Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/a1118b890c33ced99567881d245ca2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/a1118b890c33ced99567881d245ca2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/cb78fbfa123976a7e6c1983fa69b5c/BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1_R2.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/cb78fbfa123976a7e6c1983fa69b5c/BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1_R1.fastq.gz
==> STAGING COMPLETE (4 inputs)

ls: *.fail.fastq.gz: No such file or directory
ls: *.merged.fastq.gz: No such file or directory