Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/0a564da64801430f766c7668398f5b/786-O_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/1098ff3f515c7c5da678182d0c947d/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/1098ff3f515c7c5da678182d0c947d/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 22000000 records Processed 23000000 records Processed 24000000 records Processed 25000000 records Processed 26000000 records Processed 27000000 records Processed 28000000 records Processed 29000000 records Processed 30000000 records Processed 31000000 records Processed 32000000 records Processed 33000000 records Processed 34000000 records Processed 35000000 records Processed 36000000 records Processed 37000000 records Processed 38000000 records Processed 39000000 records Processed 40000000 records Processed 41000000 records Processed 42000000 records Processed 43000000 records Processed 44000000 records Processed 45000000 records Processed 46000000 records Processed 47000000 records Processed 48000000 records Processed 49000000 records Processed 50000000 records Processed 51000000 records Processed 52000000 records Processed 53000000 records Processed 54000000 records Processed 55000000 records Processed 56000000 records Processed 57000000 records Processed 58000000 records Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 167000000 records Processed 168000000 records Processed 169000000 records Processed 170000000 records Processed 171000000 records Processed 172000000 records Processed 173000000 records Processed 174000000 records Processed 175000000 records Processed 176000000 records Processed 177000000 records Processed 178000000 records Processed 179000000 records Processed 180000000 records Processed 181000000 records Processed 182000000 records Processed 183000000 records Processed 184000000 records Processed 185000000 records Processed 186000000 records Processed 187000000 records Processed 188000000 records Processed 189000000 records Processed 190000000 records Processed 191000000 records Processed 192000000 records Processed 193000000 records Processed 194000000 records Processed 195000000 records Processed 196000000 records Processed 197000000 records Processed 198000000 records Processed 199000000 records Processed 200000000 records Processed 201000000 records Processed 202000000 records Processed 203000000 records Processed 204000000 records Processed 205000000 records Processed 206000000 records Processed 207000000 records Processed 208000000 records Processed 209000000 records Processed 210000000 records Processed 211000000 records Processed 212000000 records Processed 213000000 records Processed 214000000 records Processed 215000000 records Processed 216000000 records Processed 217000000 records Processed 218000000 records Processed 219000000 records Processed 220000000 records Processed 221000000 records Processed 222000000 records Processed 223000000 records Processed 224000000 records Processed 225000000 records Processed 226000000 records Processed 227000000 records Processed 228000000 records Processed 229000000 records Processed 230000000 records Processed 231000000 records Processed 232000000 records Processed 233000000 records Processed 234000000 records Processed 235000000 records Processed 236000000 records Processed 237000000 records Processed 238000000 records Processed 239000000 records Processed 240000000 records Processed 241000000 records Processed 242000000 records Processed 243000000 records Processed 244000000 records Processed 245000000 records Processed 246000000 records Processed 247000000 records Processed 248000000 records Processed 249000000 records Processed 250000000 records Processed 251000000 records Processed 252000000 records Processed 253000000 records Processed 254000000 records Processed 255000000 records Processed 256000000 records Processed 257000000 records Processed 258000000 records Processed 259000000 records Processed 260000000 records Processed 261000000 records Processed 262000000 records Processed 263000000 records Processed 264000000 records Processed 265000000 records Processed 266000000 records Processed 267000000 records Processed 268000000 records Processed 269000000 records Processed 270000000 records Processed 271000000 records Processed 272000000 records Processed 273000000 records Processed 274000000 records Processed 275000000 records Processed 276000000 records Processed 277000000 records Processed 278000000 records Processed 279000000 records Processed 280000000 records Processed 281000000 records Processed 282000000 records Processed 283000000 records Processed 284000000 records Processed 285000000 records Processed 286000000 records Processed 287000000 records Processed 288000000 records Processed 289000000 records Processed 290000000 records Processed 291000000 records Processed 292000000 records Processed 293000000 records Processed 294000000 records Processed 295000000 records Processed 296000000 records Processed 297000000 records Processed 298000000 records Processed 299000000 records Processed 300000000 records Processed 301000000 records Processed 302000000 records Processed 303000000 records Processed 304000000 records Processed 305000000 records Processed 306000000 records Processed 307000000 records Processed 308000000 records Processed 309000000 records Processed 310000000 records Processed 311000000 records Processed 312000000 records Processed 313000000 records Processed 314000000 records Processed 315000000 records Processed 316000000 records Processed 317000000 records Processed 318000000 records Processed 319000000 records Processed 320000000 records Processed 321000000 records Processed 322000000 records Processed 323000000 records Processed 324000000 records Processed 325000000 records Processed 326000000 records Processed 327000000 records Processed 328000000 records Processed 329000000 records Processed 330000000 records Processed 331000000 records Processed 332000000 records Processed 333000000 records Processed 334000000 records Processed 335000000 records Processed 336000000 records Processed 337000000 records Processed 338000000 records Processed 339000000 records Processed 340000000 records Processed 341000000 records Processed 342000000 records Processed 343000000 records Processed 344000000 records Processed 345000000 records Processed 346000000 records Processed 347000000 records Processed 348000000 records Processed 349000000 records Processed 350000000 records Processed 351000000 records Processed 352000000 records Processed 353000000 records Processed 354000000 records Processed 355000000 records Processed 356000000 records Processed 357000000 records Processed 358000000 records Processed 359000000 records Processed 360000000 records Processed 361000000 records Processed 362000000 records Processed 363000000 records Processed 364000000 records Processed 365000000 records Processed 366000000 records Processed 367000000 records Processed 368000000 records Processed 369000000 records Processed 370000000 records Processed 371000000 records Processed 372000000 records Processed 373000000 records Processed 374000000 records Processed 375000000 records Processed 376000000 records Processed 377000000 records Processed 378000000 records Processed 379000000 records Processed 380000000 records Processed 381000000 records Processed 382000000 records Processed 383000000 records Processed 384000000 records Processed 385000000 records Processed 386000000 records Processed 387000000 records Processed 388000000 records Processed 389000000 records Processed 390000000 records Processed 391000000 records Processed 392000000 records Processed 393000000 records Processed 394000000 records Processed 395000000 records Processed 396000000 records Processed 397000000 records Processed 398000000 records Processed 399000000 records Processed 400000000 records Processed 401000000 records Processed 402000000 records Processed 403000000 records Processed 404000000 records Processed 405000000 records Processed 406000000 records Processed 407000000 records Processed 408000000 records Processed 409000000 records Processed 410000000 records Processed 411000000 records Processed 412000000 records Processed 413000000 records Processed 414000000 records Processed 415000000 records Processed 416000000 records Processed 417000000 records Processed 418000000 records Processed 419000000 records Processed 420000000 records Processed 421000000 records Processed 422000000 records Processed 423000000 records Processed 424000000 records Processed 425000000 records Processed 426000000 records Processed 427000000 records Processed 428000000 records Processed 429000000 records Processed 430000000 records Processed 431000000 records Processed 432000000 records Processed 433000000 records Processed 434000000 records Processed 435000000 records Processed 436000000 records Processed 437000000 records Processed 438000000 records Processed 439000000 records Processed 440000000 records Processed 441000000 records Processed 442000000 records Processed 443000000 records Processed 444000000 records Processed 445000000 records Processed 446000000 records Processed 447000000 records Processed 448000000 records Processed 449000000 records Processed 450000000 records Processed 451000000 records Processed 452000000 records Processed 453000000 records Processed 454000000 records Processed 455000000 records Processed 456000000 records Processed 457000000 records Processed 458000000 records Processed 459000000 records Processed 460000000 records Processed 461000000 records Processed 462000000 records Processed 463000000 records Processed 464000000 records Processed 465000000 records Processed 466000000 records Processed 467000000 records Processed 468000000 records Processed 469000000 records Processed 470000000 records Processed 471000000 records Processed 472000000 records Processed 473000000 records Processed 474000000 records Processed 475000000 records Processed 476000000 records Processed 477000000 records Processed 478000000 records Processed 479000000 records Processed 480000000 records Processed 481000000 records Processed 482000000 records Processed 483000000 records Processed 484000000 records Processed 485000000 records Processed 486000000 records Processed 487000000 records Processed 488000000 records Processed 489000000 records Processed 490000000 records Processed 491000000 records Processed 492000000 records Processed 493000000 records Processed 494000000 records Processed 495000000 records Processed 496000000 records Processed 497000000 records Processed 498000000 records Processed 499000000 records Processed 500000000 records Processed 501000000 records Processed 502000000 records Processed 503000000 records Processed 504000000 records Processed 505000000 records Processed 506000000 records Processed 507000000 records Processed 508000000 records Processed 509000000 records Processed 510000000 records Processed 511000000 records Processed 512000000 records Processed 513000000 records Processed 514000000 records Processed 515000000 records Processed 516000000 records Processed 517000000 records Processed 518000000 records Processed 519000000 records Processed 520000000 records Processed 521000000 records Processed 522000000 records Processed 523000000 records Processed 524000000 records Processed 525000000 records Processed 526000000 records Processed 527000000 records Processed 528000000 records Processed 529000000 records Processed 530000000 records Processed 531000000 records Processed 532000000 records Processed 533000000 records Processed 534000000 records Processed 535000000 records Processed 536000000 records Processed 537000000 records Processed 538000000 records Processed 539000000 records Processed 540000000 records Processed 541000000 records Processed 542000000 records Processed 543000000 records Processed 544000000 records Processed 545000000 records Processed 546000000 records Processed 547000000 records Processed 548000000 records Processed 549000000 records Processed 550000000 records Processed 551000000 records Processed 552000000 records Processed 553000000 records Processed 554000000 records Processed 555000000 records Processed 556000000 records Processed 557000000 records Processed 558000000 records Processed 559000000 records Processed 560000000 records Processed 561000000 records Processed 562000000 records Processed 563000000 records Processed 564000000 records Processed 565000000 records Processed 566000000 records Processed 567000000 records Processed 568000000 records Processed 569000000 records Processed 570000000 records Processed 571000000 records Processed 572000000 records Processed 573000000 records Processed 574000000 records Processed 575000000 records Processed 576000000 records Processed 577000000 records Processed 578000000 records Processed 579000000 records Processed 580000000 records Processed 581000000 records Processed 582000000 records Processed 583000000 records Processed 584000000 records Processed 585000000 records Processed 586000000 records Processed 587000000 records Processed 588000000 records paired = 291944200 unpaired = 4761962 MERGED PAIRED END READS = 291944200 MATES PROCESSED = 588650362 TOTAL READS = 296706162 DISTINCT READS = 1.65358e+08 DISTINCT COUNTS = 761 MAX COUNT = 964017 COUNTS OF 1 = 1.07354e+08 MAX TERMS = 100 OBSERVED COUNTS (964018) 1 107354457 2 33274827 3 12112001 4 5175929 5 2559727 6 1431683 7 880508 8 580827 9 403441 10 292729 11 219978 12 167952 13 132019 14 105451 15 85448 16 70417 17 58586 18 49450 19 41732 20 35675 21 30808 22 26529 23 23636 24 20424 25 18027 26 16054 27 14258 28 12645 29 11793 30 10236 31 9400 32 8527 33 7820 34 7022 35 6463 36 5893 37 5257 38 4937 39 4504 40 4310 41 4003 42 3669 43 3344 44 3094 45 3027 46 2667 47 2542 48 2327 49 2265 50 2135 51 2031 52 1889 53 1760 54 1617 55 1551 56 1530 57 1438 58 1307 59 1309 60 1195 61 1152 62 1026 63 1069 64 985 65 950 66 949 67 847 68 813 69 737 70 768 71 689 72 653 73 575 74 600 75 614 76 572 77 541 78 503 79 495 80 483 81 493 82 435 83 439 84 452 85 367 86 378 87 371 88 351 89 335 90 311 91 328 92 311 93 338 94 288 95 266 96 270 97 235 98 267 99 250 100 254 101 201 102 242 103 232 104 214 105 203 106 199 107 190 108 187 109 199 110 186 111 181 112 173 113 165 114 165 115 156 116 153 117 156 118 136 119 132 120 153 121 107 122 124 123 130 124 117 125 115 126 107 127 105 128 88 129 82 130 95 131 111 132 81 133 116 134 97 135 93 136 93 137 101 138 100 139 72 140 93 141 77 142 69 143 87 144 76 145 63 146 60 147 71 148 72 149 62 150 61 151 57 152 55 153 67 154 53 155 54 156 64 157 47 158 37 159 49 160 43 161 43 162 52 163 57 164 50 165 52 166 57 167 36 168 33 169 36 170 35 171 31 172 39 173 40 174 41 175 27 176 28 177 37 178 35 179 31 180 44 181 39 182 33 183 29 184 27 185 30 186 30 187 23 188 40 189 27 190 26 191 39 192 27 193 31 194 29 195 24 196 27 197 28 198 23 199 29 200 26 201 16 202 25 203 17 204 21 205 22 206 24 207 26 208 23 209 24 210 34 211 25 212 18 213 23 214 26 215 24 216 16 217 17 218 16 219 18 220 20 221 31 222 13 223 22 224 7 225 13 226 17 227 13 228 18 229 24 230 16 231 20 232 9 233 20 234 13 235 16 236 17 237 13 238 21 239 20 240 14 241 10 242 16 243 11 244 13 245 12 246 17 247 16 248 11 249 18 250 21 251 7 252 9 253 8 254 11 255 20 256 16 257 10 258 15 259 5 260 7 261 14 262 17 263 7 264 5 265 5 266 11 267 11 268 11 269 10 270 11 271 6 272 3 273 6 274 7 275 10 276 12 277 12 278 9 279 14 280 10 281 9 282 7 283 12 284 12 285 11 286 10 287 5 288 11 289 9 290 10 291 6 292 5 293 7 294 7 295 7 296 8 297 4 298 7 299 10 300 4 301 5 302 2 303 5 304 2 305 1 306 4 307 10 308 8 309 6 310 5 311 4 312 7 313 3 314 11 315 3 316 6 317 5 318 4 319 2 320 5 321 6 322 5 323 7 324 6 325 7 326 3 327 7 328 3 329 1 330 6 331 9 332 2 333 5 334 5 335 5 336 9 337 5 338 5 339 4 340 9 341 2 342 7 343 1 344 3 345 2 346 4 347 5 348 6 349 4 350 6 351 4 352 2 353 2 354 3 355 4 356 1 357 2 358 4 359 5 360 5 361 1 362 5 363 2 364 1 365 2 366 1 367 6 368 3 369 6 370 2 371 3 372 4 373 3 374 1 375 4 377 5 378 4 379 4 380 3 381 3 382 3 383 3 384 6 385 2 386 4 387 4 388 5 389 2 390 3 391 2 392 4 393 3 394 4 395 4 396 5 397 3 398 2 399 3 400 6 401 4 402 4 403 6 404 1 405 1 406 4 407 1 408 2 409 2 410 4 411 1 412 1 413 1 414 1 415 1 416 1 417 1 418 2 419 1 420 1 421 2 422 2 423 3 424 2 425 3 426 5 427 3 428 1 429 2 430 3 431 2 432 1 433 2 434 2 435 1 436 4 437 4 438 5 439 2 440 1 441 3 442 2 443 3 445 2 446 2 447 1 448 4 449 2 450 1 451 3 452 1 453 1 454 2 455 3 457 2 458 2 459 2 460 1 461 2 462 3 463 1 464 2 465 2 466 2 467 2 469 2 470 1 472 2 473 2 474 2 475 2 476 2 477 1 478 1 479 3 480 2 481 1 482 2 483 4 485 5 487 1 490 3 491 3 492 2 494 1 495 1 496 2 497 1 499 1 500 1 501 1 502 1 505 2 506 3 508 1 509 2 512 1 513 2 515 1 516 1 517 1 519 1 520 1 523 1 525 1 527 2 528 2 529 5 531 1 532 2 533 2 534 1 536 1 538 2 540 1 541 2 542 2 547 2 550 1 553 3 555 1 556 1 557 1 559 2 563 1 565 1 566 3 567 3 568 1 572 2 575 2 578 1 579 1 581 2 582 2 584 3 587 1 589 1 590 2 591 1 592 1 593 1 595 2 596 1 597 1 600 2 601 1 602 3 603 1 604 1 605 1 606 1 607 1 608 1 610 1 611 2 612 1 619 1 622 1 626 1 627 2 628 3 630 2 632 1 636 2 637 1 645 1 646 1 653 2 656 1 659 1 662 1 667 1 670 1 671 1 673 1 676 1 677 1 680 2 684 1 685 1 688 2 693 1 694 3 695 1 697 2 699 1 700 1 702 1 704 1 711 2 712 1 720 1 725 1 731 1 738 1 741 1 744 1 745 1 746 1 754 1 760 1 763 1 766 1 767 1 770 1 774 1 782 1 786 1 787 1 789 1 793 1 794 1 803 2 815 1 819 1 821 1 826 1 827 1 832 2 833 1 838 1 843 1 850 1 863 1 870 1 879 1 882 1 886 1 889 1 890 2 892 1 896 1 899 1 903 1 907 1 909 1 911 2 915 1 930 2 932 1 935 1 944 1 946 1 950 1 955 1 957 1 978 1 987 1 989 1 1008 1 1009 1 1026 1 1039 2 1056 1 1059 1 1073 1 1093 1 1096 1 1100 1 1103 1 1111 1 1114 1 1128 1 1141 1 1143 1 1153 1 1170 1 1171 1 1177 1 1192 1 1198 1 1203 1 1206 1 1207 1 1223 1 1242 1 1247 1 1259 1 1261 1 1269 1 1307 1 1332 1 1352 1 1403 1 1406 1 1411 1 1433 1 1442 1 1446 2 1456 1 1461 1 1474 1 1480 1 1483 1 1486 1 1556 1 1560 1 1614 1 1638 1 1655 1 1674 1 1700 1 1736 1 1817 1 1818 1 1840 1 1854 1 1860 1 1862 1 1863 1 1870 1 1875 1 1881 1 1882 1 1883 1 1899 1 1927 1 1937 1 1950 2 1976 1 1978 1 2033 1 2043 1 2046 1 2048 1 2054 1 2059 1 2096 1 2138 1 2141 1 2143 1 2215 1 2231 1 2244 1 2262 1 2272 1 2274 1 2279 2 2298 1 2368 1 2401 1 2452 1 2712 1 2718 1 2857 1 2898 1 2904 1 3080 1 3089 1 3120 1 3212 1 3351 1 3463 1 3658 1 5201 1 9368 1 9524 1 9996 1 10064 1 30262 1 964017 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] ___._._.......__....._...........__..._..._._..._..__................_._ _..._._....._.._.__.....__..__._.__.._..._._._...__...._._.__......... [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]