Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-6ef41cd9-2e18-4687-842c-3f6f49c5643f/e6/b0f48d6d7a697674824d761d17ce05/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/bfb2f6f09f007cadce0d15304259bb/A673_FFPE_RNA_0001_B23LG7FLT4_3.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/d6cd878616aaa848bb8f90b152acdd/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/d6cd878616aaa848bb8f90b152acdd/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/d6e029a0505a48bed2e10f377b433e/A673_FFPE_RNA_0001_B23LG7FLT4_3.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
EWSR1--FLI1
starfusion
arriba
SMURF2P1--SP2
starfusion
arriba
SUPT20H--CHRDL2
starfusion
arriba
CYP7B1--LINC01414
starfusion
arriba
ZNF875--PCSK2
starfusion
ACKR2--PCSK2
starfusion
AC096555.1--PCSK2
starfusion
TLK2--AC240565.1
starfusion
PCDHGA6--PCDHGA8
arriba
PCDHGA6--PCDHGA10
arriba
PCDHGA6--PCDHGC5
arriba
PCDHGA6--PCDHGC4
arriba
PCDHGA6--PCDHGB6
arriba
PCDHGA6--PCDHGB7
arriba
PCDHGA6--PCDHGA12
arriba
PCDHGA6--PCDHGC3
arriba
PCDHGA6--PCDHGA9
arriba
PCDHGA6--PCDHGA11
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba
PCDHA6--PCDHA13
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
SPG7--PLSCR5
arriba
SPG7--AC092957.1
arriba
PCDHA8--PCDHA10
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA11
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHA13
arriba
CCDC169--SOHLH2
arriba
SUCLA2--AL158828.1
arriba
SUCLA2--AL353613.1
arriba
TMEM132B--TDG
arriba
AP005597.1--OR4A16
arriba
OR4A11P--OR4A16
arriba
IGH@-ext--SPG7
arriba
IGH-@-ext--SPG7
arriba
SOGA3--KIAA0408
arriba
ITGA9--AC108752.1
arriba
ITGA9--MRPS17P3
arriba
FRG1DP--MLLT10P1
arriba
FRG1DP--5_8S_rRNA
arriba

  0%|          | 0/53 [00:00<?, ?it/s]
Processing EWSR1--FLI1:   0%|          | 0/53 [00:00<?, ?it/s]
Processing EWSR1--FLI1:   2%|▏         | 1/53 [00:00<00:05,  9.02it/s]
Processing SMURF2P1--SP2:   2%|▏         | 1/53 [00:00<00:05,  9.02it/s]
Processing SMURF2P1--SP2:   4%|▍         | 2/53 [00:00<00:05,  9.29it/s]
Processing SUPT20H--CHRDL2:   4%|▍         | 2/53 [00:00<00:05,  9.29it/s]
Processing SUPT20H--CHRDL2:   6%|▌         | 3/53 [00:00<00:05,  9.37it/s]
Processing CYP7B1--LINC01414:   6%|▌         | 3/53 [00:00<00:05,  9.37it/s]
Processing CYP7B1--LINC01414:   8%|▊         | 4/53 [00:00<00:05,  9.40it/s]
Processing ZNF875--PCSK2:   8%|▊         | 4/53 [00:00<00:05,  9.40it/s]    
Processing ZNF875--PCSK2:   9%|▉         | 5/53 [00:00<00:05,  9.43it/s]
Processing ACKR2--PCSK2:   9%|▉         | 5/53 [00:00<00:05,  9.43it/s] 
Processing ACKR2--PCSK2:  11%|█▏        | 6/53 [00:00<00:04,  9.41it/s]
Processing AC096555.1--PCSK2:  11%|█▏        | 6/53 [00:00<00:04,  9.41it/s]
Processing AC096555.1--PCSK2:  13%|█▎        | 7/53 [00:00<00:04,  9.41it/s]
Processing TLK2--AC240565.1:  13%|█▎        | 7/53 [00:00<00:04,  9.41it/s] 
Processing TLK2--AC240565.1:  15%|█▌        | 8/53 [00:00<00:04,  9.42it/s]
Processing PCDHGA6--PCDHGA8:  15%|█▌        | 8/53 [00:00<00:04,  9.42it/s]
Processing PCDHGA6--PCDHGA8:  17%|█▋        | 9/53 [00:00<00:04,  9.44it/s]
Processing PCDHGA6--PCDHGA10:  17%|█▋        | 9/53 [00:00<00:04,  9.44it/s]
Processing PCDHGA6--PCDHGA10:  19%|█▉        | 10/53 [00:01<00:04,  9.42it/s]
Processing PCDHGA6--PCDHGC5:  19%|█▉        | 10/53 [00:01<00:04,  9.42it/s] 
Processing PCDHGA6--PCDHGC5:  21%|██        | 11/53 [00:01<00:04,  9.44it/s]
Processing PCDHGA6--PCDHGC4:  21%|██        | 11/53 [00:01<00:04,  9.44it/s]
Processing PCDHGA6--PCDHGC4:  23%|██▎       | 12/53 [00:01<00:04,  9.44it/s]
Processing PCDHGA6--PCDHGB6:  23%|██▎       | 12/53 [00:01<00:04,  9.44it/s]
Processing PCDHGA6--PCDHGB6:  25%|██▍       | 13/53 [00:01<00:04,  9.45it/s]
Processing PCDHGA6--PCDHGB7:  25%|██▍       | 13/53 [00:01<00:04,  9.45it/s]
Processing PCDHGA6--PCDHGB7:  26%|██▋       | 14/53 [00:01<00:04,  9.46it/s]
Processing PCDHGA6--PCDHGA12:  26%|██▋       | 14/53 [00:01<00:04,  9.46it/s]
Processing PCDHGA6--PCDHGA12:  28%|██▊       | 15/53 [00:01<00:04,  9.41it/s]
Processing PCDHGA6--PCDHGC3:  28%|██▊       | 15/53 [00:01<00:04,  9.41it/s] 
Processing PCDHGA6--PCDHGC3:  30%|███       | 16/53 [00:01<00:03,  9.38it/s]
Processing PCDHGA6--PCDHGA9:  30%|███       | 16/53 [00:01<00:03,  9.38it/s]
Processing PCDHGA6--PCDHGA9:  32%|███▏      | 17/53 [00:01<00:03,  9.36it/s]
Processing PCDHGA6--PCDHGA11:  32%|███▏      | 17/53 [00:01<00:03,  9.36it/s]
Processing PCDHGA6--PCDHGA11:  34%|███▍      | 18/53 [00:01<00:03,  9.35it/s]
Processing PCDHA11--PCDHAC1:  34%|███▍      | 18/53 [00:01<00:03,  9.35it/s] 
Processing PCDHA11--PCDHAC1:  36%|███▌      | 19/53 [00:02<00:03,  9.34it/s]
Processing PCDHA11--PCDHAC2:  36%|███▌      | 19/53 [00:02<00:03,  9.34it/s]
Processing PCDHA11--PCDHAC2:  38%|███▊      | 20/53 [00:02<00:03,  9.34it/s]
Processing PCDHA11--PCDHA13:  38%|███▊      | 20/53 [00:02<00:03,  9.34it/s]
Processing PCDHA11--PCDHA13:  40%|███▉      | 21/53 [00:02<00:03,  9.34it/s]
Processing PCDHA6--PCDHA13:  40%|███▉      | 21/53 [00:02<00:03,  9.34it/s] 
Processing PCDHA6--PCDHA13:  42%|████▏     | 22/53 [00:02<00:03,  9.34it/s]
Processing PCDHA6--PCDHAC1:  42%|████▏     | 22/53 [00:02<00:03,  9.34it/s]
Processing PCDHA6--PCDHAC1:  43%|████▎     | 23/53 [00:02<00:03,  9.35it/s]
Processing PCDHA6--PCDHAC2:  43%|████▎     | 23/53 [00:02<00:03,  9.35it/s]
Processing PCDHA6--PCDHAC2:  45%|████▌     | 24/53 [00:02<00:03,  9.35it/s]
Processing SPG7--PLSCR5:  45%|████▌     | 24/53 [00:02<00:03,  9.35it/s]   
Processing SPG7--PLSCR5:  47%|████▋     | 25/53 [00:02<00:02,  9.34it/s]
Processing SPG7--AC092957.1:  47%|████▋     | 25/53 [00:02<00:02,  9.34it/s]
Processing SPG7--AC092957.1:  49%|████▉     | 26/53 [00:02<00:02,  9.37it/s]
Processing PCDHA8--PCDHA10:  49%|████▉     | 26/53 [00:02<00:02,  9.37it/s] 
Processing PCDHA8--PCDHA10:  51%|█████     | 27/53 [00:02<00:02,  9.38it/s]
Processing PCDHGB2--PCDHGA8:  51%|█████     | 27/53 [00:02<00:02,  9.38it/s]
Processing PCDHGB2--PCDHGA8:  53%|█████▎    | 28/53 [00:02<00:02,  9.36it/s]
Processing PCDHGB2--PCDHGA10:  53%|█████▎    | 28/53 [00:02<00:02,  9.36it/s]
Processing PCDHGB2--PCDHGA10:  55%|█████▍    | 29/53 [00:03<00:02,  9.35it/s]
Processing PCDHGB2--PCDHGC5:  55%|█████▍    | 29/53 [00:03<00:02,  9.35it/s] 
Processing PCDHGB2--PCDHGC5:  57%|█████▋    | 30/53 [00:03<00:02,  9.34it/s]
Processing PCDHGB2--PCDHGC4:  57%|█████▋    | 30/53 [00:03<00:02,  9.34it/s]
Processing PCDHGB2--PCDHGC4:  58%|█████▊    | 31/53 [00:03<00:02,  9.34it/s]
Processing PCDHGB2--PCDHGB6:  58%|█████▊    | 31/53 [00:03<00:02,  9.34it/s]
Processing PCDHGB2--PCDHGB6:  60%|██████    | 32/53 [00:03<00:02,  9.34it/s]
Processing PCDHGB2--PCDHGB7:  60%|██████    | 32/53 [00:03<00:02,  9.34it/s]
Processing PCDHGB2--PCDHGB7:  62%|██████▏   | 33/53 [00:03<00:02,  9.35it/s]
Processing PCDHGB2--PCDHGA12:  62%|██████▏   | 33/53 [00:03<00:02,  9.35it/s]
Processing PCDHGB2--PCDHGA12:  64%|██████▍   | 34/53 [00:03<00:02,  9.35it/s]
Processing PCDHGB2--PCDHGC3:  64%|██████▍   | 34/53 [00:03<00:02,  9.35it/s] 
Processing PCDHGB2--PCDHGC3:  66%|██████▌   | 35/53 [00:03<00:01,  9.35it/s]
Processing PCDHGB2--PCDHGA9:  66%|██████▌   | 35/53 [00:03<00:01,  9.35it/s]
Processing PCDHGB2--PCDHGA9:  68%|██████▊   | 36/53 [00:03<00:01,  9.35it/s]
Processing PCDHGB2--PCDHGA11:  68%|██████▊   | 36/53 [00:03<00:01,  9.35it/s]
Processing PCDHGB2--PCDHGA11:  70%|██████▉   | 37/53 [00:03<00:01,  9.35it/s]
Processing PCDHA10--PCDHAC2:  70%|██████▉   | 37/53 [00:03<00:01,  9.35it/s] 
Processing PCDHA10--PCDHAC2:  72%|███████▏  | 38/53 [00:04<00:01,  9.36it/s]
Processing PCDHA10--PCDHAC1:  72%|███████▏  | 38/53 [00:04<00:01,  9.36it/s]
Processing PCDHA10--PCDHAC1:  74%|███████▎  | 39/53 [00:04<00:01,  9.33it/s]
Processing PCDHA10--PCDHA13:  74%|███████▎  | 39/53 [00:04<00:01,  9.33it/s]
Processing PCDHA10--PCDHA13:  75%|███████▌  | 40/53 [00:04<00:01,  9.37it/s]
Processing CCDC169--SOHLH2:  75%|███████▌  | 40/53 [00:04<00:01,  9.37it/s] 
Processing CCDC169--SOHLH2:  77%|███████▋  | 41/53 [00:04<00:01,  9.38it/s]
Processing SUCLA2--AL158828.1:  77%|███████▋  | 41/53 [00:04<00:01,  9.38it/s]
Processing SUCLA2--AL158828.1:  79%|███████▉  | 42/53 [00:04<00:01,  9.36it/s]
Processing SUCLA2--AL353613.1:  79%|███████▉  | 42/53 [00:04<00:01,  9.36it/s]
Processing SUCLA2--AL353613.1:  81%|████████  | 43/53 [00:04<00:01,  9.36it/s]
Processing TMEM132B--TDG:  81%|████████  | 43/53 [00:04<00:01,  9.36it/s]     
Processing TMEM132B--TDG:  83%|████████▎ | 44/53 [00:04<00:00,  9.39it/s]
Processing AP005597.1--OR4A16:  83%|████████▎ | 44/53 [00:04<00:00,  9.39it/s]
Processing AP005597.1--OR4A16:  85%|████████▍ | 45/53 [00:04<00:00,  9.40it/s]
Processing OR4A11P--OR4A16:  85%|████████▍ | 45/53 [00:04<00:00,  9.40it/s]   
Processing OR4A11P--OR4A16:  87%|████████▋ | 46/53 [00:04<00:00,  9.38it/s]
Processing IGH@-ext--SPG7:  87%|████████▋ | 46/53 [00:04<00:00,  9.38it/s] 
Processing IGH@-ext--SPG7:  89%|████████▊ | 47/53 [00:05<00:00,  9.37it/s]
Processing IGH-@-ext--SPG7:  89%|████████▊ | 47/53 [00:05<00:00,  9.37it/s]
Processing IGH-@-ext--SPG7:  91%|█████████ | 48/53 [00:05<00:00,  9.37it/s]
Processing SOGA3--KIAA0408:  91%|█████████ | 48/53 [00:05<00:00,  9.37it/s]
Processing SOGA3--KIAA0408:  92%|█████████▏| 49/53 [00:05<00:00,  9.36it/s]
Processing ITGA9--AC108752.1:  92%|█████████▏| 49/53 [00:05<00:00,  9.36it/s]
Processing ITGA9--AC108752.1:  94%|█████████▍| 50/53 [00:05<00:00,  9.36it/s]
Processing ITGA9--MRPS17P3:  94%|█████████▍| 50/53 [00:05<00:00,  9.36it/s]  
Processing ITGA9--MRPS17P3:  96%|█████████▌| 51/53 [00:05<00:00,  9.29it/s]
Processing FRG1DP--MLLT10P1:  96%|█████████▌| 51/53 [00:05<00:00,  9.29it/s]
Processing FRG1DP--MLLT10P1:  98%|█████████▊| 52/53 [00:05<00:00,  9.34it/s]
Processing FRG1DP--5_8S_rRNA:  98%|█████████▊| 52/53 [00:05<00:00,  9.34it/s]
Processing FRG1DP--5_8S_rRNA: 100%|██████████| 53/53 [00:05<00:00,  9.37it/s]
Processing FRG1DP--5_8S_rRNA: 100%|██████████| 53/53 [00:05<00:00,  9.37it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory