[W::hts_idx_load3] The index file is older than the data file: A673_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	304295769
Known Splicing Events:	301913323
Partial Novel Splicing Events:	1609906
Novel Splicing Events:	686219
Filtered Splicing Events:	86321

Total splicing  Junctions:	580463
Known Splicing Junctions:	274274
Partial Novel Splicing Junctions:	172764
Novel Splicing Junctions:	133425

===================================================================
Create BED file ...
Create Interact file ...