Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/249389748525065fbe3f3172044633/SW780_FFPE_RNA_0001_B23LG7FLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/c3b66f82a847f855c2218c7d1d6325/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/c3b66f82a847f855c2218c7d1d6325/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory