.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (BT-20_FFPE_RNA_0001_B23LG7FLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/24856886ed8fbac15c3937d605d00e/.command.log
Size: 1.3 KB
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (BT-20_FFPE_RNA_0001_B23LG7FLT4_1)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-6ef41cd9-2e18-4687-842c-3f6f49c5643f/e6/b0f48d6d7a697674824d761d17ce05/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/860a36ac1367933d11ce3c5bdfbd06/BT-20_FFPE_RNA_0001_B23LG7FLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/24856886ed8fbac15c3937d605d00e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/97db92688d9e608d324f9459e288ac/BT-20_FFPE_RNA_0001_B23LG7FLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/24856886ed8fbac15c3937d605d00e/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

[32mRunning application...[0m
TVP23C--CDRT4
arriba

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Processing TVP23C--CDRT4:   0%|          | 0/1 [00:00<?, ?it/s]
Processing TVP23C--CDRT4: 100%|██████████| 1/1 [00:00<00:00,  8.95it/s]
Processing TVP23C--CDRT4: 100%|██████████| 1/1 [00:00<00:00,  8.92it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory