/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory May 28, 2026 9:22:49 PM com.intel.gkl.NativeLibraryLoader load INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so [Thu May 28 21:22:49 GMT 2026] CollectRnaSeqMetrics --REF_FLAT ref_annot.gtf.refflat --RIBOSOMAL_INTERVALS ctat_ref_annot.interval_list --STRAND_SPECIFICITY NONE --INPUT A673_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam --OUTPUT A673_FFPE_RNA_0001_B23LG7FLT4_3_rna_metrics.txt --TMP_DIR ./tmp --MINIMUM_LENGTH 500 --RRNA_FRAGMENT_PERCENTAGE 0.8 --METRIC_ACCUMULATION_LEVEL ALL_READS --END_BIAS_BASES 100 --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Thu May 28 21:22:49 GMT 2026] Executing as ?@nf-397fc87a294beb7f009d244eddaca3cf-f1a34-wvmd8 on Linux 6.12.83 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0 WARNING: BAM index file /tmp/nxf.XXXXkMN7Rx/A673_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam.bai is older than BAM /tmp/nxf.XXXXkMN7Rx/A673_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam INFO 2026-05-28 21:22:51 CollectRnaSeqMetrics Loaded 58279 genes. INFO 2026-05-28 21:23:02 SinglePassSamProgram Processed 1,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 11s. Last read position: chr1:1,280,634 INFO 2026-05-28 21:23:18 SinglePassSamProgram Processed 2,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 15s. Last read position: chr1:1,790,429 INFO 2026-05-28 21:23:27 SinglePassSamProgram Processed 3,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 9s. Last read position: chr1:6,386,133 INFO 2026-05-28 21:23:37 SinglePassSamProgram Processed 4,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 9s. Last read position: chr1:8,863,915 INFO 2026-05-28 21:23:51 SinglePassSamProgram Processed 5,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 14s. Last read position: chr1:11,020,526 INFO 2026-05-28 21:24:04 SinglePassSamProgram Processed 6,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 13s. Last read position: chr1:12,276,098 INFO 2026-05-28 21:24:14 SinglePassSamProgram Processed 7,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 9s. Last read position: chr1:16,133,598 INFO 2026-05-28 21:24:20 SinglePassSamProgram Processed 8,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 6s. Last read position: chr1:19,088,807 INFO 2026-05-28 21:24:37 SinglePassSamProgram Processed 9,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 17s. Last read position: chr1:20,655,719 INFO 2026-05-28 21:24:52 SinglePassSamProgram Processed 10,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 15s. Last read position: chr1:23,068,614 INFO 2026-05-28 21:25:02 SinglePassSamProgram Processed 11,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 9s. Last read position: chr1:24,661,324 INFO 2026-05-28 21:25:09 SinglePassSamProgram Processed 12,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 7s. Last read position: chr1:26,729,735 INFO 2026-05-28 21:25:19 SinglePassSamProgram Processed 13,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 9s. Last read position: chr1:27,892,097 INFO 2026-05-28 21:25:47 SinglePassSamProgram Processed 14,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 28s. Last read position: chr1:29,109,404 INFO 2026-05-28 21:26:04 SinglePassSamProgram Processed 15,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 16s. Last read position: chr1:32,228,597 INFO 2026-05-28 21:26:14 SinglePassSamProgram Processed 16,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 10s. Last read position: chr1:34,032,658 INFO 2026-05-28 21:26:21 SinglePassSamProgram Processed 17,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 6s. Last read position: chr1:35,737,020 INFO 2026-05-28 21:26:28 SinglePassSamProgram Processed 18,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 7s. Last read position: chr1:37,701,777 INFO 2026-05-28 21:27:17 SinglePassSamProgram Processed 19,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 49s. Last read position: chr1:39,479,835 INFO 2026-05-28 21:27:36 SinglePassSamProgram Processed 20,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 18s. Last read position: chr1:42,683,430 INFO 2026-05-28 21:27:49 SinglePassSamProgram Processed 21,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 12s. Last read position: chr1:43,976,793 INFO 2026-05-28 21:27:58 SinglePassSamProgram Processed 22,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 9s. Last read position: chr1:45,607,496 INFO 2026-05-28 21:28:11 SinglePassSamProgram Processed 23,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 13s. Last read position: chr1:51,361,219 INFO 2026-05-28 21:28:40 SinglePassSamProgram Processed 24,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 29s. Last read position: chr1:51,827,858 INFO 2026-05-28 21:28:55 SinglePassSamProgram Processed 25,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 14s. Last read position: chr1:54,757,516 INFO 2026-05-28 21:29:03 SinglePassSamProgram Processed 26,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 8s. Last read position: chr1:61,383,285 INFO 2026-05-28 21:29:26 SinglePassSamProgram Processed 27,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 22s. Last read position: chr1:66,368,918 INFO 2026-05-28 21:29:37 SinglePassSamProgram Processed 28,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 11s. Last read position: chr1:77,711,746 INFO 2026-05-28 21:29:44 SinglePassSamProgram Processed 29,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 7s. Last read position: chr1:90,712,593 INFO 2026-05-28 21:29:51 SinglePassSamProgram Processed 30,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 6s. Last read position: chr1:97,740,435 INFO 2026-05-28 21:29:59 SinglePassSamProgram Processed 31,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 7s. Last read position: chr1:109,267,920 INFO 2026-05-28 21:30:12 SinglePassSamProgram Processed 32,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 13s. Last read position: chr1:110,342,139 INFO 2026-05-28 21:30:21 SinglePassSamProgram Processed 33,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 8s. Last read position: chr1:113,980,382 INFO 2026-05-28 21:30:30 SinglePassSamProgram Processed 34,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 9s. Last read position: chr1:116,387,287 INFO 2026-05-28 21:30:41 SinglePassSamProgram Processed 35,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 11s. Last read position: chr1:119,721,264 INFO 2026-05-28 21:30:53 SinglePassSamProgram Processed 36,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 11s. Last read position: chr1:121,365,302 INFO 2026-05-28 21:30:58 SinglePassSamProgram Processed 37,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 4s. Last read position: chr1:146,158,776 INFO 2026-05-28 21:31:09 SinglePassSamProgram Processed 38,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 10s. Last read position: chr1:149,455,545 INFO 2026-05-28 21:31:10 SinglePassSamProgram Processed 39,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,892 INFO 2026-05-28 21:31:15 SinglePassSamProgram Processed 40,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 4s. Last read position: chr1:150,496,819 INFO 2026-05-28 21:31:24 SinglePassSamProgram Processed 41,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 9s. Last read position: chr1:151,399,687 INFO 2026-05-28 21:31:34 SinglePassSamProgram Processed 42,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 10s. Last read position: chr1:153,636,606 INFO 2026-05-28 21:31:43 SinglePassSamProgram Processed 43,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 9s. Last read position: chr1:154,170,408 INFO 2026-05-28 21:32:03 SinglePassSamProgram Processed 44,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 19s. Last read position: chr1:154,588,234 INFO 2026-05-28 21:32:21 SinglePassSamProgram Processed 45,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 17s. Last read position: chr1:155,261,691 INFO 2026-05-28 21:32:43 SinglePassSamProgram Processed 46,000,000 records. Elapsed time: 00:09:51s. Time for last 1,000,000: 22s. Last read position: chr1:155,952,214 INFO 2026-05-28 21:32:55 SinglePassSamProgram Processed 47,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 11s. Last read position: chr1:156,548,476 INFO 2026-05-28 21:33:02 SinglePassSamProgram Processed 48,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 7s. Last read position: chr1:160,213,243 INFO 2026-05-28 21:33:25 SinglePassSamProgram Processed 49,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 23s. Last read position: chr1:162,662,754 INFO 2026-05-28 21:33:34 SinglePassSamProgram Processed 50,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 8s. Last read position: chr1:171,522,177 INFO 2026-05-28 21:33:47 SinglePassSamProgram Processed 51,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 12s. Last read position: chr1:177,501,901 INFO 2026-05-28 21:33:53 SinglePassSamProgram Processed 52,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 6s. Last read position: chr1:183,103,441 INFO 2026-05-28 21:34:02 SinglePassSamProgram Processed 53,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 8s. Last read position: chr1:185,963,881 INFO 2026-05-28 21:34:19 SinglePassSamProgram Processed 54,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 16s. Last read position: chr1:186,189,683 INFO 2026-05-28 21:34:29 SinglePassSamProgram Processed 55,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 9s. Last read position: chr1:186,373,377 INFO 2026-05-28 21:34:40 SinglePassSamProgram Processed 56,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 10s. Last read position: chr1:201,293,999 INFO 2026-05-28 21:34:46 SinglePassSamProgram Processed 57,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 6s. Last read position: chr1:201,969,502 INFO 2026-05-28 21:35:01 SinglePassSamProgram Processed 58,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 14s. Last read position: chr1:205,241,844 INFO 2026-05-28 21:35:08 SinglePassSamProgram Processed 59,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 6s. Last read position: chr1:212,858,647 INFO 2026-05-28 21:35:13 SinglePassSamProgram Processed 60,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 4s. Last read position: chr1:220,157,278 INFO 2026-05-28 21:35:21 SinglePassSamProgram Processed 61,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 8s. Last read position: chr1:225,650,117 INFO 2026-05-28 21:35:38 SinglePassSamProgram Processed 62,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 16s. Last read position: chr1:228,277,217 INFO 2026-05-28 21:35:56 SinglePassSamProgram Processed 63,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 18s. Last read position: chr1:234,394,144 INFO 2026-05-28 21:36:10 SinglePassSamProgram Processed 64,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 13s. Last read position: chr1:244,854,978 INFO 2026-05-28 21:36:31 SinglePassSamProgram Processed 65,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 20s. Last read position: chr2:272,037 INFO 2026-05-28 21:36:37 SinglePassSamProgram Processed 66,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 5s. Last read position: chr2:8,747,988 INFO 2026-05-28 21:36:45 SinglePassSamProgram Processed 67,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 8s. Last read position: chr2:11,192,509 INFO 2026-05-28 21:36:59 SinglePassSamProgram Processed 68,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 14s. Last read position: chr2:23,642,720 INFO 2026-05-28 21:37:10 SinglePassSamProgram Processed 69,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 10s. Last read position: chr2:26,238,952 INFO 2026-05-28 21:37:18 SinglePassSamProgram Processed 70,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 7s. Last read position: chr2:27,226,227 INFO 2026-05-28 21:37:30 SinglePassSamProgram Processed 71,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 12s. Last read position: chr2:28,752,110 INFO 2026-05-28 21:37:41 SinglePassSamProgram Processed 72,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 10s. Last read position: chr2:32,599,739 INFO 2026-05-28 21:37:44 SinglePassSamProgram Processed 73,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,264 INFO 2026-05-28 21:37:51 SinglePassSamProgram Processed 74,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 6s. Last read position: chr2:32,916,264 INFO 2026-05-28 21:37:53 SinglePassSamProgram Processed 75,000,000 records. Elapsed time: 00:15:02s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406 INFO 2026-05-28 21:37:55 SinglePassSamProgram Processed 76,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,442 INFO 2026-05-28 21:38:02 SinglePassSamProgram Processed 77,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 7s. Last read position: chr2:39,326,183 INFO 2026-05-28 21:38:15 SinglePassSamProgram Processed 78,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 13s. Last read position: chr2:43,901,460 INFO 2026-05-28 21:38:26 SinglePassSamProgram Processed 79,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 11s. Last read position: chr2:48,346,374 INFO 2026-05-28 21:38:43 SinglePassSamProgram Processed 80,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 16s. Last read position: chr2:55,315,981 INFO 2026-05-28 21:39:30 SinglePassSamProgram Processed 81,000,000 records. Elapsed time: 00:16:38s. Time for last 1,000,000: 47s. Last read position: chr2:61,872,087 INFO 2026-05-28 21:39:39 SinglePassSamProgram Processed 82,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 8s. Last read position: chr2:68,317,108 INFO 2026-05-28 21:40:00 SinglePassSamProgram Processed 83,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 21s. Last read position: chr2:71,423,271 INFO 2026-05-28 21:40:08 SinglePassSamProgram Processed 84,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 8s. Last read position: chr2:74,198,646 INFO 2026-05-28 21:40:21 SinglePassSamProgram Processed 85,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 12s. Last read position: chr2:85,049,578 INFO 2026-05-28 21:40:30 SinglePassSamProgram Processed 86,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 9s. Last read position: chr2:86,951,339 INFO 2026-05-28 21:40:36 SinglePassSamProgram Processed 87,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 5s. Last read position: chr2:96,303,313 INFO 2026-05-28 21:40:45 SinglePassSamProgram Processed 88,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 8s. Last read position: chr2:101,005,972 INFO 2026-05-28 21:40:55 SinglePassSamProgram Processed 89,000,000 records. Elapsed time: 00:18:04s. Time for last 1,000,000: 10s. Last read position: chr2:108,749,113 INFO 2026-05-28 21:41:00 SinglePassSamProgram Processed 90,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 4s. Last read position: chr2:109,585,729 INFO 2026-05-28 21:41:05 SinglePassSamProgram Processed 91,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 4s. Last read position: chr2:110,669,508 INFO 2026-05-28 21:41:12 SinglePassSamProgram Processed 92,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 6s. Last read position: chr2:113,217,981 INFO 2026-05-28 21:41:22 SinglePassSamProgram Processed 93,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 10s. Last read position: chr2:127,496,110 INFO 2026-05-28 21:41:32 SinglePassSamProgram Processed 94,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 10s. Last read position: chr2:132,781,155 INFO 2026-05-28 21:41:46 SinglePassSamProgram Processed 95,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 13s. Last read position: chr2:144,517,306 INFO 2026-05-28 21:41:58 SinglePassSamProgram Processed 96,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 12s. Last read position: chr2:158,680,443 INFO 2026-05-28 21:42:16 SinglePassSamProgram Processed 97,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 17s. Last read position: chr2:169,925,714 INFO 2026-05-28 21:42:25 SinglePassSamProgram Processed 98,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 9s. Last read position: chr2:176,107,359 INFO 2026-05-28 21:42:47 SinglePassSamProgram Processed 99,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 21s. Last read position: chr2:181,062,790 INFO 2026-05-28 21:42:58 SinglePassSamProgram Processed 100,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 10s. Last read position: chr2:190,927,195 INFO 2026-05-28 21:43:14 SinglePassSamProgram Processed 101,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 16s. Last read position: chr2:199,925,766 INFO 2026-05-28 21:43:39 SinglePassSamProgram Processed 102,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 25s. Last read position: chr2:203,439,971 INFO 2026-05-28 21:43:49 SinglePassSamProgram Processed 103,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 10s. Last read position: chr2:211,901,759 INFO 2026-05-28 21:44:02 SinglePassSamProgram Processed 104,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 12s. Last read position: chr2:215,371,888 INFO 2026-05-28 21:44:27 SinglePassSamProgram Processed 105,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 24s. Last read position: chr2:215,376,522 INFO 2026-05-28 21:44:59 SinglePassSamProgram Processed 106,000,000 records. Elapsed time: 00:22:08s. Time for last 1,000,000: 32s. Last read position: chr2:215,384,875 INFO 2026-05-28 21:45:40 SinglePassSamProgram Processed 107,000,000 records. Elapsed time: 00:22:49s. Time for last 1,000,000: 41s. Last read position: chr2:215,399,302 INFO 2026-05-28 21:46:36 SinglePassSamProgram Processed 108,000,000 records. Elapsed time: 00:23:44s. Time for last 1,000,000: 55s. Last read position: chr2:215,410,099 INFO 2026-05-28 21:47:53 SinglePassSamProgram Processed 109,000,000 records. Elapsed time: 00:25:02s. Time for last 1,000,000: 77s. Last read position: chr2:215,433,356 INFO 2026-05-28 21:48:16 SinglePassSamProgram Processed 110,000,000 records. Elapsed time: 00:25:25s. Time for last 1,000,000: 23s. Last read position: chr2:217,804,585 INFO 2026-05-28 21:48:32 SinglePassSamProgram Processed 111,000,000 records. Elapsed time: 00:25:40s. Time for last 1,000,000: 15s. Last read position: chr2:218,981,967 INFO 2026-05-28 21:48:42 SinglePassSamProgram Processed 112,000,000 records. Elapsed time: 00:25:50s. Time for last 1,000,000: 10s. Last read position: chr2:222,927,178 INFO 2026-05-28 21:48:56 SinglePassSamProgram Processed 113,000,000 records. Elapsed time: 00:26:05s. Time for last 1,000,000: 14s. Last read position: chr2:229,879,996 INFO 2026-05-28 21:49:20 SinglePassSamProgram Processed 114,000,000 records. Elapsed time: 00:26:29s. Time for last 1,000,000: 24s. Last read position: chr2:231,708,643 INFO 2026-05-28 21:49:33 SinglePassSamProgram Processed 115,000,000 records. Elapsed time: 00:26:42s. Time for last 1,000,000: 12s. Last read position: chr2:238,061,079 INFO 2026-05-28 21:50:03 SinglePassSamProgram Processed 116,000,000 records. Elapsed time: 00:27:11s. Time for last 1,000,000: 29s. Last read position: chr2:240,750,493 INFO 2026-05-28 21:51:02 SinglePassSamProgram Processed 117,000,000 records. Elapsed time: 00:28:11s. Time for last 1,000,000: 59s. Last read position: chr2:241,488,186 INFO 2026-05-28 21:51:18 SinglePassSamProgram Processed 118,000,000 records. Elapsed time: 00:28:27s. Time for last 1,000,000: 15s. Last read position: chr3:9,757,107 INFO 2026-05-28 21:51:31 SinglePassSamProgram Processed 119,000,000 records. Elapsed time: 00:28:39s. Time for last 1,000,000: 12s. Last read position: chr3:12,606,249 INFO 2026-05-28 21:51:39 SinglePassSamProgram Processed 120,000,000 records. Elapsed time: 00:28:48s. Time for last 1,000,000: 8s. Last read position: chr3:16,269,266 INFO 2026-05-28 21:51:49 SinglePassSamProgram Processed 121,000,000 records. Elapsed time: 00:28:57s. Time for last 1,000,000: 9s. Last read position: chr3:32,727,848 INFO 2026-05-28 21:52:02 SinglePassSamProgram Processed 122,000,000 records. Elapsed time: 00:29:11s. Time for last 1,000,000: 13s. Last read position: chr3:40,462,087 INFO 2026-05-28 21:52:18 SinglePassSamProgram Processed 123,000,000 records. Elapsed time: 00:29:26s. Time for last 1,000,000: 15s. Last read position: chr3:47,435,105 INFO 2026-05-28 21:52:29 SinglePassSamProgram Processed 124,000,000 records. Elapsed time: 00:29:38s. Time for last 1,000,000: 11s. Last read position: chr3:49,012,531 INFO 2026-05-28 21:52:44 SinglePassSamProgram Processed 125,000,000 records. Elapsed time: 00:29:52s. Time for last 1,000,000: 14s. Last read position: chr3:50,320,252 INFO 2026-05-28 21:52:54 SinglePassSamProgram Processed 126,000,000 records. Elapsed time: 00:30:02s. Time for last 1,000,000: 9s. Last read position: chr3:53,233,169 INFO 2026-05-28 21:53:08 SinglePassSamProgram Processed 127,000,000 records. Elapsed time: 00:30:17s. Time for last 1,000,000: 14s. Last read position: chr3:72,996,971 INFO 2026-05-28 21:53:18 SinglePassSamProgram Processed 128,000,000 records. Elapsed time: 00:30:26s. Time for last 1,000,000: 9s. Last read position: chr3:100,728,828 INFO 2026-05-28 21:53:32 SinglePassSamProgram Processed 129,000,000 records. Elapsed time: 00:30:41s. Time for last 1,000,000: 14s. Last read position: chr3:113,660,424 INFO 2026-05-28 21:53:40 SinglePassSamProgram Processed 130,000,000 records. Elapsed time: 00:30:48s. Time for last 1,000,000: 7s. Last read position: chr3:123,209,317 INFO 2026-05-28 21:53:48 SinglePassSamProgram Processed 131,000,000 records. Elapsed time: 00:30:57s. Time for last 1,000,000: 8s. Last read position: chr3:127,617,027 INFO 2026-05-28 21:53:56 SinglePassSamProgram Processed 132,000,000 records. Elapsed time: 00:31:04s. Time for last 1,000,000: 7s. Last read position: chr3:129,437,042 INFO 2026-05-28 21:54:09 SinglePassSamProgram Processed 133,000,000 records. Elapsed time: 00:31:17s. Time for last 1,000,000: 13s. Last read position: chr3:136,326,851 INFO 2026-05-28 21:54:23 SinglePassSamProgram Processed 134,000,000 records. Elapsed time: 00:31:32s. Time for last 1,000,000: 14s. Last read position: chr3:146,071,121 INFO 2026-05-28 21:54:31 SinglePassSamProgram Processed 135,000,000 records. Elapsed time: 00:31:40s. Time for last 1,000,000: 7s. Last read position: chr3:155,893,610 INFO 2026-05-28 21:54:41 SinglePassSamProgram Processed 136,000,000 records. Elapsed time: 00:31:49s. Time for last 1,000,000: 9s. Last read position: chr3:170,084,545 INFO 2026-05-28 21:54:53 SinglePassSamProgram Processed 137,000,000 records. Elapsed time: 00:32:02s. Time for last 1,000,000: 12s. Last read position: chr3:180,986,986 INFO 2026-05-28 21:55:06 SinglePassSamProgram Processed 138,000,000 records. Elapsed time: 00:32:15s. Time for last 1,000,000: 13s. Last read position: chr3:184,315,769 INFO 2026-05-28 21:55:30 SinglePassSamProgram Processed 139,000,000 records. Elapsed time: 00:32:38s. Time for last 1,000,000: 23s. Last read position: chr3:186,080,035 INFO 2026-05-28 21:55:44 SinglePassSamProgram Processed 140,000,000 records. Elapsed time: 00:32:53s. Time for last 1,000,000: 14s. Last read position: chr3:194,137,801 INFO 2026-05-28 21:56:02 SinglePassSamProgram Processed 141,000,000 records. Elapsed time: 00:33:10s. Time for last 1,000,000: 17s. Last read position: chr3:197,243,575 INFO 2026-05-28 21:56:14 SinglePassSamProgram Processed 142,000,000 records. Elapsed time: 00:33:23s. Time for last 1,000,000: 12s. Last read position: chr4:1,323,163 INFO 2026-05-28 21:56:25 SinglePassSamProgram Processed 143,000,000 records. Elapsed time: 00:33:34s. Time for last 1,000,000: 11s. Last read position: chr4:1,744,787 INFO 2026-05-28 21:56:42 SinglePassSamProgram Processed 144,000,000 records. Elapsed time: 00:33:50s. Time for last 1,000,000: 16s. Last read position: chr4:2,931,839 INFO 2026-05-28 21:56:57 SinglePassSamProgram Processed 145,000,000 records. Elapsed time: 00:34:05s. Time for last 1,000,000: 15s. Last read position: chr4:7,001,238 INFO 2026-05-28 21:57:06 SinglePassSamProgram Processed 146,000,000 records. Elapsed time: 00:34:14s. Time for last 1,000,000: 8s. Last read position: chr4:15,644,703 INFO 2026-05-28 21:57:16 SinglePassSamProgram Processed 147,000,000 records. Elapsed time: 00:34:24s. Time for last 1,000,000: 10s. Last read position: chr4:30,721,565 INFO 2026-05-28 21:57:21 SinglePassSamProgram Processed 148,000,000 records. Elapsed time: 00:34:30s. Time for last 1,000,000: 5s. Last read position: chr4:39,917,094 INFO 2026-05-28 21:57:33 SinglePassSamProgram Processed 149,000,000 records. Elapsed time: 00:34:41s. Time for last 1,000,000: 11s. Last read position: chr4:55,878,007 INFO 2026-05-28 21:57:44 SinglePassSamProgram Processed 150,000,000 records. Elapsed time: 00:34:53s. Time for last 1,000,000: 11s. Last read position: chr4:76,996,452 INFO 2026-05-28 21:58:03 SinglePassSamProgram Processed 151,000,000 records. Elapsed time: 00:35:11s. Time for last 1,000,000: 18s. Last read position: chr4:86,762,856 INFO 2026-05-28 21:58:17 SinglePassSamProgram Processed 152,000,000 records. Elapsed time: 00:35:25s. Time for last 1,000,000: 14s. Last read position: chr4:99,949,674 INFO 2026-05-28 21:58:28 SinglePassSamProgram Processed 153,000,000 records. Elapsed time: 00:35:37s. Time for last 1,000,000: 11s. Last read position: chr4:107,644,854 INFO 2026-05-28 21:58:50 SinglePassSamProgram Processed 154,000,000 records. Elapsed time: 00:35:58s. Time for last 1,000,000: 21s. Last read position: chr4:120,065,783 INFO 2026-05-28 21:58:59 SinglePassSamProgram Processed 155,000,000 records. Elapsed time: 00:36:08s. Time for last 1,000,000: 9s. Last read position: chr4:125,491,254 INFO 2026-05-28 21:59:06 SinglePassSamProgram Processed 156,000,000 records. Elapsed time: 00:36:14s. Time for last 1,000,000: 6s. Last read position: chr4:143,337,148 INFO 2026-05-28 21:59:22 SinglePassSamProgram Processed 157,000,000 records. Elapsed time: 00:36:30s. Time for last 1,000,000: 16s. Last read position: chr4:152,872,453 INFO 2026-05-28 21:59:39 SinglePassSamProgram Processed 158,000,000 records. Elapsed time: 00:36:47s. Time for last 1,000,000: 16s. Last read position: chr4:169,750,586 INFO 2026-05-28 21:59:46 SinglePassSamProgram Processed 159,000,000 records. Elapsed time: 00:36:55s. Time for last 1,000,000: 7s. Last read position: chr4:186,708,893 INFO 2026-05-28 21:59:54 SinglePassSamProgram Processed 160,000,000 records. Elapsed time: 00:37:02s. Time for last 1,000,000: 7s. Last read position: chr5:6,604,671 INFO 2026-05-28 22:00:09 SinglePassSamProgram Processed 161,000,000 records. Elapsed time: 00:37:17s. Time for last 1,000,000: 14s. Last read position: chr5:14,461,187 INFO 2026-05-28 22:00:31 SinglePassSamProgram Processed 162,000,000 records. Elapsed time: 00:37:40s. Time for last 1,000,000: 22s. Last read position: chr5:17,275,281 INFO 2026-05-28 22:00:39 SinglePassSamProgram Processed 163,000,000 records. Elapsed time: 00:37:48s. Time for last 1,000,000: 7s. Last read position: chr5:34,925,354 INFO 2026-05-28 22:00:50 SinglePassSamProgram Processed 164,000,000 records. Elapsed time: 00:37:59s. Time for last 1,000,000: 10s. Last read position: chr5:37,324,100 INFO 2026-05-28 22:01:00 SinglePassSamProgram Processed 165,000,000 records. Elapsed time: 00:38:08s. Time for last 1,000,000: 9s. Last read position: chr5:54,053,449 INFO 2026-05-28 22:01:09 SinglePassSamProgram Processed 166,000,000 records. Elapsed time: 00:38:18s. Time for last 1,000,000: 9s. Last read position: chr5:62,398,707 INFO 2026-05-28 22:01:19 SinglePassSamProgram Processed 167,000,000 records. Elapsed time: 00:38:28s. Time for last 1,000,000: 10s. Last read position: chr5:69,916,101 INFO 2026-05-28 22:01:24 SinglePassSamProgram Processed 168,000,000 records. Elapsed time: 00:38:32s. Time for last 1,000,000: 4s. Last read position: chr5:71,539,596 INFO 2026-05-28 22:01:33 SinglePassSamProgram Processed 169,000,000 records. Elapsed time: 00:38:41s. Time for last 1,000,000: 8s. Last read position: chr5:75,350,039 INFO 2026-05-28 22:01:44 SinglePassSamProgram Processed 170,000,000 records. Elapsed time: 00:38:52s. Time for last 1,000,000: 10s. Last read position: chr5:81,665,302 INFO 2026-05-28 22:01:55 SinglePassSamProgram Processed 171,000,000 records. Elapsed time: 00:39:03s. Time for last 1,000,000: 11s. Last read position: chr5:98,872,092 INFO 2026-05-28 22:02:04 SinglePassSamProgram Processed 172,000,000 records. Elapsed time: 00:39:12s. Time for last 1,000,000: 8s. Last read position: chr5:116,486,773 INFO 2026-05-28 22:02:19 SinglePassSamProgram Processed 173,000,000 records. Elapsed time: 00:39:27s. Time for last 1,000,000: 15s. Last read position: chr5:132,598,077 INFO 2026-05-28 22:02:26 SinglePassSamProgram Processed 174,000,000 records. Elapsed time: 00:39:35s. Time for last 1,000,000: 7s. Last read position: chr5:134,854,931 INFO 2026-05-28 22:02:34 SinglePassSamProgram Processed 175,000,000 records. Elapsed time: 00:39:42s. Time for last 1,000,000: 7s. Last read position: chr5:138,556,572 INFO 2026-05-28 22:02:52 SinglePassSamProgram Processed 176,000,000 records. Elapsed time: 00:40:01s. Time for last 1,000,000: 18s. Last read position: chr5:140,528,971 INFO 2026-05-28 22:02:59 SinglePassSamProgram Processed 177,000,000 records. Elapsed time: 00:40:07s. Time for last 1,000,000: 6s. Last read position: chr5:140,927,391 INFO 2026-05-28 22:03:02 SinglePassSamProgram Processed 178,000,000 records. Elapsed time: 00:40:10s. Time for last 1,000,000: 2s. Last read position: chr5:141,319,147 INFO 2026-05-28 22:03:06 SinglePassSamProgram Processed 179,000,000 records. Elapsed time: 00:40:14s. Time for last 1,000,000: 4s. Last read position: chr5:141,534,357 INFO 2026-05-28 22:03:28 SinglePassSamProgram Processed 180,000,000 records. Elapsed time: 00:40:36s. Time for last 1,000,000: 21s. Last read position: chr5:147,583,848 INFO 2026-05-28 22:03:40 SinglePassSamProgram Processed 181,000,000 records. Elapsed time: 00:40:49s. Time for last 1,000,000: 12s. Last read position: chr5:150,535,781 INFO 2026-05-28 22:03:56 SinglePassSamProgram Processed 182,000,000 records. Elapsed time: 00:41:04s. Time for last 1,000,000: 15s. Last read position: chr5:154,891,691 INFO 2026-05-28 22:04:04 SinglePassSamProgram Processed 183,000,000 records. Elapsed time: 00:41:13s. Time for last 1,000,000: 8s. Last read position: chr5:168,262,639 INFO 2026-05-28 22:04:20 SinglePassSamProgram Processed 184,000,000 records. Elapsed time: 00:41:28s. Time for last 1,000,000: 15s. Last read position: chr5:171,392,712 INFO 2026-05-28 22:04:48 SinglePassSamProgram Processed 185,000,000 records. Elapsed time: 00:41:56s. Time for last 1,000,000: 27s. Last read position: chr5:172,959,938 INFO 2026-05-28 22:04:55 SinglePassSamProgram Processed 186,000,000 records. Elapsed time: 00:42:03s. Time for last 1,000,000: 7s. Last read position: chr5:177,332,072 INFO 2026-05-28 22:05:02 SinglePassSamProgram Processed 187,000,000 records. Elapsed time: 00:42:11s. Time for last 1,000,000: 7s. Last read position: chr5:178,210,144 INFO 2026-05-28 22:05:23 SinglePassSamProgram Processed 188,000,000 records. Elapsed time: 00:42:32s. Time for last 1,000,000: 20s. Last read position: chr5:179,863,586 INFO 2026-05-28 22:05:33 SinglePassSamProgram Processed 189,000,000 records. Elapsed time: 00:42:42s. Time for last 1,000,000: 9s. Last read position: chr6:3,154,288 INFO 2026-05-28 22:05:39 SinglePassSamProgram Processed 190,000,000 records. Elapsed time: 00:42:47s. Time for last 1,000,000: 5s. Last read position: chr6:7,230,982 INFO 2026-05-28 22:05:46 SinglePassSamProgram Processed 191,000,000 records. Elapsed time: 00:42:54s. Time for last 1,000,000: 6s. Last read position: chr6:15,627,440 INFO 2026-05-28 22:05:51 SinglePassSamProgram Processed 192,000,000 records. Elapsed time: 00:43:00s. Time for last 1,000,000: 5s. Last read position: chr6:26,020,502 INFO 2026-05-28 22:05:53 SinglePassSamProgram Processed 193,000,000 records. Elapsed time: 00:43:02s. Time for last 1,000,000: 1s. Last read position: chr6:26,158,430 INFO 2026-05-28 22:05:55 SinglePassSamProgram Processed 194,000,000 records. Elapsed time: 00:43:03s. Time for last 1,000,000: 1s. Last read position: chr6:26,251,966 INFO 2026-05-28 22:05:57 SinglePassSamProgram Processed 195,000,000 records. Elapsed time: 00:43:05s. Time for last 1,000,000: 1s. Last read position: chr6:27,810,137 INFO 2026-05-28 22:05:58 SinglePassSamProgram Processed 196,000,000 records. Elapsed time: 00:43:06s. Time for last 1,000,000: 1s. Last read position: chr6:27,872,184 INFO 2026-05-28 22:06:03 SinglePassSamProgram Processed 197,000,000 records. Elapsed time: 00:43:12s. Time for last 1,000,000: 5s. Last read position: chr6:30,601,943 INFO 2026-05-28 22:06:12 SinglePassSamProgram Processed 198,000,000 records. Elapsed time: 00:43:20s. Time for last 1,000,000: 8s. Last read position: chr6:31,532,818 INFO 2026-05-28 22:06:29 SinglePassSamProgram Processed 199,000,000 records. Elapsed time: 00:43:37s. Time for last 1,000,000: 17s. Last read position: chr6:31,651,665 INFO 2026-05-28 22:06:36 SinglePassSamProgram Processed 200,000,000 records. Elapsed time: 00:43:44s. Time for last 1,000,000: 6s. Last read position: chr6:31,880,147 INFO 2026-05-28 22:06:48 SinglePassSamProgram Processed 201,000,000 records. Elapsed time: 00:43:56s. Time for last 1,000,000: 12s. Last read position: chr6:33,204,946 INFO 2026-05-28 22:06:57 SinglePassSamProgram Processed 202,000,000 records. Elapsed time: 00:44:06s. Time for last 1,000,000: 9s. Last read position: chr6:33,451,865 INFO 2026-05-28 22:07:04 SinglePassSamProgram Processed 203,000,000 records. Elapsed time: 00:44:12s. Time for last 1,000,000: 6s. Last read position: chr6:36,213,952 INFO 2026-05-28 22:07:09 SinglePassSamProgram Processed 204,000,000 records. Elapsed time: 00:44:17s. Time for last 1,000,000: 5s. Last read position: chr6:41,646,220 INFO 2026-05-28 22:07:18 SinglePassSamProgram Processed 205,000,000 records. Elapsed time: 00:44:26s. Time for last 1,000,000: 8s. Last read position: chr6:43,076,498 INFO 2026-05-28 22:07:30 SinglePassSamProgram Processed 206,000,000 records. Elapsed time: 00:44:39s. Time for last 1,000,000: 12s. Last read position: chr6:44,232,880 INFO 2026-05-28 22:07:37 SinglePassSamProgram Processed 207,000,000 records. Elapsed time: 00:44:45s. Time for last 1,000,000: 6s. Last read position: chr6:52,995,704 INFO 2026-05-28 22:07:58 SinglePassSamProgram Processed 208,000,000 records. Elapsed time: 00:45:07s. Time for last 1,000,000: 21s. Last read position: chr6:68,780,997 INFO 2026-05-28 22:08:20 SinglePassSamProgram Processed 209,000,000 records. Elapsed time: 00:45:28s. Time for last 1,000,000: 21s. Last read position: chr6:81,752,135 INFO 2026-05-28 22:08:39 SinglePassSamProgram Processed 210,000,000 records. Elapsed time: 00:45:48s. Time for last 1,000,000: 19s. Last read position: chr6:87,701,809 INFO 2026-05-28 22:08:55 SinglePassSamProgram Processed 211,000,000 records. Elapsed time: 00:46:04s. Time for last 1,000,000: 15s. Last read position: chr6:99,401,609 INFO 2026-05-28 22:09:09 SinglePassSamProgram Processed 212,000,000 records. Elapsed time: 00:46:18s. Time for last 1,000,000: 14s. Last read position: chr6:110,102,010 INFO 2026-05-28 22:09:25 SinglePassSamProgram Processed 213,000,000 records. Elapsed time: 00:46:33s. Time for last 1,000,000: 15s. Last read position: chr6:117,998,954 INFO 2026-05-28 22:09:40 SinglePassSamProgram Processed 214,000,000 records. Elapsed time: 00:46:48s. Time for last 1,000,000: 15s. Last read position: chr6:130,956,310 INFO 2026-05-28 22:09:56 SinglePassSamProgram Processed 215,000,000 records. Elapsed time: 00:47:04s. Time for last 1,000,000: 15s. Last read position: chr6:139,373,688 INFO 2026-05-28 22:10:04 SinglePassSamProgram Processed 216,000,000 records. Elapsed time: 00:47:12s. Time for last 1,000,000: 8s. Last read position: chr6:150,949,057 INFO 2026-05-28 22:10:20 SinglePassSamProgram Processed 217,000,000 records. Elapsed time: 00:47:28s. Time for last 1,000,000: 16s. Last read position: chr6:158,502,912 INFO 2026-05-28 22:10:30 SinglePassSamProgram Processed 218,000,000 records. Elapsed time: 00:47:39s. Time for last 1,000,000: 10s. Last read position: chr6:160,084,104 INFO 2026-05-28 22:10:46 SinglePassSamProgram Processed 219,000,000 records. Elapsed time: 00:47:55s. Time for last 1,000,000: 15s. Last read position: chr6:170,549,008 INFO 2026-05-28 22:10:56 SinglePassSamProgram Processed 220,000,000 records. Elapsed time: 00:48:05s. Time for last 1,000,000: 10s. Last read position: chr7:2,360,784 INFO 2026-05-28 22:11:04 SinglePassSamProgram Processed 221,000,000 records. Elapsed time: 00:48:13s. Time for last 1,000,000: 8s. Last read position: chr7:5,313,352 INFO 2026-05-28 22:11:13 SinglePassSamProgram Processed 222,000,000 records. Elapsed time: 00:48:22s. Time for last 1,000,000: 8s. Last read position: chr7:5,529,161 INFO 2026-05-28 22:11:22 SinglePassSamProgram Processed 223,000,000 records. Elapsed time: 00:48:30s. Time for last 1,000,000: 8s. Last read position: chr7:6,474,232 INFO 2026-05-28 22:11:31 SinglePassSamProgram Processed 224,000,000 records. Elapsed time: 00:48:39s. Time for last 1,000,000: 9s. Last read position: chr7:22,813,037 INFO 2026-05-28 22:12:10 SinglePassSamProgram Processed 225,000,000 records. Elapsed time: 00:49:18s. Time for last 1,000,000: 38s. Last read position: chr7:29,194,924 INFO 2026-05-28 22:12:33 SinglePassSamProgram Processed 226,000,000 records. Elapsed time: 00:49:42s. Time for last 1,000,000: 23s. Last read position: chr7:39,690,523 INFO 2026-05-28 22:12:42 SinglePassSamProgram Processed 227,000,000 records. Elapsed time: 00:49:50s. Time for last 1,000,000: 8s. Last read position: chr7:44,490,465 INFO 2026-05-28 22:12:52 SinglePassSamProgram Processed 228,000,000 records. Elapsed time: 00:50:01s. Time for last 1,000,000: 10s. Last read position: chr7:56,059,558 INFO 2026-05-28 22:13:00 SinglePassSamProgram Processed 229,000,000 records. Elapsed time: 00:50:09s. Time for last 1,000,000: 8s. Last read position: chr7:72,942,594 INFO 2026-05-28 22:13:10 SinglePassSamProgram Processed 230,000,000 records. Elapsed time: 00:50:18s. Time for last 1,000,000: 9s. Last read position: chr7:74,115,838 INFO 2026-05-28 22:13:24 SinglePassSamProgram Processed 231,000,000 records. Elapsed time: 00:50:32s. Time for last 1,000,000: 14s. Last read position: chr7:75,417,834 INFO 2026-05-28 22:13:34 SinglePassSamProgram Processed 232,000,000 records. Elapsed time: 00:50:43s. Time for last 1,000,000: 10s. Last read position: chr7:76,540,179 INFO 2026-05-28 22:13:44 SinglePassSamProgram Processed 233,000,000 records. Elapsed time: 00:50:53s. Time for last 1,000,000: 10s. Last read position: chr7:91,265,300 INFO 2026-05-28 22:14:58 SinglePassSamProgram Processed 234,000,000 records. Elapsed time: 00:52:07s. Time for last 1,000,000: 74s. Last read position: chr7:94,421,928 INFO 2026-05-28 22:15:16 SinglePassSamProgram Processed 235,000,000 records. Elapsed time: 00:52:25s. Time for last 1,000,000: 17s. Last read position: chr7:98,386,019 INFO 2026-05-28 22:15:41 SinglePassSamProgram Processed 236,000,000 records. Elapsed time: 00:52:50s. Time for last 1,000,000: 24s. Last read position: chr7:100,095,834 INFO 2026-05-28 22:15:51 SinglePassSamProgram Processed 237,000,000 records. Elapsed time: 00:52:59s. Time for last 1,000,000: 9s. Last read position: chr7:100,707,105 INFO 2026-05-28 22:16:05 SinglePassSamProgram Processed 238,000,000 records. Elapsed time: 00:53:14s. Time for last 1,000,000: 14s. Last read position: chr7:102,555,883 INFO 2026-05-28 22:16:20 SinglePassSamProgram Processed 239,000,000 records. Elapsed time: 00:53:28s. Time for last 1,000,000: 14s. Last read position: chr7:107,748,914 INFO 2026-05-28 22:16:39 SinglePassSamProgram Processed 240,000,000 records. Elapsed time: 00:53:48s. Time for last 1,000,000: 19s. Last read position: chr7:119,691,839 INFO 2026-05-28 22:16:50 SinglePassSamProgram Processed 241,000,000 records. Elapsed time: 00:53:58s. Time for last 1,000,000: 10s. Last read position: chr7:127,844,383 INFO 2026-05-28 22:16:59 SinglePassSamProgram Processed 242,000,000 records. Elapsed time: 00:54:07s. Time for last 1,000,000: 8s. Last read position: chr7:129,422,901 INFO 2026-05-28 22:17:07 SinglePassSamProgram Processed 243,000,000 records. Elapsed time: 00:54:16s. Time for last 1,000,000: 8s. Last read position: chr7:135,929,841 INFO 2026-05-28 22:17:16 SinglePassSamProgram Processed 244,000,000 records. Elapsed time: 00:54:24s. Time for last 1,000,000: 8s. Last read position: chr7:140,834,665 INFO 2026-05-28 22:17:27 SinglePassSamProgram Processed 245,000,000 records. Elapsed time: 00:54:35s. Time for last 1,000,000: 10s. Last read position: chr7:148,814,127 INFO 2026-05-28 22:17:35 SinglePassSamProgram Processed 246,000,000 records. Elapsed time: 00:54:43s. Time for last 1,000,000: 7s. Last read position: chr7:151,070,849 INFO 2026-05-28 22:17:54 SinglePassSamProgram Processed 247,000,000 records. Elapsed time: 00:55:03s. Time for last 1,000,000: 19s. Last read position: chr7:155,308,248 INFO 2026-05-28 22:18:03 SinglePassSamProgram Processed 248,000,000 records. Elapsed time: 00:55:11s. Time for last 1,000,000: 8s. Last read position: chr8:9,003,073 INFO 2026-05-28 22:18:13 SinglePassSamProgram Processed 249,000,000 records. Elapsed time: 00:55:22s. Time for last 1,000,000: 10s. Last read position: chr8:13,021,320 INFO 2026-05-28 22:18:25 SinglePassSamProgram Processed 250,000,000 records. Elapsed time: 00:55:34s. Time for last 1,000,000: 11s. Last read position: chr8:22,098,294 INFO 2026-05-28 22:18:35 SinglePassSamProgram Processed 251,000,000 records. Elapsed time: 00:55:44s. Time for last 1,000,000: 9s. Last read position: chr8:23,022,700 INFO 2026-05-28 22:18:41 SinglePassSamProgram Processed 252,000,000 records. Elapsed time: 00:55:50s. Time for last 1,000,000: 6s. Last read position: chr8:26,634,891 INFO 2026-05-28 22:18:49 SinglePassSamProgram Processed 253,000,000 records. Elapsed time: 00:55:57s. Time for last 1,000,000: 7s. Last read position: chr8:31,064,994 INFO 2026-05-28 22:18:54 SinglePassSamProgram Processed 254,000,000 records. Elapsed time: 00:56:03s. Time for last 1,000,000: 5s. Last read position: chr8:37,845,636 INFO 2026-05-28 22:19:02 SinglePassSamProgram Processed 255,000,000 records. Elapsed time: 00:56:10s. Time for last 1,000,000: 7s. Last read position: chr8:38,413,629 INFO 2026-05-28 22:19:27 SinglePassSamProgram Processed 256,000,000 records. Elapsed time: 00:56:35s. Time for last 1,000,000: 24s. Last read position: chr8:42,048,864 INFO 2026-05-28 22:19:40 SinglePassSamProgram Processed 257,000,000 records. Elapsed time: 00:56:49s. Time for last 1,000,000: 13s. Last read position: chr8:47,902,637 INFO 2026-05-28 22:19:53 SinglePassSamProgram Processed 258,000,000 records. Elapsed time: 00:57:02s. Time for last 1,000,000: 13s. Last read position: chr8:56,166,294 INFO 2026-05-28 22:20:06 SinglePassSamProgram Processed 259,000,000 records. Elapsed time: 00:57:15s. Time for last 1,000,000: 13s. Last read position: chr8:69,672,773 INFO 2026-05-28 22:20:14 SinglePassSamProgram Processed 260,000,000 records. Elapsed time: 00:57:23s. Time for last 1,000,000: 7s. Last read position: chr8:76,704,721 INFO 2026-05-28 22:20:21 SinglePassSamProgram Processed 261,000,000 records. Elapsed time: 00:57:29s. Time for last 1,000,000: 6s. Last read position: chr8:99,702,560 INFO 2026-05-28 22:20:40 SinglePassSamProgram Processed 262,000,000 records. Elapsed time: 00:57:49s. Time for last 1,000,000: 19s. Last read position: chr8:119,862,787 INFO 2026-05-28 22:20:48 SinglePassSamProgram Processed 263,000,000 records. Elapsed time: 00:57:56s. Time for last 1,000,000: 7s. Last read position: chr8:127,738,449 INFO 2026-05-28 22:21:02 SinglePassSamProgram Processed 264,000,000 records. Elapsed time: 00:58:10s. Time for last 1,000,000: 14s. Last read position: chr8:140,559,507 INFO 2026-05-28 22:21:22 SinglePassSamProgram Processed 265,000,000 records. Elapsed time: 00:58:30s. Time for last 1,000,000: 19s. Last read position: chr8:143,589,421 INFO 2026-05-28 22:21:33 SinglePassSamProgram Processed 266,000,000 records. Elapsed time: 00:58:42s. Time for last 1,000,000: 11s. Last read position: chr8:143,865,287 INFO 2026-05-28 22:21:43 SinglePassSamProgram Processed 267,000,000 records. Elapsed time: 00:58:52s. Time for last 1,000,000: 10s. Last read position: chr8:144,099,583 INFO 2026-05-28 22:21:52 SinglePassSamProgram Processed 268,000,000 records. Elapsed time: 00:59:01s. Time for last 1,000,000: 8s. Last read position: chr8:144,424,707 INFO 2026-05-28 22:21:59 SinglePassSamProgram Processed 269,000,000 records. Elapsed time: 00:59:07s. Time for last 1,000,000: 6s. Last read position: chr8:144,841,626 INFO 2026-05-28 22:22:13 SinglePassSamProgram Processed 270,000,000 records. Elapsed time: 00:59:21s. Time for last 1,000,000: 13s. Last read position: chr9:9,442,138 INFO 2026-05-28 22:22:27 SinglePassSamProgram Processed 271,000,000 records. Elapsed time: 00:59:35s. Time for last 1,000,000: 14s. Last read position: chr9:20,923,723 INFO 2026-05-28 22:22:34 SinglePassSamProgram Processed 272,000,000 records. Elapsed time: 00:59:43s. Time for last 1,000,000: 7s. Last read position: chr9:34,255,986 INFO 2026-05-28 22:22:50 SinglePassSamProgram Processed 273,000,000 records. Elapsed time: 00:59:58s. Time for last 1,000,000: 15s. Last read position: chr9:35,607,946 INFO 2026-05-28 22:22:57 SinglePassSamProgram Processed 274,000,000 records. Elapsed time: 01:00:06s. Time for last 1,000,000: 7s. Last read position: chr9:37,522,963 INFO 2026-05-28 22:23:06 SinglePassSamProgram Processed 275,000,000 records. Elapsed time: 01:00:14s. Time for last 1,000,000: 8s. Last read position: chr9:78,266,540 INFO 2026-05-28 22:23:14 SinglePassSamProgram Processed 276,000,000 records. Elapsed time: 01:00:22s. Time for last 1,000,000: 8s. Last read position: chr9:87,640,355 INFO 2026-05-28 22:23:33 SinglePassSamProgram Processed 277,000,000 records. Elapsed time: 01:00:41s. Time for last 1,000,000: 18s. Last read position: chr9:92,240,861 INFO 2026-05-28 22:23:44 SinglePassSamProgram Processed 278,000,000 records. Elapsed time: 01:00:53s. Time for last 1,000,000: 11s. Last read position: chr9:95,892,944 INFO 2026-05-28 22:23:51 SinglePassSamProgram Processed 279,000,000 records. Elapsed time: 01:00:59s. Time for last 1,000,000: 6s. Last read position: chr9:106,926,323 INFO 2026-05-28 22:24:10 SinglePassSamProgram Processed 280,000,000 records. Elapsed time: 01:01:18s. Time for last 1,000,000: 19s. Last read position: chr9:113,203,013 INFO 2026-05-28 22:24:20 SinglePassSamProgram Processed 281,000,000 records. Elapsed time: 01:01:28s. Time for last 1,000,000: 9s. Last read position: chr9:120,402,908 INFO 2026-05-28 22:24:33 SinglePassSamProgram Processed 282,000,000 records. Elapsed time: 01:01:41s. Time for last 1,000,000: 12s. Last read position: chr9:123,117,551 INFO 2026-05-28 22:24:45 SinglePassSamProgram Processed 283,000,000 records. Elapsed time: 01:01:53s. Time for last 1,000,000: 12s. Last read position: chr9:127,788,273 INFO 2026-05-28 22:25:01 SinglePassSamProgram Processed 284,000,000 records. Elapsed time: 01:02:09s. Time for last 1,000,000: 16s. Last read position: chr9:128,584,481 INFO 2026-05-28 22:25:17 SinglePassSamProgram Processed 285,000,000 records. Elapsed time: 01:02:26s. Time for last 1,000,000: 16s. Last read position: chr9:129,008,691 INFO 2026-05-28 22:25:25 SinglePassSamProgram Processed 286,000,000 records. Elapsed time: 01:02:33s. Time for last 1,000,000: 7s. Last read position: chr9:130,874,884 INFO 2026-05-28 22:25:34 SinglePassSamProgram Processed 287,000,000 records. Elapsed time: 01:02:43s. Time for last 1,000,000: 9s. Last read position: chr9:131,604,975 INFO 2026-05-28 22:25:42 SinglePassSamProgram Processed 288,000,000 records. Elapsed time: 01:02:51s. Time for last 1,000,000: 7s. Last read position: chr9:133,449,907 INFO 2026-05-28 22:25:48 SinglePassSamProgram Processed 289,000,000 records. Elapsed time: 01:02:57s. Time for last 1,000,000: 5s. Last read position: chr9:135,882,939 INFO 2026-05-28 22:26:02 SinglePassSamProgram Processed 290,000,000 records. Elapsed time: 01:03:10s. Time for last 1,000,000: 13s. Last read position: chr9:136,517,360 INFO 2026-05-28 22:26:18 SinglePassSamProgram Processed 291,000,000 records. Elapsed time: 01:03:27s. Time for last 1,000,000: 16s. Last read position: chr9:137,088,938 INFO 2026-05-28 22:26:28 SinglePassSamProgram Processed 292,000,000 records. Elapsed time: 01:03:36s. Time for last 1,000,000: 9s. Last read position: chr9:138,239,424 INFO 2026-05-28 22:26:45 SinglePassSamProgram Processed 293,000,000 records. Elapsed time: 01:03:53s. Time for last 1,000,000: 17s. Last read position: chr10:5,765,328 INFO 2026-05-28 22:26:53 SinglePassSamProgram Processed 294,000,000 records. Elapsed time: 01:04:02s. Time for last 1,000,000: 8s. Last read position: chr10:13,171,235 INFO 2026-05-28 22:27:04 SinglePassSamProgram Processed 295,000,000 records. Elapsed time: 01:04:12s. Time for last 1,000,000: 10s. Last read position: chr10:20,147,882 INFO 2026-05-28 22:27:19 SinglePassSamProgram Processed 296,000,000 records. Elapsed time: 01:04:28s. Time for last 1,000,000: 15s. Last read position: chr10:27,120,513 INFO 2026-05-28 22:27:30 SinglePassSamProgram Processed 297,000,000 records. Elapsed time: 01:04:39s. Time for last 1,000,000: 10s. Last read position: chr10:32,022,152 INFO 2026-05-28 22:27:43 SinglePassSamProgram Processed 298,000,000 records. Elapsed time: 01:04:51s. Time for last 1,000,000: 12s. Last read position: chr10:34,382,583 INFO 2026-05-28 22:27:52 SinglePassSamProgram Processed 299,000,000 records. Elapsed time: 01:05:00s. Time for last 1,000,000: 8s. Last read position: chr10:45,719,325 INFO 2026-05-28 22:27:58 SinglePassSamProgram Processed 300,000,000 records. Elapsed time: 01:05:07s. Time for last 1,000,000: 6s. Last read position: chr10:58,287,594 INFO 2026-05-28 22:28:06 SinglePassSamProgram Processed 301,000,000 records. Elapsed time: 01:05:15s. Time for last 1,000,000: 8s. Last read position: chr10:68,651,900 INFO 2026-05-28 22:28:19 SinglePassSamProgram Processed 302,000,000 records. Elapsed time: 01:05:28s. Time for last 1,000,000: 13s. Last read position: chr10:70,404,414 INFO 2026-05-28 22:28:30 SinglePassSamProgram Processed 303,000,000 records. Elapsed time: 01:05:38s. Time for last 1,000,000: 10s. Last read position: chr10:73,783,071 INFO 2026-05-28 22:28:44 SinglePassSamProgram Processed 304,000,000 records. Elapsed time: 01:05:52s. Time for last 1,000,000: 14s. Last read position: chr10:79,844,432 INFO 2026-05-28 22:28:49 SinglePassSamProgram Processed 305,000,000 records. Elapsed time: 01:05:58s. Time for last 1,000,000: 5s. Last read position: chr10:89,010,591 INFO 2026-05-28 22:29:05 SinglePassSamProgram Processed 306,000,000 records. Elapsed time: 01:06:14s. Time for last 1,000,000: 16s. Last read position: chr10:95,633,518 INFO 2026-05-28 22:29:16 SinglePassSamProgram Processed 307,000,000 records. Elapsed time: 01:06:25s. Time for last 1,000,000: 10s. Last read position: chr10:99,420,623 INFO 2026-05-28 22:29:22 SinglePassSamProgram Processed 308,000,000 records. Elapsed time: 01:06:30s. Time for last 1,000,000: 5s. Last read position: chr10:102,067,033 INFO 2026-05-28 22:29:54 SinglePassSamProgram Processed 309,000,000 records. Elapsed time: 01:07:02s. Time for last 1,000,000: 31s. Last read position: chr10:103,154,710 INFO 2026-05-28 22:30:03 SinglePassSamProgram Processed 310,000,000 records. Elapsed time: 01:07:12s. Time for last 1,000,000: 9s. Last read position: chr10:113,158,026 INFO 2026-05-28 22:30:11 SinglePassSamProgram Processed 311,000,000 records. Elapsed time: 01:07:19s. Time for last 1,000,000: 7s. Last read position: chr10:119,065,465 INFO 2026-05-28 22:30:19 SinglePassSamProgram Processed 312,000,000 records. Elapsed time: 01:07:27s. Time for last 1,000,000: 7s. Last read position: chr10:125,016,100 INFO 2026-05-28 22:30:25 SinglePassSamProgram Processed 313,000,000 records. Elapsed time: 01:07:33s. Time for last 1,000,000: 6s. Last read position: chr10:128,112,384 INFO 2026-05-28 22:30:31 SinglePassSamProgram Processed 314,000,000 records. Elapsed time: 01:07:40s. Time for last 1,000,000: 6s. Last read position: chr11:244,699 INFO 2026-05-28 22:30:43 SinglePassSamProgram Processed 315,000,000 records. Elapsed time: 01:07:51s. Time for last 1,000,000: 11s. Last read position: chr11:2,403,320 INFO 2026-05-28 22:30:59 SinglePassSamProgram Processed 316,000,000 records. Elapsed time: 01:08:08s. Time for last 1,000,000: 16s. Last read position: chr11:6,632,399 INFO 2026-05-28 22:31:16 SinglePassSamProgram Processed 317,000,000 records. Elapsed time: 01:08:25s. Time for last 1,000,000: 16s. Last read position: chr11:11,940,517 INFO 2026-05-28 22:31:25 SinglePassSamProgram Processed 318,000,000 records. Elapsed time: 01:08:33s. Time for last 1,000,000: 8s. Last read position: chr11:28,036,350 INFO 2026-05-28 22:31:34 SinglePassSamProgram Processed 319,000,000 records. Elapsed time: 01:08:43s. Time for last 1,000,000: 9s. Last read position: chr11:33,141,950 INFO 2026-05-28 22:31:48 SinglePassSamProgram Processed 320,000,000 records. Elapsed time: 01:08:56s. Time for last 1,000,000: 13s. Last read position: chr11:34,096,515 INFO 2026-05-28 22:32:02 SinglePassSamProgram Processed 321,000,000 records. Elapsed time: 01:09:10s. Time for last 1,000,000: 13s. Last read position: chr11:43,312,177 INFO 2026-05-28 22:32:14 SinglePassSamProgram Processed 322,000,000 records. Elapsed time: 01:09:22s. Time for last 1,000,000: 12s. Last read position: chr11:45,903,041 INFO 2026-05-28 22:32:39 SinglePassSamProgram Processed 323,000,000 records. Elapsed time: 01:09:48s. Time for last 1,000,000: 25s. Last read position: chr11:46,744,067 INFO 2026-05-28 22:33:04 SinglePassSamProgram Processed 324,000,000 records. Elapsed time: 01:10:12s. Time for last 1,000,000: 24s. Last read position: chr11:47,240,061 INFO 2026-05-28 22:33:26 SinglePassSamProgram Processed 325,000,000 records. Elapsed time: 01:10:34s. Time for last 1,000,000: 21s. Last read position: chr11:47,631,058 INFO 2026-05-28 22:33:37 SinglePassSamProgram Processed 326,000,000 records. Elapsed time: 01:10:46s. Time for last 1,000,000: 11s. Last read position: chr11:57,646,405 INFO 2026-05-28 22:33:53 SinglePassSamProgram Processed 327,000,000 records. Elapsed time: 01:11:01s. Time for last 1,000,000: 15s. Last read position: chr11:60,933,699 INFO 2026-05-28 22:34:27 SinglePassSamProgram Processed 328,000,000 records. Elapsed time: 01:11:36s. Time for last 1,000,000: 34s. Last read position: chr11:61,813,261 INFO 2026-05-28 22:34:43 SinglePassSamProgram Processed 329,000,000 records. Elapsed time: 01:11:52s. Time for last 1,000,000: 15s. Last read position: chr11:62,524,571 INFO 2026-05-28 22:34:55 SinglePassSamProgram Processed 330,000,000 records. Elapsed time: 01:12:03s. Time for last 1,000,000: 11s. Last read position: chr11:62,721,849 INFO 2026-05-28 22:35:11 SinglePassSamProgram Processed 331,000,000 records. Elapsed time: 01:12:20s. Time for last 1,000,000: 16s. Last read position: chr11:63,908,883 INFO 2026-05-28 22:35:22 SinglePassSamProgram Processed 332,000,000 records. Elapsed time: 01:12:31s. Time for last 1,000,000: 11s. Last read position: chr11:64,765,855 INFO 2026-05-28 22:35:43 SinglePassSamProgram Processed 333,000,000 records. Elapsed time: 01:12:51s. Time for last 1,000,000: 20s. Last read position: chr11:65,128,373 INFO 2026-05-28 22:35:59 SinglePassSamProgram Processed 334,000,000 records. Elapsed time: 01:13:08s. Time for last 1,000,000: 16s. Last read position: chr11:65,654,315 INFO 2026-05-28 22:36:16 SinglePassSamProgram Processed 335,000,000 records. Elapsed time: 01:13:24s. Time for last 1,000,000: 16s. Last read position: chr11:66,153,909 INFO 2026-05-28 22:36:27 SinglePassSamProgram Processed 336,000,000 records. Elapsed time: 01:13:35s. Time for last 1,000,000: 11s. Last read position: chr11:66,639,954 INFO 2026-05-28 22:36:48 SinglePassSamProgram Processed 337,000,000 records. Elapsed time: 01:13:57s. Time for last 1,000,000: 21s. Last read position: chr11:67,507,413 INFO 2026-05-28 22:37:09 SinglePassSamProgram Processed 338,000,000 records. Elapsed time: 01:14:17s. Time for last 1,000,000: 20s. Last read position: chr11:69,295,694 INFO 2026-05-28 22:37:15 SinglePassSamProgram Processed 339,000,000 records. Elapsed time: 01:14:23s. Time for last 1,000,000: 6s. Last read position: chr11:69,643,952 INFO 2026-05-28 22:37:29 SinglePassSamProgram Processed 340,000,000 records. Elapsed time: 01:14:37s. Time for last 1,000,000: 13s. Last read position: chr11:71,444,863 INFO 2026-05-28 22:37:56 SinglePassSamProgram Processed 341,000,000 records. Elapsed time: 01:15:04s. Time for last 1,000,000: 27s. Last read position: chr11:73,966,154 INFO 2026-05-28 22:38:16 SinglePassSamProgram Processed 342,000,000 records. Elapsed time: 01:15:24s. Time for last 1,000,000: 20s. Last read position: chr11:77,667,051 INFO 2026-05-28 22:38:47 SinglePassSamProgram Processed 343,000,000 records. Elapsed time: 01:15:56s. Time for last 1,000,000: 31s. Last read position: chr11:85,664,773 INFO 2026-05-28 22:39:05 SinglePassSamProgram Processed 344,000,000 records. Elapsed time: 01:16:14s. Time for last 1,000,000: 17s. Last read position: chr11:95,817,814 INFO 2026-05-28 22:39:30 SinglePassSamProgram Processed 345,000,000 records. Elapsed time: 01:16:39s. Time for last 1,000,000: 25s. Last read position: chr11:106,009,991 INFO 2026-05-28 22:39:51 SinglePassSamProgram Processed 346,000,000 records. Elapsed time: 01:17:00s. Time for last 1,000,000: 20s. Last read position: chr11:112,085,362 INFO 2026-05-28 22:40:02 SinglePassSamProgram Processed 347,000,000 records. Elapsed time: 01:17:10s. Time for last 1,000,000: 10s. Last read position: chr11:118,472,616 INFO 2026-05-28 22:40:22 SinglePassSamProgram Processed 348,000,000 records. Elapsed time: 01:17:30s. Time for last 1,000,000: 19s. Last read position: chr11:119,049,555 INFO 2026-05-28 22:40:43 SinglePassSamProgram Processed 349,000,000 records. Elapsed time: 01:17:51s. Time for last 1,000,000: 21s. Last read position: chr11:123,058,810 INFO 2026-05-28 22:41:06 SinglePassSamProgram Processed 350,000,000 records. Elapsed time: 01:18:14s. Time for last 1,000,000: 22s. Last read position: chr11:126,277,592 INFO 2026-05-28 22:41:23 SinglePassSamProgram Processed 351,000,000 records. Elapsed time: 01:18:32s. Time for last 1,000,000: 17s. Last read position: chr12:15,105 INFO 2026-05-28 22:41:50 SinglePassSamProgram Processed 352,000,000 records. Elapsed time: 01:18:58s. Time for last 1,000,000: 26s. Last read position: chr12:2,866,423 INFO 2026-05-28 22:42:03 SinglePassSamProgram Processed 353,000,000 records. Elapsed time: 01:19:12s. Time for last 1,000,000: 13s. Last read position: chr12:6,582,205 INFO 2026-05-28 22:42:53 SinglePassSamProgram Processed 354,000,000 records. Elapsed time: 01:20:01s. Time for last 1,000,000: 49s. Last read position: chr12:6,919,759 INFO 2026-05-28 22:43:07 SinglePassSamProgram Processed 355,000,000 records. Elapsed time: 01:20:15s. Time for last 1,000,000: 14s. Last read position: chr12:9,312,277 INFO 2026-05-28 22:43:20 SinglePassSamProgram Processed 356,000,000 records. Elapsed time: 01:20:29s. Time for last 1,000,000: 13s. Last read position: chr12:14,438,128 INFO 2026-05-28 22:43:37 SinglePassSamProgram Processed 357,000,000 records. Elapsed time: 01:20:46s. Time for last 1,000,000: 16s. Last read position: chr12:24,894,426 INFO 2026-05-28 22:43:55 SinglePassSamProgram Processed 358,000,000 records. Elapsed time: 01:21:03s. Time for last 1,000,000: 17s. Last read position: chr12:42,313,101 INFO 2026-05-28 22:44:15 SinglePassSamProgram Processed 359,000,000 records. Elapsed time: 01:21:24s. Time for last 1,000,000: 20s. Last read position: chr12:44,817,186 INFO 2026-05-28 22:44:38 SinglePassSamProgram Processed 360,000,000 records. Elapsed time: 01:21:46s. Time for last 1,000,000: 22s. Last read position: chr12:47,965,978 INFO 2026-05-28 22:44:57 SinglePassSamProgram Processed 361,000,000 records. Elapsed time: 01:22:06s. Time for last 1,000,000: 19s. Last read position: chr12:49,050,041 INFO 2026-05-28 22:45:07 SinglePassSamProgram Processed 362,000,000 records. Elapsed time: 01:22:15s. Time for last 1,000,000: 9s. Last read position: chr12:49,185,470 INFO 2026-05-28 22:45:23 SinglePassSamProgram Processed 363,000,000 records. Elapsed time: 01:22:31s. Time for last 1,000,000: 15s. Last read position: chr12:49,992,284 INFO 2026-05-28 22:45:41 SinglePassSamProgram Processed 364,000,000 records. Elapsed time: 01:22:49s. Time for last 1,000,000: 17s. Last read position: chr12:53,038,375 INFO 2026-05-28 22:45:56 SinglePassSamProgram Processed 365,000,000 records. Elapsed time: 01:23:05s. Time for last 1,000,000: 15s. Last read position: chr12:53,467,226 INFO 2026-05-28 22:46:33 SinglePassSamProgram Processed 366,000,000 records. Elapsed time: 01:23:41s. Time for last 1,000,000: 36s. Last read position: chr12:54,283,929 INFO 2026-05-28 22:46:45 SinglePassSamProgram Processed 367,000,000 records. Elapsed time: 01:23:53s. Time for last 1,000,000: 11s. Last read position: chr12:55,748,812 INFO 2026-05-28 22:46:54 SinglePassSamProgram Processed 368,000,000 records. Elapsed time: 01:24:03s. Time for last 1,000,000: 9s. Last read position: chr12:56,252,811 INFO 2026-05-28 22:47:15 SinglePassSamProgram Processed 369,000,000 records. Elapsed time: 01:24:24s. Time for last 1,000,000: 20s. Last read position: chr12:56,663,574 INFO 2026-05-28 22:47:34 SinglePassSamProgram Processed 370,000,000 records. Elapsed time: 01:24:42s. Time for last 1,000,000: 18s. Last read position: chr12:57,099,724 INFO 2026-05-28 22:47:50 SinglePassSamProgram Processed 371,000,000 records. Elapsed time: 01:24:59s. Time for last 1,000,000: 16s. Last read position: chr12:57,471,201 INFO 2026-05-28 22:48:06 SinglePassSamProgram Processed 372,000,000 records. Elapsed time: 01:25:15s. Time for last 1,000,000: 15s. Last read position: chr12:57,768,931 INFO 2026-05-28 22:48:16 SinglePassSamProgram Processed 373,000,000 records. Elapsed time: 01:25:25s. Time for last 1,000,000: 10s. Last read position: chr12:67,657,182 INFO 2026-05-28 22:48:30 SinglePassSamProgram Processed 374,000,000 records. Elapsed time: 01:25:38s. Time for last 1,000,000: 13s. Last read position: chr12:71,785,563 INFO 2026-05-28 22:48:49 SinglePassSamProgram Processed 375,000,000 records. Elapsed time: 01:25:57s. Time for last 1,000,000: 18s. Last read position: chr12:88,096,898 INFO 2026-05-28 22:48:59 SinglePassSamProgram Processed 376,000,000 records. Elapsed time: 01:26:08s. Time for last 1,000,000: 10s. Last read position: chr12:96,247,036 INFO 2026-05-28 22:49:09 SinglePassSamProgram Processed 377,000,000 records. Elapsed time: 01:26:17s. Time for last 1,000,000: 9s. Last read position: chr12:103,932,279 INFO 2026-05-28 22:49:28 SinglePassSamProgram Processed 378,000,000 records. Elapsed time: 01:26:36s. Time for last 1,000,000: 19s. Last read position: chr12:108,678,324 INFO 2026-05-28 22:49:38 SinglePassSamProgram Processed 379,000,000 records. Elapsed time: 01:26:47s. Time for last 1,000,000: 10s. Last read position: chr12:110,730,683 INFO 2026-05-28 22:49:59 SinglePassSamProgram Processed 380,000,000 records. Elapsed time: 01:27:08s. Time for last 1,000,000: 21s. Last read position: chr12:112,406,756 INFO 2026-05-28 22:50:15 SinglePassSamProgram Processed 381,000,000 records. Elapsed time: 01:27:23s. Time for last 1,000,000: 15s. Last read position: chr12:118,020,916 INFO 2026-05-28 22:50:32 SinglePassSamProgram Processed 382,000,000 records. Elapsed time: 01:27:41s. Time for last 1,000,000: 17s. Last read position: chr12:120,462,029 INFO 2026-05-28 22:50:44 SinglePassSamProgram Processed 383,000,000 records. Elapsed time: 01:27:52s. Time for last 1,000,000: 11s. Last read position: chr12:122,127,912 INFO 2026-05-28 22:50:57 SinglePassSamProgram Processed 384,000,000 records. Elapsed time: 01:28:06s. Time for last 1,000,000: 13s. Last read position: chr12:123,533,249 INFO 2026-05-28 22:51:18 SinglePassSamProgram Processed 385,000,000 records. Elapsed time: 01:28:26s. Time for last 1,000,000: 20s. Last read position: chr12:124,912,279 INFO 2026-05-28 22:51:26 SinglePassSamProgram Processed 386,000,000 records. Elapsed time: 01:28:34s. Time for last 1,000,000: 8s. Last read position: chr12:132,062,688 INFO 2026-05-28 22:51:40 SinglePassSamProgram Processed 387,000,000 records. Elapsed time: 01:28:49s. Time for last 1,000,000: 14s. Last read position: chr12:132,754,898 INFO 2026-05-28 22:51:50 SinglePassSamProgram Processed 388,000,000 records. Elapsed time: 01:28:59s. Time for last 1,000,000: 9s. Last read position: chr13:20,842,928 INFO 2026-05-28 22:51:55 SinglePassSamProgram Processed 389,000,000 records. Elapsed time: 01:29:04s. Time for last 1,000,000: 4s. Last read position: chr13:25,171,069 INFO 2026-05-28 22:52:00 SinglePassSamProgram Processed 390,000,000 records. Elapsed time: 01:29:09s. Time for last 1,000,000: 5s. Last read position: chr13:30,657,631 INFO 2026-05-28 22:52:12 SinglePassSamProgram Processed 391,000,000 records. Elapsed time: 01:29:21s. Time for last 1,000,000: 11s. Last read position: chr13:36,879,610 INFO 2026-05-28 22:52:22 SinglePassSamProgram Processed 392,000,000 records. Elapsed time: 01:29:30s. Time for last 1,000,000: 9s. Last read position: chr13:45,151,795 INFO 2026-05-28 22:52:30 SinglePassSamProgram Processed 393,000,000 records. Elapsed time: 01:29:39s. Time for last 1,000,000: 8s. Last read position: chr13:46,359,594 INFO 2026-05-28 22:52:46 SinglePassSamProgram Processed 394,000,000 records. Elapsed time: 01:29:54s. Time for last 1,000,000: 15s. Last read position: chr13:52,455,555 INFO 2026-05-28 22:52:54 SinglePassSamProgram Processed 395,000,000 records. Elapsed time: 01:30:03s. Time for last 1,000,000: 8s. Last read position: chr13:77,046,933 INFO 2026-05-28 22:53:07 SinglePassSamProgram Processed 396,000,000 records. Elapsed time: 01:30:16s. Time for last 1,000,000: 12s. Last read position: chr13:97,990,134 INFO 2026-05-28 22:53:26 SinglePassSamProgram Processed 397,000,000 records. Elapsed time: 01:30:35s. Time for last 1,000,000: 19s. Last read position: chr13:99,982,775 INFO 2026-05-28 22:53:34 SinglePassSamProgram Processed 398,000,000 records. Elapsed time: 01:30:43s. Time for last 1,000,000: 7s. Last read position: chr13:109,784,275 INFO 2026-05-28 22:53:44 SinglePassSamProgram Processed 399,000,000 records. Elapsed time: 01:30:52s. Time for last 1,000,000: 9s. Last read position: chr13:112,068,289 INFO 2026-05-28 22:53:54 SinglePassSamProgram Processed 400,000,000 records. Elapsed time: 01:31:03s. Time for last 1,000,000: 10s. Last read position: chr14:20,996,613 INFO 2026-05-28 22:54:12 SinglePassSamProgram Processed 401,000,000 records. Elapsed time: 01:31:21s. Time for last 1,000,000: 18s. Last read position: chr14:21,489,194 INFO 2026-05-28 22:54:20 SinglePassSamProgram Processed 402,000,000 records. Elapsed time: 01:31:29s. Time for last 1,000,000: 7s. Last read position: chr14:22,928,572 INFO 2026-05-28 22:54:28 SinglePassSamProgram Processed 403,000,000 records. Elapsed time: 01:31:37s. Time for last 1,000,000: 7s. Last read position: chr14:24,094,401 INFO 2026-05-28 22:54:43 SinglePassSamProgram Processed 404,000,000 records. Elapsed time: 01:31:52s. Time for last 1,000,000: 14s. Last read position: chr14:30,649,557 INFO 2026-05-28 22:55:01 SinglePassSamProgram Processed 405,000,000 records. Elapsed time: 01:32:09s. Time for last 1,000,000: 17s. Last read position: chr14:35,402,046 INFO 2026-05-28 22:55:08 SinglePassSamProgram Processed 406,000,000 records. Elapsed time: 01:32:17s. Time for last 1,000,000: 7s. Last read position: chr14:49,586,670 INFO 2026-05-28 22:55:12 SinglePassSamProgram Processed 407,000,000 records. Elapsed time: 01:32:20s. Time for last 1,000,000: 3s. Last read position: chr14:50,323,942 INFO 2026-05-28 22:55:21 SinglePassSamProgram Processed 408,000,000 records. Elapsed time: 01:32:30s. Time for last 1,000,000: 9s. Last read position: chr14:55,351,029 INFO 2026-05-28 22:55:36 SinglePassSamProgram Processed 409,000,000 records. Elapsed time: 01:32:45s. Time for last 1,000,000: 15s. Last read position: chr14:60,734,834 INFO 2026-05-28 22:56:23 SinglePassSamProgram Processed 410,000,000 records. Elapsed time: 01:33:32s. Time for last 1,000,000: 46s. Last read position: chr14:64,454,800 INFO 2026-05-28 22:56:36 SinglePassSamProgram Processed 411,000,000 records. Elapsed time: 01:33:45s. Time for last 1,000,000: 13s. Last read position: chr14:69,387,032 INFO 2026-05-28 22:56:48 SinglePassSamProgram Processed 412,000,000 records. Elapsed time: 01:33:56s. Time for last 1,000,000: 11s. Last read position: chr14:73,729,947 INFO 2026-05-28 22:56:58 SinglePassSamProgram Processed 413,000,000 records. Elapsed time: 01:34:06s. Time for last 1,000,000: 10s. Last read position: chr14:77,025,966 INFO 2026-05-28 22:57:06 SinglePassSamProgram Processed 414,000,000 records. Elapsed time: 01:34:15s. Time for last 1,000,000: 8s. Last read position: chr14:90,397,108 INFO 2026-05-28 22:57:15 SinglePassSamProgram Processed 415,000,000 records. Elapsed time: 01:34:23s. Time for last 1,000,000: 8s. Last read position: chr14:95,108,008 INFO 2026-05-28 22:57:31 SinglePassSamProgram Processed 416,000,000 records. Elapsed time: 01:34:39s. Time for last 1,000,000: 15s. Last read position: chr14:99,517,147 INFO 2026-05-28 22:58:50 SinglePassSamProgram Processed 417,000,000 records. Elapsed time: 01:35:58s. Time for last 1,000,000: 79s. Last read position: chr14:102,017,432 INFO 2026-05-28 23:00:54 SinglePassSamProgram Processed 418,000,000 records. Elapsed time: 01:38:03s. Time for last 1,000,000: 124s. Last read position: chr14:102,929,467 INFO 2026-05-28 23:01:20 SinglePassSamProgram Processed 419,000,000 records. Elapsed time: 01:38:28s. Time for last 1,000,000: 25s. Last read position: chr14:104,773,066 INFO 2026-05-28 23:01:31 SinglePassSamProgram Processed 420,000,000 records. Elapsed time: 01:38:39s. Time for last 1,000,000: 10s. Last read position: chr15:22,881,897 INFO 2026-05-28 23:02:14 SinglePassSamProgram Processed 421,000,000 records. Elapsed time: 01:39:22s. Time for last 1,000,000: 43s. Last read position: chr15:30,646,183 INFO 2026-05-28 23:02:22 SinglePassSamProgram Processed 422,000,000 records. Elapsed time: 01:39:31s. Time for last 1,000,000: 8s. Last read position: chr15:40,106,038 INFO 2026-05-28 23:02:31 SinglePassSamProgram Processed 423,000,000 records. Elapsed time: 01:39:40s. Time for last 1,000,000: 9s. Last read position: chr15:41,567,358 INFO 2026-05-28 23:02:44 SinglePassSamProgram Processed 424,000,000 records. Elapsed time: 01:39:52s. Time for last 1,000,000: 12s. Last read position: chr15:42,686,183 INFO 2026-05-28 23:02:51 SinglePassSamProgram Processed 425,000,000 records. Elapsed time: 01:39:59s. Time for last 1,000,000: 6s. Last read position: chr15:43,527,926 INFO 2026-05-28 23:02:58 SinglePassSamProgram Processed 426,000,000 records. Elapsed time: 01:40:07s. Time for last 1,000,000: 7s. Last read position: chr15:45,043,258 INFO 2026-05-28 23:03:09 SinglePassSamProgram Processed 427,000,000 records. Elapsed time: 01:40:18s. Time for last 1,000,000: 10s. Last read position: chr15:51,499,705 INFO 2026-05-28 23:03:23 SinglePassSamProgram Processed 428,000,000 records. Elapsed time: 01:40:31s. Time for last 1,000,000: 13s. Last read position: chr15:57,232,403 INFO 2026-05-28 23:03:42 SinglePassSamProgram Processed 429,000,000 records. Elapsed time: 01:40:51s. Time for last 1,000,000: 19s. Last read position: chr15:60,447,924 INFO 2026-05-28 23:03:55 SinglePassSamProgram Processed 430,000,000 records. Elapsed time: 01:41:04s. Time for last 1,000,000: 12s. Last read position: chr15:65,095,178 INFO 2026-05-28 23:04:04 SinglePassSamProgram Processed 431,000,000 records. Elapsed time: 01:41:13s. Time for last 1,000,000: 8s. Last read position: chr15:68,776,699 INFO 2026-05-28 23:04:17 SinglePassSamProgram Processed 432,000,000 records. Elapsed time: 01:41:26s. Time for last 1,000,000: 13s. Last read position: chr15:72,265,119 INFO 2026-05-28 23:04:29 SinglePassSamProgram Processed 433,000,000 records. Elapsed time: 01:41:37s. Time for last 1,000,000: 11s. Last read position: chr15:74,854,104 INFO 2026-05-28 23:04:40 SinglePassSamProgram Processed 434,000,000 records. Elapsed time: 01:41:48s. Time for last 1,000,000: 10s. Last read position: chr15:76,949,104 INFO 2026-05-28 23:04:49 SinglePassSamProgram Processed 435,000,000 records. Elapsed time: 01:41:57s. Time for last 1,000,000: 9s. Last read position: chr15:81,002,481 INFO 2026-05-28 23:04:58 SinglePassSamProgram Processed 436,000,000 records. Elapsed time: 01:42:06s. Time for last 1,000,000: 8s. Last read position: chr15:86,664,673 INFO 2026-05-28 23:05:11 SinglePassSamProgram Processed 437,000,000 records. Elapsed time: 01:42:19s. Time for last 1,000,000: 12s. Last read position: chr15:90,473,773 INFO 2026-05-28 23:05:23 SinglePassSamProgram Processed 438,000,000 records. Elapsed time: 01:42:32s. Time for last 1,000,000: 12s. Last read position: chr15:96,337,399 INFO 2026-05-28 23:05:31 SinglePassSamProgram Processed 439,000,000 records. Elapsed time: 01:42:40s. Time for last 1,000,000: 8s. Last read position: chr16:399,387 INFO 2026-05-28 23:05:45 SinglePassSamProgram Processed 440,000,000 records. Elapsed time: 01:42:54s. Time for last 1,000,000: 14s. Last read position: chr16:870,740 INFO 2026-05-28 23:06:01 SinglePassSamProgram Processed 441,000,000 records. Elapsed time: 01:43:09s. Time for last 1,000,000: 15s. Last read position: chr16:1,760,468 INFO 2026-05-28 23:06:25 SinglePassSamProgram Processed 442,000,000 records. Elapsed time: 01:43:34s. Time for last 1,000,000: 24s. Last read position: chr16:2,091,866 INFO 2026-05-28 23:06:41 SinglePassSamProgram Processed 443,000,000 records. Elapsed time: 01:43:50s. Time for last 1,000,000: 15s. Last read position: chr16:2,519,277 INFO 2026-05-28 23:06:54 SinglePassSamProgram Processed 444,000,000 records. Elapsed time: 01:44:02s. Time for last 1,000,000: 12s. Last read position: chr16:2,770,370 INFO 2026-05-28 23:07:04 SinglePassSamProgram Processed 445,000,000 records. Elapsed time: 01:44:13s. Time for last 1,000,000: 10s. Last read position: chr16:3,751,745 INFO 2026-05-28 23:07:15 SinglePassSamProgram Processed 446,000,000 records. Elapsed time: 01:44:24s. Time for last 1,000,000: 10s. Last read position: chr16:8,855,072 INFO 2026-05-28 23:07:26 SinglePassSamProgram Processed 447,000,000 records. Elapsed time: 01:44:35s. Time for last 1,000,000: 11s. Last read position: chr16:14,218,859 INFO 2026-05-28 23:07:35 SinglePassSamProgram Processed 448,000,000 records. Elapsed time: 01:44:44s. Time for last 1,000,000: 8s. Last read position: chr16:15,040,036 INFO 2026-05-28 23:07:46 SinglePassSamProgram Processed 449,000,000 records. Elapsed time: 01:44:55s. Time for last 1,000,000: 10s. Last read position: chr16:16,325,449 INFO 2026-05-28 23:07:48 SinglePassSamProgram Processed 450,000,000 records. Elapsed time: 01:44:57s. Time for last 1,000,000: 2s. Last read position: chr16:18,358,284 INFO 2026-05-28 23:07:56 SinglePassSamProgram Processed 451,000,000 records. Elapsed time: 01:45:05s. Time for last 1,000,000: 7s. Last read position: chr16:19,503,485 INFO 2026-05-28 23:08:02 SinglePassSamProgram Processed 452,000,000 records. Elapsed time: 01:45:10s. Time for last 1,000,000: 5s. Last read position: chr16:21,835,772 INFO 2026-05-28 23:08:07 SinglePassSamProgram Processed 453,000,000 records. Elapsed time: 01:45:15s. Time for last 1,000,000: 5s. Last read position: chr16:22,534,141 INFO 2026-05-28 23:08:12 SinglePassSamProgram Processed 454,000,000 records. Elapsed time: 01:45:21s. Time for last 1,000,000: 5s. Last read position: chr16:24,361,530 INFO 2026-05-28 23:08:22 SinglePassSamProgram Processed 455,000,000 records. Elapsed time: 01:45:30s. Time for last 1,000,000: 9s. Last read position: chr16:28,146,106 INFO 2026-05-28 23:08:32 SinglePassSamProgram Processed 456,000,000 records. Elapsed time: 01:45:40s. Time for last 1,000,000: 10s. Last read position: chr16:28,834,093 INFO 2026-05-28 23:08:41 SinglePassSamProgram Processed 457,000,000 records. Elapsed time: 01:45:49s. Time for last 1,000,000: 8s. Last read position: chr16:29,485,789 INFO 2026-05-28 23:08:47 SinglePassSamProgram Processed 458,000,000 records. Elapsed time: 01:45:56s. Time for last 1,000,000: 6s. Last read position: chr16:30,001,473 INFO 2026-05-28 23:08:55 SinglePassSamProgram Processed 459,000,000 records. Elapsed time: 01:46:03s. Time for last 1,000,000: 7s. Last read position: chr16:30,408,089 INFO 2026-05-28 23:09:03 SinglePassSamProgram Processed 460,000,000 records. Elapsed time: 01:46:11s. Time for last 1,000,000: 7s. Last read position: chr16:30,782,623 INFO 2026-05-28 23:09:08 SinglePassSamProgram Processed 461,000,000 records. Elapsed time: 01:46:16s. Time for last 1,000,000: 5s. Last read position: chr16:31,183,993 INFO 2026-05-28 23:09:18 SinglePassSamProgram Processed 462,000,000 records. Elapsed time: 01:46:27s. Time for last 1,000,000: 10s. Last read position: chr16:31,190,387 INFO 2026-05-28 23:09:28 SinglePassSamProgram Processed 463,000,000 records. Elapsed time: 01:46:37s. Time for last 1,000,000: 10s. Last read position: chr16:48,561,057 INFO 2026-05-28 23:09:38 SinglePassSamProgram Processed 464,000,000 records. Elapsed time: 01:46:47s. Time for last 1,000,000: 10s. Last read position: chr16:55,810,519 INFO 2026-05-28 23:09:48 SinglePassSamProgram Processed 465,000,000 records. Elapsed time: 01:46:57s. Time for last 1,000,000: 10s. Last read position: chr16:57,769,829 INFO 2026-05-28 23:10:04 SinglePassSamProgram Processed 466,000,000 records. Elapsed time: 01:47:12s. Time for last 1,000,000: 15s. Last read position: chr16:66,808,565 INFO 2026-05-28 23:10:15 SinglePassSamProgram Processed 467,000,000 records. Elapsed time: 01:47:24s. Time for last 1,000,000: 11s. Last read position: chr16:67,870,829 INFO 2026-05-28 23:10:25 SinglePassSamProgram Processed 468,000,000 records. Elapsed time: 01:47:34s. Time for last 1,000,000: 9s. Last read position: chr16:69,462,490 INFO 2026-05-28 23:10:46 SinglePassSamProgram Processed 469,000,000 records. Elapsed time: 01:47:54s. Time for last 1,000,000: 20s. Last read position: chr16:70,565,385 INFO 2026-05-28 23:10:54 SinglePassSamProgram Processed 470,000,000 records. Elapsed time: 01:48:03s. Time for last 1,000,000: 8s. Last read position: chr16:74,406,653 INFO 2026-05-28 23:11:07 SinglePassSamProgram Processed 471,000,000 records. Elapsed time: 01:48:16s. Time for last 1,000,000: 13s. Last read position: chr16:75,504,744 INFO 2026-05-28 23:11:16 SinglePassSamProgram Processed 472,000,000 records. Elapsed time: 01:48:24s. Time for last 1,000,000: 8s. Last read position: chr16:84,759,457 INFO 2026-05-28 23:11:22 SinglePassSamProgram Processed 473,000,000 records. Elapsed time: 01:48:31s. Time for last 1,000,000: 6s. Last read position: chr16:88,652,508 INFO 2026-05-28 23:11:32 SinglePassSamProgram Processed 474,000,000 records. Elapsed time: 01:48:41s. Time for last 1,000,000: 9s. Last read position: chr16:89,283,632 INFO 2026-05-28 23:11:52 SinglePassSamProgram Processed 475,000,000 records. Elapsed time: 01:49:01s. Time for last 1,000,000: 20s. Last read position: chr16:89,814,579 INFO 2026-05-28 23:12:07 SinglePassSamProgram Processed 476,000,000 records. Elapsed time: 01:49:15s. Time for last 1,000,000: 14s. Last read position: chr17:1,345,438 INFO 2026-05-28 23:12:14 SinglePassSamProgram Processed 477,000,000 records. Elapsed time: 01:49:23s. Time for last 1,000,000: 7s. Last read position: chr17:1,651,263 INFO 2026-05-28 23:12:25 SinglePassSamProgram Processed 478,000,000 records. Elapsed time: 01:49:34s. Time for last 1,000,000: 10s. Last read position: chr17:2,375,657 INFO 2026-05-28 23:12:36 SinglePassSamProgram Processed 479,000,000 records. Elapsed time: 01:49:44s. Time for last 1,000,000: 10s. Last read position: chr17:4,672,582 INFO 2026-05-28 23:12:45 SinglePassSamProgram Processed 480,000,000 records. Elapsed time: 01:49:54s. Time for last 1,000,000: 9s. Last read position: chr17:5,433,021 INFO 2026-05-28 23:12:57 SinglePassSamProgram Processed 481,000,000 records. Elapsed time: 01:50:05s. Time for last 1,000,000: 11s. Last read position: chr17:7,307,692 INFO 2026-05-28 23:13:05 SinglePassSamProgram Processed 482,000,000 records. Elapsed time: 01:50:14s. Time for last 1,000,000: 8s. Last read position: chr17:7,511,945 INFO 2026-05-28 23:13:19 SinglePassSamProgram Processed 483,000,000 records. Elapsed time: 01:50:28s. Time for last 1,000,000: 14s. Last read position: chr17:7,688,995 INFO 2026-05-28 23:13:33 SinglePassSamProgram Processed 484,000,000 records. Elapsed time: 01:50:42s. Time for last 1,000,000: 14s. Last read position: chr17:8,205,363 INFO 2026-05-28 23:13:45 SinglePassSamProgram Processed 485,000,000 records. Elapsed time: 01:50:53s. Time for last 1,000,000: 11s. Last read position: chr17:15,700,303 INFO 2026-05-28 23:13:59 SinglePassSamProgram Processed 486,000,000 records. Elapsed time: 01:51:08s. Time for last 1,000,000: 14s. Last read position: chr17:17,264,934 INFO 2026-05-28 23:14:10 SinglePassSamProgram Processed 487,000,000 records. Elapsed time: 01:51:18s. Time for last 1,000,000: 10s. Last read position: chr17:18,671,766 INFO 2026-05-28 23:14:19 SinglePassSamProgram Processed 488,000,000 records. Elapsed time: 01:51:28s. Time for last 1,000,000: 9s. Last read position: chr17:28,350,766 INFO 2026-05-28 23:14:31 SinglePassSamProgram Processed 489,000,000 records. Elapsed time: 01:51:40s. Time for last 1,000,000: 11s. Last read position: chr17:28,749,195 INFO 2026-05-28 23:14:41 SinglePassSamProgram Processed 490,000,000 records. Elapsed time: 01:51:50s. Time for last 1,000,000: 10s. Last read position: chr17:30,286,859 INFO 2026-05-28 23:14:52 SinglePassSamProgram Processed 491,000,000 records. Elapsed time: 01:52:01s. Time for last 1,000,000: 10s. Last read position: chr17:35,442,077 INFO 2026-05-28 23:15:04 SinglePassSamProgram Processed 492,000,000 records. Elapsed time: 01:52:13s. Time for last 1,000,000: 12s. Last read position: chr17:38,850,097 INFO 2026-05-28 23:15:13 SinglePassSamProgram Processed 493,000,000 records. Elapsed time: 01:52:22s. Time for last 1,000,000: 9s. Last read position: chr17:41,688,896 INFO 2026-05-28 23:15:30 SinglePassSamProgram Processed 494,000,000 records. Elapsed time: 01:52:38s. Time for last 1,000,000: 16s. Last read position: chr17:43,110,491 INFO 2026-05-28 23:15:40 SinglePassSamProgram Processed 495,000,000 records. Elapsed time: 01:52:49s. Time for last 1,000,000: 10s. Last read position: chr17:45,518,223 INFO 2026-05-28 23:15:52 SinglePassSamProgram Processed 496,000,000 records. Elapsed time: 01:53:01s. Time for last 1,000,000: 12s. Last read position: chr17:48,075,005 INFO 2026-05-28 23:15:58 SinglePassSamProgram Processed 497,000,000 records. Elapsed time: 01:53:07s. Time for last 1,000,000: 5s. Last read position: chr17:49,607,874 INFO 2026-05-28 23:16:18 SinglePassSamProgram Processed 498,000,000 records. Elapsed time: 01:53:26s. Time for last 1,000,000: 19s. Last read position: chr17:51,195,222 INFO 2026-05-28 23:16:26 SinglePassSamProgram Processed 499,000,000 records. Elapsed time: 01:53:35s. Time for last 1,000,000: 8s. Last read position: chr17:59,267,112 INFO 2026-05-28 23:16:37 SinglePassSamProgram Processed 500,000,000 records. Elapsed time: 01:53:46s. Time for last 1,000,000: 10s. Last read position: chr17:59,682,759 INFO 2026-05-28 23:16:52 SinglePassSamProgram Processed 501,000,000 records. Elapsed time: 01:54:00s. Time for last 1,000,000: 14s. Last read position: chr17:62,426,396 INFO 2026-05-28 23:17:09 SinglePassSamProgram Processed 502,000,000 records. Elapsed time: 01:54:17s. Time for last 1,000,000: 17s. Last read position: chr17:64,506,141 INFO 2026-05-28 23:17:22 SinglePassSamProgram Processed 503,000,000 records. Elapsed time: 01:54:31s. Time for last 1,000,000: 13s. Last read position: chr17:68,512,468 INFO 2026-05-28 23:17:32 SinglePassSamProgram Processed 504,000,000 records. Elapsed time: 01:54:41s. Time for last 1,000,000: 9s. Last read position: chr17:75,238,665 INFO 2026-05-28 23:17:45 SinglePassSamProgram Processed 505,000,000 records. Elapsed time: 01:54:53s. Time for last 1,000,000: 12s. Last read position: chr17:76,293,502 INFO 2026-05-28 23:17:56 SinglePassSamProgram Processed 506,000,000 records. Elapsed time: 01:55:04s. Time for last 1,000,000: 11s. Last read position: chr17:78,820,991 INFO 2026-05-28 23:18:08 SinglePassSamProgram Processed 507,000,000 records. Elapsed time: 01:55:16s. Time for last 1,000,000: 11s. Last read position: chr17:81,231,863 INFO 2026-05-28 23:18:22 SinglePassSamProgram Processed 508,000,000 records. Elapsed time: 01:55:31s. Time for last 1,000,000: 14s. Last read position: chr17:81,696,969 INFO 2026-05-28 23:18:42 SinglePassSamProgram Processed 509,000,000 records. Elapsed time: 01:55:50s. Time for last 1,000,000: 19s. Last read position: chr17:82,051,952 INFO 2026-05-28 23:18:54 SinglePassSamProgram Processed 510,000,000 records. Elapsed time: 01:56:02s. Time for last 1,000,000: 11s. Last read position: chr17:82,443,448 INFO 2026-05-28 23:19:06 SinglePassSamProgram Processed 511,000,000 records. Elapsed time: 01:56:15s. Time for last 1,000,000: 12s. Last read position: chr18:2,728,462 INFO 2026-05-28 23:19:15 SinglePassSamProgram Processed 512,000,000 records. Elapsed time: 01:56:24s. Time for last 1,000,000: 9s. Last read position: chr18:10,471,932 INFO 2026-05-28 23:19:25 SinglePassSamProgram Processed 513,000,000 records. Elapsed time: 01:56:33s. Time for last 1,000,000: 9s. Last read position: chr18:21,703,648 INFO 2026-05-28 23:19:35 SinglePassSamProgram Processed 514,000,000 records. Elapsed time: 01:56:44s. Time for last 1,000,000: 10s. Last read position: chr18:36,027,266 INFO 2026-05-28 23:19:48 SinglePassSamProgram Processed 515,000,000 records. Elapsed time: 01:56:56s. Time for last 1,000,000: 12s. Last read position: chr18:47,075,347 INFO 2026-05-28 23:19:59 SinglePassSamProgram Processed 516,000,000 records. Elapsed time: 01:57:08s. Time for last 1,000,000: 11s. Last read position: chr18:53,416,140 INFO 2026-05-28 23:20:22 SinglePassSamProgram Processed 517,000,000 records. Elapsed time: 01:57:30s. Time for last 1,000,000: 22s. Last read position: chr18:59,227,224 INFO 2026-05-28 23:20:34 SinglePassSamProgram Processed 518,000,000 records. Elapsed time: 01:57:42s. Time for last 1,000,000: 12s. Last read position: chr18:70,324,880 INFO 2026-05-28 23:20:41 SinglePassSamProgram Processed 519,000,000 records. Elapsed time: 01:57:49s. Time for last 1,000,000: 6s. Last read position: chr19:581,509 INFO 2026-05-28 23:20:52 SinglePassSamProgram Processed 520,000,000 records. Elapsed time: 01:58:01s. Time for last 1,000,000: 11s. Last read position: chr19:1,010,487 INFO 2026-05-28 23:21:03 SinglePassSamProgram Processed 521,000,000 records. Elapsed time: 01:58:11s. Time for last 1,000,000: 10s. Last read position: chr19:1,278,851 INFO 2026-05-28 23:21:11 SinglePassSamProgram Processed 522,000,000 records. Elapsed time: 01:58:20s. Time for last 1,000,000: 8s. Last read position: chr19:1,625,619 INFO 2026-05-28 23:21:21 SinglePassSamProgram Processed 523,000,000 records. Elapsed time: 01:58:30s. Time for last 1,000,000: 9s. Last read position: chr19:2,230,188 INFO 2026-05-28 23:21:28 SinglePassSamProgram Processed 524,000,000 records. Elapsed time: 01:58:36s. Time for last 1,000,000: 6s. Last read position: chr19:3,056,342 INFO 2026-05-28 23:21:35 SinglePassSamProgram Processed 525,000,000 records. Elapsed time: 01:58:43s. Time for last 1,000,000: 7s. Last read position: chr19:4,208,784 INFO 2026-05-28 23:21:41 SinglePassSamProgram Processed 526,000,000 records. Elapsed time: 01:58:50s. Time for last 1,000,000: 6s. Last read position: chr19:4,954,801 INFO 2026-05-28 23:21:57 SinglePassSamProgram Processed 527,000,000 records. Elapsed time: 01:59:05s. Time for last 1,000,000: 15s. Last read position: chr19:5,649,474 INFO 2026-05-28 23:22:07 SinglePassSamProgram Processed 528,000,000 records. Elapsed time: 01:59:15s. Time for last 1,000,000: 9s. Last read position: chr19:6,417,034 INFO 2026-05-28 23:22:17 SinglePassSamProgram Processed 529,000,000 records. Elapsed time: 01:59:25s. Time for last 1,000,000: 9s. Last read position: chr19:7,905,037 INFO 2026-05-28 23:22:24 SinglePassSamProgram Processed 530,000,000 records. Elapsed time: 01:59:33s. Time for last 1,000,000: 7s. Last read position: chr19:9,838,490 INFO 2026-05-28 23:22:59 SinglePassSamProgram Processed 531,000,000 records. Elapsed time: 02:00:08s. Time for last 1,000,000: 34s. Last read position: chr19:10,354,553 INFO 2026-05-28 23:23:14 SinglePassSamProgram Processed 532,000,000 records. Elapsed time: 02:00:22s. Time for last 1,000,000: 14s. Last read position: chr19:10,920,554 INFO 2026-05-28 23:24:14 SinglePassSamProgram Processed 533,000,000 records. Elapsed time: 02:01:22s. Time for last 1,000,000: 60s. Last read position: chr19:11,436,162 INFO 2026-05-28 23:24:24 SinglePassSamProgram Processed 534,000,000 records. Elapsed time: 02:01:32s. Time for last 1,000,000: 9s. Last read position: chr19:12,800,188 INFO 2026-05-28 23:24:34 SinglePassSamProgram Processed 535,000,000 records. Elapsed time: 02:01:42s. Time for last 1,000,000: 9s. Last read position: chr19:13,762,298 INFO 2026-05-28 23:24:41 SinglePassSamProgram Processed 536,000,000 records. Elapsed time: 02:01:50s. Time for last 1,000,000: 7s. Last read position: chr19:14,478,450 INFO 2026-05-28 23:24:50 SinglePassSamProgram Processed 537,000,000 records. Elapsed time: 02:01:58s. Time for last 1,000,000: 8s. Last read position: chr19:15,243,452 INFO 2026-05-28 23:25:02 SinglePassSamProgram Processed 538,000,000 records. Elapsed time: 02:02:11s. Time for last 1,000,000: 12s. Last read position: chr19:15,425,251 INFO 2026-05-28 23:25:14 SinglePassSamProgram Processed 539,000,000 records. Elapsed time: 02:02:22s. Time for last 1,000,000: 11s. Last read position: chr19:17,211,862 INFO 2026-05-28 23:25:21 SinglePassSamProgram Processed 540,000,000 records. Elapsed time: 02:02:30s. Time for last 1,000,000: 7s. Last read position: chr19:18,168,512 INFO 2026-05-28 23:25:29 SinglePassSamProgram Processed 541,000,000 records. Elapsed time: 02:02:38s. Time for last 1,000,000: 7s. Last read position: chr19:18,742,909 INFO 2026-05-28 23:25:38 SinglePassSamProgram Processed 542,000,000 records. Elapsed time: 02:02:47s. Time for last 1,000,000: 9s. Last read position: chr19:19,502,025 INFO 2026-05-28 23:25:44 SinglePassSamProgram Processed 543,000,000 records. Elapsed time: 02:02:53s. Time for last 1,000,000: 6s. Last read position: chr19:32,904,712 INFO 2026-05-28 23:25:54 SinglePassSamProgram Processed 544,000,000 records. Elapsed time: 02:03:02s. Time for last 1,000,000: 9s. Last read position: chr19:35,542,886 INFO 2026-05-28 23:26:12 SinglePassSamProgram Processed 545,000,000 records. Elapsed time: 02:03:20s. Time for last 1,000,000: 18s. Last read position: chr19:36,141,135 INFO 2026-05-28 23:26:20 SinglePassSamProgram Processed 546,000,000 records. Elapsed time: 02:03:29s. Time for last 1,000,000: 8s. Last read position: chr19:38,844,040 INFO 2026-05-28 23:26:30 SinglePassSamProgram Processed 547,000,000 records. Elapsed time: 02:03:38s. Time for last 1,000,000: 9s. Last read position: chr19:39,471,422 INFO 2026-05-28 23:26:41 SinglePassSamProgram Processed 548,000,000 records. Elapsed time: 02:03:49s. Time for last 1,000,000: 11s. Last read position: chr19:40,256,952 INFO 2026-05-28 23:26:58 SinglePassSamProgram Processed 549,000,000 records. Elapsed time: 02:04:06s. Time for last 1,000,000: 16s. Last read position: chr19:41,292,476 INFO 2026-05-28 23:27:10 SinglePassSamProgram Processed 550,000,000 records. Elapsed time: 02:04:19s. Time for last 1,000,000: 12s. Last read position: chr19:42,224,398 INFO 2026-05-28 23:27:18 SinglePassSamProgram Processed 551,000,000 records. Elapsed time: 02:04:26s. Time for last 1,000,000: 7s. Last read position: chr19:42,293,738 INFO 2026-05-28 23:27:26 SinglePassSamProgram Processed 552,000,000 records. Elapsed time: 02:04:34s. Time for last 1,000,000: 8s. Last read position: chr19:44,882,332 INFO 2026-05-28 23:27:34 SinglePassSamProgram Processed 553,000,000 records. Elapsed time: 02:04:43s. Time for last 1,000,000: 8s. Last read position: chr19:45,785,810 INFO 2026-05-28 23:27:43 SinglePassSamProgram Processed 554,000,000 records. Elapsed time: 02:04:52s. Time for last 1,000,000: 8s. Last read position: chr19:46,919,139 INFO 2026-05-28 23:27:51 SinglePassSamProgram Processed 555,000,000 records. Elapsed time: 02:05:00s. Time for last 1,000,000: 8s. Last read position: chr19:48,153,872 INFO 2026-05-28 23:28:00 SinglePassSamProgram Processed 556,000,000 records. Elapsed time: 02:05:09s. Time for last 1,000,000: 9s. Last read position: chr19:48,965,846 INFO 2026-05-28 23:28:11 SinglePassSamProgram Processed 557,000,000 records. Elapsed time: 02:05:20s. Time for last 1,000,000: 10s. Last read position: chr19:49,497,916 INFO 2026-05-28 23:28:17 SinglePassSamProgram Processed 558,000,000 records. Elapsed time: 02:05:25s. Time for last 1,000,000: 5s. Last read position: chr19:49,658,241 INFO 2026-05-28 23:28:31 SinglePassSamProgram Processed 559,000,000 records. Elapsed time: 02:05:39s. Time for last 1,000,000: 13s. Last read position: chr19:49,884,465 INFO 2026-05-28 23:28:38 SinglePassSamProgram Processed 560,000,000 records. Elapsed time: 02:05:47s. Time for last 1,000,000: 7s. Last read position: chr19:50,667,611 INFO 2026-05-28 23:28:45 SinglePassSamProgram Processed 561,000,000 records. Elapsed time: 02:05:54s. Time for last 1,000,000: 7s. Last read position: chr19:54,152,942 INFO 2026-05-28 23:28:53 SinglePassSamProgram Processed 562,000,000 records. Elapsed time: 02:06:02s. Time for last 1,000,000: 7s. Last read position: chr19:55,388,244 INFO 2026-05-28 23:28:58 SinglePassSamProgram Processed 563,000,000 records. Elapsed time: 02:06:06s. Time for last 1,000,000: 4s. Last read position: chr19:56,313,293 INFO 2026-05-28 23:29:15 SinglePassSamProgram Processed 564,000,000 records. Elapsed time: 02:06:23s. Time for last 1,000,000: 17s. Last read position: chr19:57,682,127 INFO 2026-05-28 23:29:20 SinglePassSamProgram Processed 565,000,000 records. Elapsed time: 02:06:29s. Time for last 1,000,000: 5s. Last read position: chr19:58,548,389 INFO 2026-05-28 23:29:33 SinglePassSamProgram Processed 566,000,000 records. Elapsed time: 02:06:41s. Time for last 1,000,000: 12s. Last read position: chr20:1,392,833 INFO 2026-05-28 23:29:39 SinglePassSamProgram Processed 567,000,000 records. Elapsed time: 02:06:48s. Time for last 1,000,000: 6s. Last read position: chr20:3,785,392 INFO 2026-05-28 23:29:45 SinglePassSamProgram Processed 568,000,000 records. Elapsed time: 02:06:53s. Time for last 1,000,000: 5s. Last read position: chr20:10,639,525 INFO 2026-05-28 23:29:53 SinglePassSamProgram Processed 569,000,000 records. Elapsed time: 02:07:01s. Time for last 1,000,000: 8s. Last read position: chr20:20,039,730 INFO 2026-05-28 23:30:00 SinglePassSamProgram Processed 570,000,000 records. Elapsed time: 02:07:08s. Time for last 1,000,000: 6s. Last read position: chr20:31,721,846 INFO 2026-05-28 23:30:08 SinglePassSamProgram Processed 571,000,000 records. Elapsed time: 02:07:17s. Time for last 1,000,000: 8s. Last read position: chr20:34,089,872 INFO 2026-05-28 23:30:20 SinglePassSamProgram Processed 572,000,000 records. Elapsed time: 02:07:28s. Time for last 1,000,000: 11s. Last read position: chr20:35,630,892 INFO 2026-05-28 23:30:35 SinglePassSamProgram Processed 573,000,000 records. Elapsed time: 02:07:43s. Time for last 1,000,000: 14s. Last read position: chr20:37,225,693 INFO 2026-05-28 23:30:44 SinglePassSamProgram Processed 574,000,000 records. Elapsed time: 02:07:52s. Time for last 1,000,000: 9s. Last read position: chr20:41,617,047 INFO 2026-05-28 23:30:52 SinglePassSamProgram Processed 575,000,000 records. Elapsed time: 02:08:00s. Time for last 1,000,000: 8s. Last read position: chr20:45,424,239 INFO 2026-05-28 23:31:04 SinglePassSamProgram Processed 576,000,000 records. Elapsed time: 02:08:13s. Time for last 1,000,000: 12s. Last read position: chr20:48,745,086 INFO 2026-05-28 23:31:11 SinglePassSamProgram Processed 577,000,000 records. Elapsed time: 02:08:20s. Time for last 1,000,000: 6s. Last read position: chr20:50,894,315 INFO 2026-05-28 23:31:27 SinglePassSamProgram Processed 578,000,000 records. Elapsed time: 02:08:35s. Time for last 1,000,000: 15s. Last read position: chr20:58,909,963 INFO 2026-05-28 23:31:38 SinglePassSamProgram Processed 579,000,000 records. Elapsed time: 02:08:46s. Time for last 1,000,000: 10s. Last read position: chr20:62,842,075 INFO 2026-05-28 23:31:46 SinglePassSamProgram Processed 580,000,000 records. Elapsed time: 02:08:54s. Time for last 1,000,000: 7s. Last read position: chr20:64,027,030 INFO 2026-05-28 23:31:49 SinglePassSamProgram Processed 581,000,000 records. Elapsed time: 02:08:57s. Time for last 1,000,000: 3s. Last read position: chr21:8,212,292 INFO 2026-05-28 23:31:50 SinglePassSamProgram Processed 582,000,000 records. Elapsed time: 02:08:58s. Time for last 1,000,000: 0s. Last read position: chr21:8,217,180 INFO 2026-05-28 23:31:50 SinglePassSamProgram Processed 583,000,000 records. Elapsed time: 02:08:59s. Time for last 1,000,000: 0s. Last read position: chr21:8,258,915 INFO 2026-05-28 23:31:51 SinglePassSamProgram Processed 584,000,000 records. Elapsed time: 02:09:00s. Time for last 1,000,000: 0s. Last read position: chr21:8,397,737 INFO 2026-05-28 23:31:52 SinglePassSamProgram Processed 585,000,000 records. Elapsed time: 02:09:01s. Time for last 1,000,000: 1s. Last read position: chr21:8,435,857 INFO 2026-05-28 23:31:53 SinglePassSamProgram Processed 586,000,000 records. Elapsed time: 02:09:02s. Time for last 1,000,000: 0s. Last read position: chr21:8,444,078 INFO 2026-05-28 23:31:56 SinglePassSamProgram Processed 587,000,000 records. Elapsed time: 02:09:04s. Time for last 1,000,000: 2s. Last read position: chr21:14,375,677 INFO 2026-05-28 23:32:06 SinglePassSamProgram Processed 588,000,000 records. Elapsed time: 02:09:15s. Time for last 1,000,000: 10s. Last read position: chr21:29,327,034 INFO 2026-05-28 23:32:15 SinglePassSamProgram Processed 589,000,000 records. Elapsed time: 02:09:23s. Time for last 1,000,000: 8s. Last read position: chr21:33,554,087 INFO 2026-05-28 23:32:37 SinglePassSamProgram Processed 590,000,000 records. Elapsed time: 02:09:45s. Time for last 1,000,000: 21s. Last read position: chr21:37,478,225 INFO 2026-05-28 23:32:47 SinglePassSamProgram Processed 591,000,000 records. Elapsed time: 02:09:56s. Time for last 1,000,000: 10s. Last read position: chr21:43,719,303 INFO 2026-05-28 23:32:55 SinglePassSamProgram Processed 592,000,000 records. Elapsed time: 02:10:03s. Time for last 1,000,000: 7s. Last read position: chr21:45,531,928 INFO 2026-05-28 23:33:06 SinglePassSamProgram Processed 593,000,000 records. Elapsed time: 02:10:15s. Time for last 1,000,000: 11s. Last read position: chr22:17,739,415 INFO 2026-05-28 23:33:16 SinglePassSamProgram Processed 594,000,000 records. Elapsed time: 02:10:25s. Time for last 1,000,000: 10s. Last read position: chr22:20,115,675 INFO 2026-05-28 23:33:29 SinglePassSamProgram Processed 595,000,000 records. Elapsed time: 02:10:37s. Time for last 1,000,000: 12s. Last read position: chr22:21,696,733 INFO 2026-05-28 23:33:36 SinglePassSamProgram Processed 596,000,000 records. Elapsed time: 02:10:44s. Time for last 1,000,000: 7s. Last read position: chr22:23,894,866 INFO 2026-05-28 23:33:46 SinglePassSamProgram Processed 597,000,000 records. Elapsed time: 02:10:54s. Time for last 1,000,000: 9s. Last read position: chr22:28,297,696 INFO 2026-05-28 23:34:00 SinglePassSamProgram Processed 598,000,000 records. Elapsed time: 02:11:09s. Time for last 1,000,000: 14s. Last read position: chr22:29,292,595 INFO 2026-05-28 23:34:14 SinglePassSamProgram Processed 599,000,000 records. Elapsed time: 02:11:22s. Time for last 1,000,000: 13s. Last read position: chr22:30,427,345 INFO 2026-05-28 23:34:30 SinglePassSamProgram Processed 600,000,000 records. Elapsed time: 02:11:38s. Time for last 1,000,000: 16s. Last read position: chr22:32,493,159 INFO 2026-05-28 23:34:38 SinglePassSamProgram Processed 601,000,000 records. Elapsed time: 02:11:46s. Time for last 1,000,000: 8s. Last read position: chr22:37,024,388 INFO 2026-05-28 23:34:48 SinglePassSamProgram Processed 602,000,000 records. Elapsed time: 02:11:56s. Time for last 1,000,000: 9s. Last read position: chr22:38,495,816 INFO 2026-05-28 23:34:54 SinglePassSamProgram Processed 603,000,000 records. Elapsed time: 02:12:02s. Time for last 1,000,000: 5s. Last read position: chr22:39,532,409 INFO 2026-05-28 23:35:04 SinglePassSamProgram Processed 604,000,000 records. Elapsed time: 02:12:13s. Time for last 1,000,000: 10s. Last read position: chr22:41,332,218 INFO 2026-05-28 23:35:16 SinglePassSamProgram Processed 605,000,000 records. Elapsed time: 02:12:25s. Time for last 1,000,000: 11s. Last read position: chr22:42,059,869 INFO 2026-05-28 23:35:21 SinglePassSamProgram Processed 606,000,000 records. Elapsed time: 02:12:30s. Time for last 1,000,000: 5s. Last read position: chr22:44,916,453 INFO 2026-05-28 23:35:28 SinglePassSamProgram Processed 607,000,000 records. Elapsed time: 02:12:36s. Time for last 1,000,000: 6s. Last read position: chr22:49,962,947 INFO 2026-05-28 23:35:40 SinglePassSamProgram Processed 608,000,000 records. Elapsed time: 02:12:49s. Time for last 1,000,000: 12s. Last read position: chr22:50,504,892 INFO 2026-05-28 23:35:45 SinglePassSamProgram Processed 609,000,000 records. Elapsed time: 02:12:53s. Time for last 1,000,000: 4s. Last read position: chrX:2,714,428 INFO 2026-05-28 23:35:49 SinglePassSamProgram Processed 610,000,000 records. Elapsed time: 02:12:58s. Time for last 1,000,000: 4s. Last read position: chrX:16,743,825 INFO 2026-05-28 23:35:59 SinglePassSamProgram Processed 611,000,000 records. Elapsed time: 02:13:08s. Time for last 1,000,000: 10s. Last read position: chrX:25,185,816 INFO 2026-05-28 23:36:14 SinglePassSamProgram Processed 612,000,000 records. Elapsed time: 02:13:23s. Time for last 1,000,000: 14s. Last read position: chrX:41,186,538 INFO 2026-05-28 23:36:44 SinglePassSamProgram Processed 613,000,000 records. Elapsed time: 02:13:52s. Time for last 1,000,000: 29s. Last read position: chrX:47,206,394 INFO 2026-05-28 23:36:53 SinglePassSamProgram Processed 614,000,000 records. Elapsed time: 02:14:01s. Time for last 1,000,000: 9s. Last read position: chrX:48,802,752 INFO 2026-05-28 23:37:02 SinglePassSamProgram Processed 615,000,000 records. Elapsed time: 02:14:10s. Time for last 1,000,000: 8s. Last read position: chrX:51,893,713 INFO 2026-05-28 23:37:07 SinglePassSamProgram Processed 616,000,000 records. Elapsed time: 02:14:16s. Time for last 1,000,000: 5s. Last read position: chrX:53,194,629 INFO 2026-05-28 23:37:25 SinglePassSamProgram Processed 617,000,000 records. Elapsed time: 02:14:34s. Time for last 1,000,000: 17s. Last read position: chrX:53,604,634 INFO 2026-05-28 23:37:40 SinglePassSamProgram Processed 618,000,000 records. Elapsed time: 02:14:48s. Time for last 1,000,000: 14s. Last read position: chrX:65,739,011 INFO 2026-05-28 23:37:55 SinglePassSamProgram Processed 619,000,000 records. Elapsed time: 02:15:04s. Time for last 1,000,000: 15s. Last read position: chrX:71,299,985 INFO 2026-05-28 23:38:09 SinglePassSamProgram Processed 620,000,000 records. Elapsed time: 02:15:17s. Time for last 1,000,000: 13s. Last read position: chrX:77,664,645 INFO 2026-05-28 23:38:19 SinglePassSamProgram Processed 621,000,000 records. Elapsed time: 02:15:27s. Time for last 1,000,000: 9s. Last read position: chrX:85,901,084 INFO 2026-05-28 23:38:24 SinglePassSamProgram Processed 622,000,000 records. Elapsed time: 02:15:32s. Time for last 1,000,000: 5s. Last read position: chrX:109,644,079 INFO 2026-05-28 23:38:37 SinglePassSamProgram Processed 623,000,000 records. Elapsed time: 02:15:45s. Time for last 1,000,000: 13s. Last read position: chrX:124,334,276 INFO 2026-05-28 23:38:47 SinglePassSamProgram Processed 624,000,000 records. Elapsed time: 02:15:56s. Time for last 1,000,000: 10s. Last read position: chrX:135,293,825 INFO 2026-05-28 23:38:56 SinglePassSamProgram Processed 625,000,000 records. Elapsed time: 02:16:05s. Time for last 1,000,000: 9s. Last read position: chrX:150,987,182 INFO 2026-05-28 23:39:05 SinglePassSamProgram Processed 626,000,000 records. Elapsed time: 02:16:13s. Time for last 1,000,000: 8s. Last read position: chrX:154,032,278 INFO 2026-05-28 23:39:35 SinglePassSamProgram Processed 627,000,000 records. Elapsed time: 02:16:43s. Time for last 1,000,000: 30s. Last read position: chrX:154,442,534 INFO 2026-05-28 23:39:39 SinglePassSamProgram Processed 628,000,000 records. Elapsed time: 02:16:47s. Time for last 1,000,000: 3s. Last read position: chrM:6,612 INFO 2026-05-28 23:39:40 SinglePassSamProgram Processed 629,000,000 records. Elapsed time: 02:16:49s. Time for last 1,000,000: 1s. Last read position: GL000220.1:107,967 INFO 2026-05-28 23:39:41 SinglePassSamProgram Processed 630,000,000 records. Elapsed time: 02:16:49s. Time for last 1,000,000: 0s. Last read position: GL000220.1:116,263 INFO 2026-05-28 23:39:41 SinglePassSamProgram Processed 631,000,000 records. Elapsed time: 02:16:50s. Time for last 1,000,000: 0s. Last read position: GL000220.1:156,781 INFO 2026-05-28 23:39:42 SinglePassSamProgram Processed 632,000,000 records. Elapsed time: 02:16:51s. Time for last 1,000,000: 0s. Last read position: GL000220.1:160,770 INFO 2026-05-28 23:39:43 SinglePassSamProgram Processed 633,000,000 records. Elapsed time: 02:16:51s. Time for last 1,000,000: 0s. Last read position: KI270733.1:129,930 INFO 2026-05-28 23:39:43 SinglePassSamProgram Processed 634,000,000 records. Elapsed time: 02:16:52s. Time for last 1,000,000: 0s. Last read position: KI270733.1:133,628 INFO 2026-05-28 23:39:44 SinglePassSamProgram Processed 635,000,000 records. Elapsed time: 02:16:53s. Time for last 1,000,000: 0s. Last read position: KI270733.1:174,988 INFO 2026-05-28 23:39:45 SinglePassSamProgram Processed 636,000,000 records. Elapsed time: 02:16:53s. Time for last 1,000,000: 0s. Last read position: KI270733.1:178,706 INFO 2026-05-28 23:39:46 SinglePassSamProgram Processed 637,000,000 records. Elapsed time: 02:16:54s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-05-28 23:39:46 SinglePassSamProgram Processed 638,000,000 records. Elapsed time: 02:16:55s. Time for last 1,000,000: 0s. Last read position: */* INFO 2026-05-28 23:39:47 SinglePassSamProgram Processed 639,000,000 records. Elapsed time: 02:16:55s. Time for last 1,000,000: 0s. Last read position: */* [Thu May 28 23:39:48 GMT 2026] picard.analysis.CollectRnaSeqMetrics done. Elapsed time: 136.99 minutes. Runtime.totalMemory()=3477078016