4557/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/708aa21a8e666fa3a78959d157bf56/22Rv1_FFPE_RNA_0001_B23LG7FLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

[32mRunning application...[0m

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cat: fusion_report_db/DB-timestamp.txt: No such file or directory